Clostridium sporogenes: CLSPO_c36510
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Entry
CLSPO_c36510 CDS
T03905
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cld
Clostridium sporogenes
Pathway
cld03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cld00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CLSPO_c36510 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cld03021
]
CLSPO_c36510 (rpoB)
03400 DNA repair and recombination proteins [BR:
cld03400
]
CLSPO_c36510 (rpoB)
Enzymes [BR:
cld01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CLSPO_c36510 (rpoB)
Transcription machinery [BR:
cld03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CLSPO_c36510 (rpoB)
DNA repair and recombination proteins [BR:
cld03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CLSPO_c36510 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
AKC64341
UniProt:
A0A7X5SX73
LinkDB
All DBs
Position
complement(3967515..3971231)
Genome browser
AA seq
1238 aa
AA seq
DB search
MVHPVQVGKRTRMSFSRLKEVGQMPNLIEVQLDSYDWFLKEGLQEVFDDINPIQDYTGNL
NLEFVGYKLDLDSIKYSVEECKERDSTYAAPLKVKVRLLNKETGEIKEQEVFMGDFPLMT
EQGTFIINGAERVIVSQLVRSPGVYYDMTVDKTGSKLFSATVIPNRGAWLEYETDSNNII
YVRIDKTRKLPITILARALGYGTDAEIIEFFGEDERLKATIEKDNTKTREEALLEIYKRL
RPGEPPTVDSAESLIESLFFDAKRYDLSRVGRYKFNKKLAIHLRITNQIADQDIVNPQTG
EILVQKGEKIDKDKAIEIQNCGINEVYIKIDDKSFKVIGNHFVDIHSLVSFDISDLNIKE
YVFYPVLKEILDNYADEESIKEEIRKNIYRLIPKHIIREDIYATINYELGLSYDIGYKDD
IDHLGNRRLRSVGELLQNQFRIGLSRMERVVKERMTIQDQEVITPQALINIRPVAASIKE
FFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETP
EGPNIGLINSLATFAKVNEYGFIETPYRRIDPKNKRATNDIVYMTADEEDLYVIARSDEP
IDEKGYFLDDKVTVRAKEEVLVVPVSEVEYMDISPRQLVSVATAMIPFLENDDASRALMG
SNMQRQAVPLLKPQAPIVGTGIEYKAATDSGVLPKAKNAGTVVYVSADEIRVRRDSDGGI
DKYKLLKFKRSNQGTCINQRPIVSKDEVVAKETLLADGPSTDLGEIALGKNILMGFITWE
GYNYEDAMLISEQLVKEDVFTSIHIEEYEAEARDTKLGPEEITRDIPNVGEEALKDIDER
GIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGII
VDVKIFTRENGDELPPGVNKLVRCYIAQKRKISVGDKMAGRHGNKGVISRVLPEEDMPFL
PDGRPLQICLNPLGVPSRMNIGQVLEVHLGLAASKLGWHIATPVFDGAIESDIVDCLRKA
GYSEDGKTVLYDGRTGEPFDNRVTVGYMYILKLAHLVDDKIHARSTGPYSLVTQQPLGGK
AQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGVPES
FKVLIKELQALCLDVKVLNDDNQEIKLKESVDEDADELEVNIEGTENQPGDKEEKEDKEK
EDSEDSNEYDDLREEDVEPDLEELSLDDLDLDDFGDEH
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atggtacatcctgtccaagttggcaaaaggactcgtatgagcttttctaggcttaaagag
gttgggcaaatgccaaatcttatagaagttcagttagactcatatgattggtttttaaaa
gaagggttacaagaagtttttgacgatattaacccgattcaagattatacaggtaatcta
aatttagaatttgtaggctacaaactagatttagatagtattaaatactctgttgaagag
tgcaaagaaagagattctacttatgcagcaccattaaaagtaaaagttagacttttaaat
aaggaaactggtgaaataaaagaacaagaagtttttatgggagatttccctttaatgaca
gaacaaggaacttttataataaacggtgcagaaagggttatagtaagccaattagttaga
tcaccaggggtttattatgacatgactgtagataaaacaggaagcaaattattctcagct
acagttatacctaacagaggtgcatggttagaatatgaaacagattcgaataacataata
tatgtaagaattgacaaaacacgaaaattaccaattactatattagcaagagcattaggt
tatggaacagatgctgaaataatagaattcttcggagaagatgaaagattaaaagccaca
atagaaaaagataatacaaagactagagaagaggctttacttgaaatatataaaagatta
agaccaggtgaaccacctactgtggatagtgcagaatctttaattgaatctttattcttc
gatgctaaaagatatgatttatcaagagttggaagatataaatttaataagaaattagca
atccatctaagaataacaaatcaaattgcagatcaagatatagttaatccacaaacagga
gaaattttagtacaaaaaggtgaaaaaatagataaagataaggctattgaaatacagaac
tgtggtattaacgaagtatatataaaaatagatgataagtcatttaaagtaattggcaat
cactttgtagacatacatagtttggtttcattcgatataagtgatttaaatattaaagaa
tatgtattctatcctgttttaaaagaaatactagataattatgctgatgaagaaagtata
aaagaagaaataagaaagaatatatatagattaattcctaaacatattataagagaagat
atatatgctaccataaattatgaattaggattaagttatgatattggttataaagatgat
atagatcatttaggaaatagaagattaagatcagtaggagaattattacaaaatcaattt
agaattggtttatctagaatggaaagagttgttaaagaaagaatgacaattcaagatcaa
gaagtaataactcctcaagctctaataaatatcagacctgtagcagcgtccattaaagaa
ttttttggtagttcacaattatcacaatttatggatcaaacaaaccctctatcagaatta
acacataaaagaaggttgtcagctttaggaccaggaggactttcaagagaaagggccggt
tttgaagtaagagacgttcaccattcacattatggaagaatgtgtcctatagaaactcca
gaaggaccaaacatagggcttataaattctttagctacttttgctaaggttaatgaatat
ggatttatagaaacaccttatagaagaatagatcctaaaaataaaagagctacaaatgat
atagtatatatgacagcggacgaagaagatttatatgtaatagctagatcagatgagcca
attgatgaaaagggatattttttagatgataaagttacagttagggctaaagaagaagtt
ttagttgttccagttagcgaagttgagtatatggatatatcaccaagacaattggtttct
gttgcaactgcaatgataccattccttgaaaatgatgatgccagccgtgcacttatggga
tcaaacatgcaacgtcaagcagtaccactattaaagccacaggctccaatagttggaaca
ggtatagaatataaagctgcaacggattcaggggttcttccaaaggctaaaaatgcaggg
acagtagtatatgtttcagcagatgaaataagagtaagaagagatagcgatggaggaata
gataaatataagttattaaaattcaaaagatctaaccaaggaacatgcataaatcaaaga
ccaattgtttctaaagatgaagtagtagctaaggaaactctattagcagatggaccttct
acagatcttggagaaatagcccttggtaagaatattcttatgggctttataacatgggaa
ggatataattacgaagatgccatgttaatttcagagcaattagtaaaagaagatgtgttt
acatctatacacatagaagaatatgaagcagaagctagggatacaaaactaggaccagaa
gagataacaagagatatacctaatgtaggagaagaagctcttaaagatatagatgaaaga
ggcatcattagaattggtgctgaagttagatctggagatatattagtaggtaaagttact
ccaaagggagaaactgaactaacagctgaagaaagattacttcgtgctatatttggagaa
aaagcaagagaagttagagatacatcacttagagttccacatggagaagcaggaattata
gttgatgttaaaatatttacaagagaaaatggtgatgaattaccaccaggagttaataaa
ttagttagatgctatatagctcaaaagagaaaaatatctgttggagataagatggcagga
agacatggtaataaaggggttatctctagagttttaccagaagaagatatgccattctta
ccagatggaagaccacttcagatatgcctaaatcctttaggggtaccatcacgtatgaat
ataggtcaggtattagaagtacatttagggttagctgctagtaaattagggtggcatata
gctacaccggttttcgacggggcaatagaatctgacatagtagattgtttaagaaaagct
ggttattctgaggatggaaaaactgttttatatgatggaagaacaggagaaccatttgat
aatagagtaacagtaggatatatgtatattttaaaactagctcatttagttgatgataaa
atacatgctagatctacaggtccatactcactagtaactcaacaacctcttggaggtaaa
gctcagtttggaggacaaagatttggtgagatggaagtttgggctttagaagcttatgga
gctgcccatacccttcaagaaatattaacagttaaatcagatgatgtagttggaagagtt
aagacttatgaagctatagtaaagggagaaaatattccagaacctggagttcctgaatct
ttcaaagttttaataaaagaattacaagcattatgtttagatgttaaggtattgaatgat
gataatcaagaaataaaattaaaggaatctgtagatgaagatgcagacgaattagaagta
aatatagaaggtacagaaaatcaaccaggagataaagaagaaaaagaagataaagaaaaa
gaagatagtgaagatagtaatgaatatgatgacttaagagaagaggatgtagaaccagat
ttagaggagttatcattagatgacttagatttagatgattttggtgatgaacattaa
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