Clavelina lepadiformis (light-bulb sea squirt): 143452023
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Entry
143452023 CDS
T11416
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
143452023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clep03400
]
143452023
Enzymes [BR:
clep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
143452023
DNA repair and recombination proteins [BR:
clep03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
143452023
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Ortholog
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GFIT
Other DBs
NCBI-GeneID:
143452023
NCBI-ProteinID:
XP_076808951
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Position
4:15597860..15612459
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AA seq
933 aa
AA seq
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MAERSAASSAEILTDSKVAFNQLCHLFEIMHKAKNNSIRKQQFNDFVNRWKKIQHSSTSV
KSNSFFPAFRLILPQLDKERLSYGVKEMLLAKLYIDVLGLSKSGQDAKKLLEYRNPKRNS
VSAGDFAEIAFRHVLSKRCISDGKLTIAEINQFLDDLAKYNNEKRKDMVKKTLLNLIQKT
SSIEQKWLIRIMLKDTKLKLGHKIMLKVFHPDAEEVYNITTSLRQVCERLPDIDVCLSDA
EIELFQPFRPMLALNAKLEEIEKLMDYKPFLIEIKYDGERSQVHKDGKQYKYFSRNGKEY
STVFGETPYKGTITPYIHDCFSAEVQSCILDGEMMGYHSEMKIFMQKGAQFDIKHVTEDS
ELQPCLVVFDLLYLNGKRLTSLSQTERHEKLRSVINPVEGRLQFSEDKQASLNQDVVRYL
NDAIDRREEGIIVKHPEAKYAPNKRKGSGWLKIKPEYTLGVVDDLDLVIIGGSFGSGRRG
NFLSTFLLGVAVKDSNNKPPDGAIVFKSLCRVGSGYTDKQLLEIIDKLKPNMKVFNKKKI
PDWMKVTKEKPDVYIHPKDSLVVQIRASEIIPSTSYAAGCTLRFPRLVAVRNDKDFVDAL
DTSQLEDLKNIADGKLAARHADLPSEGSPPEKKRKVKTEAPSTISIKYLGVDLSSVEQTS
SSFQGRVFCILTGSKDHDKQNLEKRVVEHGGNIVQNPVSDTFCVVARDERNIKVKNVIKC
GKYNVVKIDWLIGCLKKGMIVPWEPQDMLHATASTELHFKQKYDKYGDDFLKDLTSDTLK
EIFQKISDDDVLEILPKEDAKDRHVALKQFLTSVLERYESRGFADQPTLLFLGMNFYFCQ
SNIDLTATEYASVEELRALVAFYGGTILNSLDNVTHVVASTCIVDDKNLRDVFEFRQSKR
RKFYIVNENWIKDCLKQGCIICETNYLLAPMLK
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atggcagagagaagtgcagcaagttctgctgaaatattgactgattcaaaagttgcattt
aatcaactatgccatctattcgaaattatgcacaaggctaaaaacaacagcattcggaag
cagcagtttaatgattttgttaatcgatggaagaaaattcagcatagctcaacttcagtg
aagtcaaactctttttttcctgcttttcgtctaattttgccacagcttgacaaagaaaga
ctatcgtatggtgttaaggaaatgttgttggcaaaattgtacatagatgttcttggtttg
tctaaatcaggacaagatgcaaaaaagttgctggagtatcgaaatccaaagcgaaattct
gtttcagcaggtgactttgctgaaattgcatttcgtcatgttctgtcaaagcgctgcatc
agtgatggtaaattaacaatagctgaaatcaaccaatttcttgatgaccttgccaaatac
aacaatgaaaagagaaaggatatggtgaagaagactttgttaaatcttatccaaaagaca
tcttcaattgaacaaaaatggttaattcggattatgttaaaagatacaaaacttaagtta
ggtcacaaaattatgttaaaagtgtttcatcctgatgctgaagaagtctacaacattaca
actagtctaaggcaggtttgtgagcgtttgcctgatatagatgtttgtctgtctgacgcc
gaaatcgagcttttccaaccttttcggcccatgttggcactaaatgctaaactggaggag
attgaaaaacttatggattataaaccatttttaattgaaataaaatatgacggtgagcgt
agccaagttcataaagatggcaaacagtacaagtatttctcaagaaatggcaaagaatat
tctactgtctttggtgaaaccccctacaaaggtactataaccccatatatacatgattgt
ttttctgctgaagtacaatcatgtattttagatggtgaaatgatgggctatcactcagaa
atgaagatatttatgcagaaaggagctcagttcgatataaaacatgtcacagaggattcc
gagctacagccatgtcttgttgtatttgacttgttatatctaaatggaaaacgtttgacg
tctctcagccaaactgaaagacatgaaaagctgcgcagtgtcataaaccctgttgagggt
agattgcagttttctgaggataagcaagccagtttaaaccaagatgtagttaggtatttg
aatgatgctattgacagacgtgaagagggaattatcgtgaaacatccagaagctaaatat
gctcccaataaaagaaagggaagtggttggcttaaaatcaaaccggagtatacactcggt
gttgttgatgatttggatcttgtaataattggtggtagttttggttctggaagacgtgga
aattttttatcaacgtttctgcttggtgtagcagtcaaagatagtaataataaaccacca
gatggagccattgtttttaaatcattatgtagagttgggtctggttacactgataaacaa
ctccttgaaatcatagataaattgaagcccaatatgaaagtatttaacaagaagaagata
ccagattggatgaaggttacaaaagagaaacctgacgtgtacattcatccaaaggattcc
ctcgtggttcaaatacgggcaagcgagattattccatcaacttcgtatgcagcaggttgc
acattgcgattcccgagactggttgctgttcgaaacgacaaggactttgtagatgctttg
gatacctcgcaactggaagatcttaaaaatatagctgacggaaaacttgctgctcgtcac
gcagatctgcccagtgaaggatcgccacctgagaagaaaaggaaagtaaagacagaggca
ccatccaccatatcgataaaatatttgggcgttgatctatcatctgtcgaacaaacttcg
tcttcgtttcagggcagggtattctgcattttaaccggctcaaaagaccacgataagcag
aaccttgaaaagcgagttgttgaacacggtggtaatattgtgcaaaatcctgtttctgat
acattttgcgttgtggcgagagacgaacggaacatcaaagtgaaaaacgttatcaaatgt
ggaaaatataatgtagtcaaaatcgattggttaataggttgtcttaagaagggtatgatt
gttccgtgggaaccgcaagatatgctgcatgcaacagcatcaactgaattgcactttaag
caaaagtatgacaaatatggagatgattttttaaaggatttgacgtcggacactttgaaa
gagatattccaaaaaataagtgatgatgatgttcttgaaatacttcctaaagaggatgcc
aaggaccggcatgttgcattgaagcaatttctcacatctgtacttgaacgatatgaatca
cgtggatttgctgatcaaccaactctgttgttcctgggaatgaatttctacttttgccag
agtaatatcgatttgacagcgactgagtacgcctctgttgaggaactccgtgctttagta
gctttctatggtggaactattcttaattccttggacaacgtcacacacgttgttgcatct
acttgcattgtggacgataaaaatttgcgggatgtatttgaatttcgacaaagcaaacgc
cgaaaattttacatcgtaaatgagaactggattaaagactgcttaaaacaaggatgtata
atttgcgaaaccaactaccttcttgcccctatgctgaagtaa
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