Clavelina lepadiformis (light-bulb sea squirt): 143458771
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Entry
143458771 CDS
T11416
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03018
RNA degradation
clep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143458771
09123 Folding, sorting and degradation
03018 RNA degradation
143458771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clep03019
]
143458771
03041 Spliceosome [BR:
clep03041
]
143458771
Messenger RNA biogenesis [BR:
clep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
143458771
mRNA degradation factors
5'-3' decay
Lsm complex
143458771
Spliceosome [BR:
clep03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
143458771
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
143458771
NCBI-ProteinID:
XP_076811745
LinkDB
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Position
5:18693280..18695592
Genome browser
AA seq
126 aa
AA seq
DB search
MLPLSLLKTAVNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDHFWRMPECY
IRGSTIKYLRIPDEVIDMVKEESMNKGRGRGGSGRGRGKGTFGRGRGASGGGRGGPKKGG
KIKPRE
NT seq
381 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctgtccctattgaaaactgctgtcaaccatccaatgcttgtagagctgaaa
aatggagaaacttacaatggtcatttagtcagctgtgacaactggatgaatatcaatctt
agagaagtgatttgcacatcaagggatggtgatcatttttggagaatgccagagtgctat
attcgaggaagtacaataaaatatctgagaattcctgatgaagtgatcgatatggtgaaa
gaagaatcaatgaacaagggaagaggacgcggtggatctggaagaggaagaggaaaaggt
acatttggaaggggacgtggagcatcaggagggggaagaggtggaccgaagaagggagga
aagatcaagccgagagagtga
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