Clavelina lepadiformis (light-bulb sea squirt): 143445598
Help
Entry
143445598 CDS
T11416
Name
(RefSeq) superkiller complex protein 3-like
KO
K12600
superkiller protein 3
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143445598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clep03019
]
143445598
Messenger RNA biogenesis [BR:
clep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
143445598
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
143445598
NCBI-ProteinID:
XP_076800929
LinkDB
All DBs
Position
2:complement(663748..676247)
Genome browser
AA seq
1597 aa
AA seq
DB search
MSKQVKAALRAAKQSIQNKEYKDALKHCEEIFKHDEKNYNGLVFYGLCLAELCRKEDSRS
AYHDAIAAQPDQILAYQGLVNLYTKHWVAKLTEENTNDLISTYQALIRLTNEKEEKKLFD
FYVKLSGAYSSIGKIDDSMKALSNAFLKAGSDGVSRDVIYSEVVECVKIAKPPYSDVQAH
LNLVFDAVSHICVQATSSIHSKEDALLHLIICLQNDQRLLREKLGYIIPTSLSFCESQEK
SDLGFLILTEIFVQDAKLFDETSLKKYHTLQENYDGTHQNLIKGHQSYHNGDYDTCVELF
ENCLHDSGEFIPARLLLCEAYTRMHKHSTAETKARRSLHICKTLQTSAVSRNSSWLVRLA
SISDLKLDLTLCLADALAESGDESSVKLAVATYEKLSKVRPESMEIFLGLAKSSMKLDDL
TSACSYLDQVDKVDPDNISSKCWRAYIDFMLGEKNKSISSLEELVDADPSSFLAHFLLGK
LMWESDPIYRRDKKKCFSFFLKAAKLDVYHGETFLYLGHFYRDVANDRARAVKCYEKAHS
LDGQSEAIGAALADQFIVGGDYEAAIKLYENITNVAAAGTCKWAWLRLGLCRLKTSDSSS
AIKCFQAALRADVNDYICWECLGEGYLSRGSFSAAWKAFSRAHELEPSSVYSIYQMAAIK
QILCQYPEAISEYTDVLKISPNYVPALKGLGESHLSMAKFMLTEGRDLTCVDHINEAIQN
LASALQTRGQMCCVWKLLGDSCSITRPLHSSCVKILMPKMLSSLQNKDHMDDDVVVLSKM
QALEAGEKFYAQALHLHNDASLWHDLALNCFWQSNEEEYKSKQLALANKSLLVLQKAITI
ENDNHKFWNSLGVVSASENIQNYELAQHSYLKSINLEPNNVEAWSNLGNLYLDQSQIELA
HKAFKTAQSLDPSYVNSWVGQALIAESIGSEEAMDLFRHSTELGLHSQASIGYAMWICNT
ISDSENMSASKLKENIQEVNAVAAAVTQMSKYCSRHPHHAWAFSLYGFVLEQSSLLQSSE
KAYKHALDAYQLRCESSVDENDKLNLKKMIVQAKSDYARLLRKTGKFSESIEAYRSISPL
NKFCDVYGLAISLFRGGKLNEAFTALEQAKLIAPNDDDRIEVMVAMAILLWRQKKKKEAR
ELLESCGNHKIKVVQCLCAFGILQNDNALVESTLQDLIAYDVNNKKQSDVTIDNCLFIAA
GMMLQNPSKARVSIQKYIHRYPNEWRFRDILSQLLCSNNSSMACTSAHQSKKNFNQDDVI
SSQDGKKCRKDHQRMSLTHSTTALANGDHRSRSADPFKTCQRFLHSHPYSTKALALLGAS
CHAHSVLSSFTTDRAVLLPTTQSLANLLAQNSDGKLHAWAVKLNMLSCLVEHKHEVVEDL
AKKISVDFEESDVIGLLSECDKQFQATGAIDDVTKCEVGNIARSKSATKLTKQLIAHIFD
CDGSTDEAVAQIQDELKLSDERGTSVALKSAHLAYQAARRGGDGVDTWCAKAREYINEAI
RVSGDLPLVQLMDGLCHRLAASSRKTKSALNKVLNNPTSGNSLCTCKNIAAWYLYMLHHD
KNDHQQMTKLLEKWSTLNDSDYYISKIKNLLPLENMT
NT seq
4794 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaacaggtgaaagcggctcttagagcggcgaaacaatcaattcaaaacaaagaa
tacaaagatgcgctgaaacattgcgaggaaatcttcaaacatgacgaaaagaattacaat
ggtttagttttctatggactgtgccttgccgagctttgtaggaaagaagattcacgctca
gcttaccacgatgctatcgcagcacaacctgaccagatactggcataccagggccttgta
aacctctacacgaaacactgggtggcaaaactgactgaagaaaacacaaatgatctgatc
tcaacctaccaggctctaatcaggctaactaatgaaaaagaagaaaagaagttgtttgat
ttctatgtcaaactgtctggtgcttattcttcgattggaaagattgatgattctatgaaa
gcactttcgaatgcattcttgaaggctggaagtgacggggtgtctcgtgatgtcatatac
tcggaagtagttgaatgtgtgaaaattgcaaaaccaccatacagcgatgtccaagcccac
ttaaatttggttttcgatgctgtttctcatatttgcgttcaagccaccagcagtattcat
agtaaggaggacgctcttctacatctaattatctgtcttcaaaatgatcaaaggttgctc
agggagaaactaggttatataattccaacgtctctttcgttttgcgaaagtcaagaaaaa
agtgatcttgggtttctgattctgacggaaatctttgtacaagatgcaaaactatttgat
gaaacaagtttgaaaaaatatcacactttacaagaaaactacgatggaacacaccaaaac
ctaataaaagggcatcagtcatatcacaatggcgattatgacacgtgtgtggagttgttt
gaaaattgtcttcacgattctggtgaattcatcccagcaagattgctgttatgtgaggcc
tacacaagaatgcacaaacacagcacggctgagactaaggcaagacgcagcttacacata
tgcaagacattacagacatctgcagtttccaggaactcttcctggttggtgagactcgct
tcaatatccgatctaaaactggatctcactctttgcttggcagatgcactggctgagtct
ggagatgaatcctctgttaagcttgctgtagctacttatgagaagttaagcaaagttcga
ccagaatcaatggaaattttcctgggattggcaaaatcgtcgatgaaattagacgattta
acatcagcatgttcatatcttgatcaagttgataaagtcgacccagacaacatctcgtcc
aaatgttggcgagcttatatagacttcatgcttggcgagaagaacaagagtatttcctca
ttagaagagctggtggatgctgatccttcttctttccttgctcatttcctcctcgggaag
ttgatgtgggaatcagatccgatttacaggagagacaagaaaaaatgtttctctttcttt
ttaaaagcagccaagctggatgtataccacggcgagacattcctgtatttgggtcatttc
tatcgagacgtggcaaacgatcgtgctcgcgccgtgaaatgttacgaaaaagctcacagc
cttgatggtcaaagtgaagcaatcggtgcagctctggcagatcagttcatagttggtggt
gattatgaagcagcaatcaagctttatgaaaacataactaatgtggcagcagccggtacc
tgtaagtgggcttggctcagactcggactttgtcgcttgaaaactagtgattcttccagc
gccatcaagtgtttccaggccgcacttcgggccgacgtgaatgattatatttgctgggaa
tgccttggagagggctacttgagcagaggaagcttctccgctgcttggaaagctttcagt
cgcgctcatgaactcgaaccatcttctgtgtacagcatctatcaaatggccgccatcaaa
cagatcttgtgccaatatcctgaagcaatatcggaatacaccgatgtcctcaaaatctca
ccaaattatgtccctgcattgaaaggattaggagaaagtcatctttccatggccaagttc
atgctcaccgagggtcgtgaccttacgtgtgtcgaccatatcaatgaggcgatacaaaat
cttgcgtcggctctacagaccagaggtcagatgtgctgtgtgtggaaattgttgggggat
tcctgctccatcacccgtcctctccactcatcctgtgtaaagatcttgatgccgaagatg
ttgtcatctttacagaataaagatcacatggatgatgatgttgtcgtactgtcgaagatg
caggctttagaagccggggagaaattttatgctcaagcccttcacctgcacaatgacgcc
tccttgtggcatgatttggcgctgaattgcttctggcaatccaatgaagaagaatacaaa
tcaaagcagcttgcactggctaataagtctcttttggttcttcagaaagcaatcacaatt
gagaacgacaatcacaaattctggaatagtcttggcgtggtttctgcatcagaaaatatt
cagaactatgaactagctcagcattcctacttgaaatcgataaatctggaaccgaacaac
gtggaagcgtggagtaaccttggcaacctttatctcgaccaatcacagatcgaattggca
cacaaagcatttaagactgcgcagagtttagacccatcgtacgtaaacagctgggtcgga
caggctttaattgccgagagcatcggaagcgaagaagcgatggatttatttcgtcattcc
accgaacttggcctccacagccaggctagcataggttatgcgatgtggatttgcaacacg
atatcggattccgagaacatgtctgcgagcaaattgaaagaaaatattcaagaggtgaat
gcagttgcggcggcggtcactcaaatgtccaagtactgcagccgacacccacaccatgcc
tgggcgttctcgctctacgggtttgttctggaacaatccagtttgttgcaaagttcagag
aaagcatacaaacatgccttggatgcgtatcaattgcgatgtgagagttctgtggatgaa
aatgataaacttaacttaaagaaaatgattgtccaggcgaaatcagattacgcaagactc
ttaagaaaaaccggcaaattttcagaatctattgaagcttatcggtcaatctctccattg
aacaagttttgtgatgtctatggcctggctatatcactttttcgtggtggaaaactaaac
gaagctttcacagctctcgaacaggcgaaactgatcgctccgaatgatgatgacagaatc
gaagtcatggttgccatggcgattttgctgtggaggcagaagaagaagaaggaagcgaga
gagttgttggagtcttgtgggaaccacaagatcaaagtggttcaatgtctttgcgcattc
ggaattctccagaacgacaacgctctggtggaatccactcttcaagatctcatcgcttat
gatgtgaacaataaaaagcaaagtgatgtcacaattgataattgtttgttcattgctgct
ggcatgatgctgcagaatcccagcaaagctcgtgtttcaattcagaaatatattcacaga
tatccaaatgaatggagattcagggatattctttcacaactcctctgttcgaacaactcg
tcgatggcttgcacctcagcccaccagagcaagaagaacttcaaccaagacgacgtcatc
agcagccaggacgggaagaagtgccgcaaagatcatcaacgaatgtcactgactcactct
acaaccgcgcttgctaatggcgatcatcgaagcaggtcagctgatcccttcaagacctgc
cagaggttccttcattcccatccttattccacgaaggcacttgctctgctaggtgcaagt
tgccatgcgcactctgtcttgtcaagtttcacaacagacagggcagttttgctcccaacc
acacagtcccttgcgaatctgctggctcaaaattctgatggaaaacttcacgcatgggcg
gtcaagctgaacatgttgtcatgcttggttgagcacaagcacgaagttgttgaggatctt
gccaaaaagatctcggtggatttcgaagaaagtgacgtcatcggtttgctgagcgaatgc
gacaagcaattccaggcgaccggtgctattgatgacgtcacgaaatgtgaagttggcaac
atcgcgcgttccaagtcggcgacaaaactaacgaagcagcttatagcgcacatctttgac
tgcgacggatcgaccgatgaagccgtcgctcaaatccaagatgaattgaagttgtcggat
gagcgcgggacgtccgtcgccctcaaaagcgctcatctcgcctatcaagccgctcgtcga
ggtggcgatggggtcgacacttggtgcgccaaagcgcgcgaatatatcaacgaagctatt
cgagtttcaggggatctcccgcttgtgcaactgatggacggactctgtcacagattggcg
gcatcgtctaggaaaacgaaatctgcactgaacaaagtcctgaacaaccctacttcgggg
aattccctgtgcacgtgcaagaacattgccgcctggtacctctatatgttgcaccatgac
aagaacgaccatcagcaaatgacgaaacttctggagaaatggtcaactttgaatgacagc
gattattacatcagcaagattaaaaatctcttgcctttagaaaatatgacgtag
DBGET
integrated database retrieval system
