Clavelina lepadiformis (light-bulb sea squirt): 143461123
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Entry
143461123 CDS
T11416
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143461123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clep03019
]
143461123
Messenger RNA biogenesis [BR:
clep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
143461123
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
143461123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
143461123
NCBI-ProteinID:
XP_076815027
LinkDB
All DBs
Position
5:complement(2701030..2723432)
Genome browser
AA seq
2607 aa
AA seq
DB search
MNLDSLSLTVSQISYLVANLSKKNYNKSTSELTTLVERHGTEAERHLFRCLFSWIDFGGD
VKSTGKDYHQTQLLTQEFVSLTSRPSLITTICNSIENPLSHQKTLAASSSLIPNISRVLH
FSKVQEIAFGICLQHSANADLAKQGSQFVERKLPELVRFLTESGNSKRSGEQQDIGLQDS
PVEIQHLLLLHLPQGGLTLEQKQSFFTVLRKEYPSDRCPLILLPYLYQSQEDIHMERLLV
ESTPSPIMSSSSNSGNQKSSAMNSVSLANILQEMGHASCASLDECRKTLSILRNNLSAGS
VARVIAMMVRTANESLDNVTLLPALSGGGVWSDNKDKSEDQVISWNVDNFIQVAKEMNQS
LNTRDVFLELDHPGFVIMDVTGFRLVVRALQLLLNQHESFPIEVLYKKWTNTRGQLSWIQ
QSLMNSNVFCIADYPTRTVNVDILKQPLDEENSDILTWKSLDLVECLIHLSDLGVHYDDV
RRLFEWPFNNCPDLLMLSLAQSGTSWQALRRDLVLSLLPVFLGSHPNSAMVLSFLWNGQS
QSNIMRQLMMLSMAEWYMRSDQYDQQKLSRVLDIAQDLKALPMLLNSTPFSFVIDLAVLA
SRREYLKLDKWLSDKIREHREEFIQACVNFLKRRCPSVLGGLHSKDDALASSYLSPETLT
TMLSCLQSYTSGSGMSQELSDTIVTMVANCSNLINKSRQALPGVMAKPRPTPPAPQPPQP
NIPTPPSLPQTNPKVENLLTKSMDPVTGVSGYAGNKAPMQPQSALPGFGTTSDFPNPAAG
SVRIQPAIGSNNPSNMSSPGGAGILPPNSGMSDGIGMGSGISSNNPGGMGPVGAPGSSGG
QFVGGASGFSASIAQGLGSQLGGGNSSGLGLSGAPTSSSAGFGPSQFGFGGSQLMQGFPN
QLLGNLGNVGGTTSVSDSFAQNKFDSFSNQKPELFRSKMDIFSQQKPSLGNTGGMGVGLG
STLGTGMGSGLDMFGKKSSMGSLGPAAQQAFQQAAAKAPKPMSDLSQVWPEMNQQFSKDI
EDEANGYFQRIYNQPPHPTLSVDEILDLLQKFKDSNNKQEREVFNCMMRNLFEEYRFFPQ
YPDKELHITACLFGGIIEKNLVTYLALGIALRYVLEALRKPHNTKMYYFGIAALDRFKLK
LKDYPQYCIHIASISHFKSFPGHLVEFVESGRQSEEPLNKTSASVTTPGSLAFAAQQHQL
GLRPLALTGGEGGSPHSGTPTPSAVNPVPMRAASAGAKISLTGAIGKEMQQPSIAKATNI
DTLLGAKIPEEKIPEPPEGVQDKIAFIFNNLSVSNMTPKSDEMRDAIKDEHTPWLSQYLV
MKRVSIEPNFHLLYSNFLDCLKISRLNELVQEEVYRNITVLLQSDKTVANFSDRSLLKNL
GHFLGIISLAKNKPILHDDIALKPLLYEAYSKGAQELLYVVPFVAKVLESVGKSKVFKLP
NPWTEAIMSVLVELHMEPDLKLNLKFEVEVLCKNLQIDISDIKPAHYLKDPEVKYTLDTQ
QLSTSSSSKDNGASSKPSTPSEQPQAVPRSTAPMIMGGIPGPPLSSGFPPPGPPLQQQQA
PMPMPALTPRFSFHDINVYSIATLQSHLIIKMELPLLQNQPQLKDFVKPAVERSVRDVLQ
PAVERAIKIALTTSEQIVRKDFALDPEEFRMRTAAQHMVRNLTAGMALITCREQLLQGIS
NHLKQNFIQALTRQHPQSLGPQQKEMVDQAASVIAADNVELACCFIQKTAVERAIMDMDK
KMATEYELRKHARQEGRRYCDPGVLTYQAERMPEQIRLKVGGVTQLQTTVYEEFAHCIPG
FLPSNDSSQPSGFLSKPMQSWAVDEMTQVYERCIAELEQRIQMMGLKQNTPLFSQLQSLH
ESLVLARNSREVVTALALLQKAVEGLLDSPGQGSVEQDALVRYRECHLLILKALQDQQVY
GPQWTNKHVTQCLINHRDEYKYNVEAVELLIRSHLVNMQQYDQHLAQAMENGLNYMALVF
AMQLVKLFLVEENKGSPVSESDFYNTIEILGKINTMSRGASPDGLPQLIEVIKSNFDSML
DKAPGGPTQMMHSGISQAREYDDPAGLHEKTEYLLREWVNIYHSPASGRDSTRGFSSFVQ
QMHQQGILRTDDLITRFFRLCTEMCVDLTYRLLQESNVSPSLLNPTLVRAKCFHTLDAFV
RLITLLVKHSGDAVNSVTKINLLNKVLGIVVGVLLHDHETRQMEYHQMPYHRIFIMLFYE
LNAPEHVLESINFQTLTAFTNTYHILRPNKAPGFAFAWLELISYRAFISRMLLHTPQQKG
WPMYAQLLIDLFKFLAPFLRNVEMTKSIQILYKGTLRLLLVLLHDFPEFLCDYHYGFCDV
IPANCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLQEINVAPRILTNFVAVMPGAFQKDL
DSYLKTRAPVTFVSDLRSNLQLGNEPGLKYNIPLINSLVMYVGTQAIAYIHGKGGSPSMA
TITHASHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAEANQESI
QEQITRVLLERLIVNRPHPWGLLITFIELIKNPSFKFWSHEFVHCAPEISKLFESVARSC
MGKQFNQQAAGEASTSTASPATVVQSS
NT seq
7824 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgttgtccttaaccgtgtctcagataagctaccttgtggctaacttg
tcaaagaaaaactacaacaaaagcacatcggaactaacaactttggtcgagaggcacggg
acagaggctgaacggcacctgtttcgttgtcttttctcgtggattgattttgggggtgat
gttaagtcaacaggaaaagattatcatcagactcaacttctcacgcaagagtttgtttca
ttgacatctcgtccaagtcttattacaacgatctgtaattcaattgaaaatccactctca
caccagaaaaccttagcagcgtctagctcgttaattcccaacatcagccgtgttcttcac
ttctcaaaagtgcaagaaatcgcattcggcatctgccttcaacattccgcaaacgctgac
ttagcaaagcaaggttctcagtttgtagaaagaaagcttccggaactagtcaggttcctc
actgaaagtggtaacagcaaaagatccggagagcagcaggatattggcctacaagacagt
cctgttgaaatacagcatctcctgctattgcacttaccacagggtggccttacacttgaa
caaaagcaaagctttttcactgttttgcgcaaagaatacccttccgatcgctgccctctc
atcctgctgccatatctatatcaatcacaggaagatattcacatggagagattgctcgtt
gaatcaaccccatcgccaataatgtcctcttcatcgaattccggaaaccaaaaatcatca
gcaatgaacagcgtgtcgttggccaatatattacaagaaatgggccatgcatcatgtgcc
agcttggatgaatgccgtaaaactctttccattcttcggaataacttgtcagctggttca
gttgcgcgagtaattgctatgatggttcgtacggccaatgaaagtcttgacaacgttaca
ctcctaccagcgctttctggaggtggtgtgtggtctgataacaaagacaagtcggaagac
caagttatatcgtggaatgtcgataactttatacaagtcgctaaggaaatgaatcaatcc
ttgaacacacgcgacgttttcctggaactagaccatcctggctttgtcataatggatgtc
accggctttcgtttggttgtacgggcactacagcttttactaaaccagcacgaaagtttt
cccattgaagttttgtataaaaagtggacaaatacacggggacagttatcgtggatacag
caatcattgatgaattccaacgtattctgcatcgccgattatccgacaaggacagtcaat
gttgacattcttaaacaaccgttggacgaagagaactcggatattctgacatggaaatcc
ttagaccttgttgaatgtctcatccatctgtcagacctaggtgttcattatgatgatgtc
agacgactttttgaatggccgttcaataactgcccggatctactcatgctttctctagca
cagtcgggaacgtcgtggcaagctcttcgccgtgacttagttttaagcttgctccctgtt
tttctcggaagccatcccaactctgccatggtactcagcttcctctggaatgggcagagc
cagtcgaacataatgcgtcaactcatgatgctgagcatggcggaatggtacatgagaagt
gaccagtacgatcaacaaaaactttcaagggtccttgacatcgctcaagatctcaaggcc
ttgcccatgcttttgaacagcacccctttcagttttgttattgaccttgctgtgcttgct
tcgaggcgagaatatctgaagctggataaatggctttcggataaaatccgagagcaccgg
gaagagttcattcaagcgtgtgtcaactttctcaagcgacgttgcccaagtgttctagga
ggtctccattcaaaggatgatgcgcttgcgtcttcctacctctctccggagacactgact
acaatgctctcctgcttacaatcatacacgagtggcagtggcatgtcccaagaactgtct
gataccatcgtaacaatggtcgccaactgcagtaatctgatcaacaaatctcgccaagcc
ttgcctggggtgatggccaaacccaggccgaccccaccagccccacagcctcctcagcct
aacatacccacccctccttccctgccacagaccaacccaaaagttgaaaatctgctcacg
aaatcgatggatcctgtaacgggtgtatccggttatgctggcaacaaggcaccaatgcaa
ccacagtcagctctaccaggctttggtacaacaagtgatttcccaaatccagccgcggga
agtgtgcgcatacaacctgcaattggttcaaataaccccagtaacatgtcaagcccagga
ggggctggaattttacccccaaattccggcatgtctgacggcataggaatgggttctgga
atcagttcaaacaaccccggtggtatgggtccggttggagctcctggaagttctggaggc
cagtttgtcggaggagccagcgggttttcagcgagcattgctcaaggacttggctctcag
cttggtgggggcaactcgagcggtctcggattatctggagccccaacttcaagctctgcg
ggttttgggccatcacagtttggatttggaggttctcagttaatgcaaggttttccgaat
caacttctcggaaacctcggcaacgtaggagggaccacttcagtgtcggactcttttgca
caaaacaaatttgactcgttttcaaatcaaaagccggaactctttcggagcaagatggat
attttctcgcaacaaaaaccatccctcggaaacacaggtgggatgggtgttggtttgggc
agcacactggggaccggaatgggatctggacttgatatgtttggtaagaaatcgtcgatg
ggttcactgggacctgcagcacagcaagcgtttcaacaagccgcagcaaaagcccccaaa
ccaatgtctgatctctcccaagtgtggccggagatgaaccagcagtttagcaaggacatt
gaagatgaggcgaacggctacttccaacggatttacaaccaacctcctcatccaactctg
tccgtcgatgagatcctcgatcttcttcagaagtttaaagattcaaataacaaacaggaa
agggaggttttcaactgcatgatgcggaatctctttgaagaatacagatttttccctcaa
tacccagacaaagagcttcatattacggcctgtttgtttggaggaattattgaaaaaaat
cttgtcacatacttagctctcggaattgcacttcgctacgtacttgaggctttacgcaag
ccgcacaacaccaagatgtattactttgggattgctgctctcgatcgcttcaagttgaag
ctgaaggactaccctcaatattgcatccacattgcctcaatctcgcacttcaaaagcttt
cccggccacctagtggagtttgtggagagtggtcgccaatcagaggaaccactcaataaa
acatcggccagtgtgaccactcctggcagcctcgcgtttgccgctcaacaacatcaacta
gggttacgacccctggctctcacaggtggggaagggggctccccccattcagggaccccc
acacccagcgctgtgaaccccgtacccatgcgcgcagcatcggcgggggcaaagatatct
ctcacgggtgctattgggaaggaaatgcagcaaccatcgattgcgaaggcaactaacatt
gatacactgcttggagcaaaaatccctgaggagaagattccagaaccgccagaaggtgtc
caggacaaaattgctttcattttcaacaacctctcagtgtccaacatgacaccgaagtcg
gacgagatgagagatgctatcaaggatgagcacacaccttggttatctcagtatcttgtc
atgaagagggtgagcatcgaacccaacttccatcttctctactccaacttcctcgactgt
ttgaagatctctcgtcttaacgagctggttcaggaggaggtctatcgtaatatcactgtg
ttgttgcaatcagacaaaactgtagccaacttctccgataggtcattattgaaaaatctt
ggacattttctggggattatatcccttgcgaaaaacaagcccattctccacgatgacatt
gccctgaagcctctattatacgaggcatacagcaaaggtgctcaagaattgctctacgtc
gtcccatttgttgcaaaagttttagaatcagtgggaaaaagtaaagtttttaaactgcca
aacccctggacagaagccattatgagcgtgcttgtagagctgcacatggagcctgattta
aagttgaatttgaaattcgaagtagaggttttatgcaaaaatcttcaaatcgacatcagt
gacatcaaacccgcccattatttgaaagatcctgaagtgaagtatacactggatacacag
caactttcaacttcatcgtcctcaaaagataacggagcgtctagcaaacccagcactcca
tctgaacaaccccaggctgtgccaagatcaactgcccccatgataatggggggaattcca
gggcccccactcagtagcgggttcccaccaccaggccctcctctgcagcaacaacaggcc
ccaatgccgatgccggcgctgacaccccgattctcgttccacgacataaacgtttattcc
atcgccactttgcaatctcatctcatcattaagatggagcttccactgcttcaaaaccaa
ccccagttgaaagattttgtaaaaccagctgtggaacgaagtgtgcgagatgtactgcaa
cctgctgttgagcgggcaatcaaaatcgcacttacaaccagcgagcaaatcgttcggaag
gactttgcactcgacccagaggaatttcgtatgcgaactgctgcccaacacatggttcga
aacctgaccgctggcatggctctgataacttgtcgcgagcagcttcttcaaggcatcagc
aatcatttgaaacaaaacttcatacaagccctgaccaggcaacatccccaatctctaggt
ccccagcagaaggagatggtggaccaggccgcatcagtgattgccgccgacaacgttgag
cttgcttgctgcttcatacagaagacagctgtcgagagagccatcatggatatggacaag
aagatggcaacggagtacgagttacgtaagcacgcgaggcaggaaggaaggagatattgt
gacccgggcgtgctcacctaccaagcagagcggatgccggaacaaatcagacttaaggtt
ggaggcgtaactcagctacagaccaccgtatacgaagagtttgctcattgcattcctgga
ttcctgccaagtaatgactcgtctcaaccttcaggatttctttctaaaccgatgcagtcg
tgggcagtagatgaaatgacacaagtgtacgaacgttgcatcgccgaacttgaacagcga
atacagatgatgggtcttaaacagaacactcccttgttctcacaactgcagagtttacac
gagtcacttgtccttgctagaaactcccgggaggttgtgacagccctagccctgttgcaa
aaagctgttgagggcttgctcgattctcctggtcaaggctctgttgagcaagacgccttg
gtgagataccgagaatgccacttgctcatactcaaagcactgcaggaccagcaggtttat
ggaccacaatggaccaacaaacacgtcactcagtgcctgatcaaccacagagacgagtac
aagtacaatgttgaggcggttgagttgttgattcgttcccatctggtcaacatgcaacaa
tacgaccaacatcttgcacaggcaatggagaatggattgaactacatggcactcgtattt
gccatgcagctggtgaagctgtttcttgtcgaagaaaacaaaggatcgccagtttcagaa
tctgacttctacaacacaatcgagattctgggcaagattaacaccatgtcaagaggagcc
agccccgatgggcttccgcagttaatagaagtgatcaaatcaaattttgactcaatgctg
gacaaagcacctggaggccctacacagatgatgcattccggaatatcacaggcccgtgaa
tacgacgatcctgcggggctgcacgaaaagacggaatacctgctccgtgagtgggtgaac
atctaccacagccccgcctctgggagggattccactcgagggttttcgagctttgtgcaa
cagatgcaccagcaaggcatcctgcgtactgatgatttaatcacaagatttttccgtctt
tgtaccgagatgtgcgttgatctcacctaccgactgctacaggagtctaatgtcagtcca
tctcttctcaatccgactctggttcgggcgaaatgtttccacacgttggatgccttcgtt
cgtctcataactctgctagtgaagcattccggagacgctgttaattctgtgaccaagatc
aatcttcttaataaggttcttggaatcgtagttggagttcttcttcacgatcatgaaaca
cggcagatggaatatcatcagatgccgtaccaccgcatcttcatcatgctcttttatgag
ctcaacgctcctgaacacgtcctggagtcgatcaacttccaaactctcactgcgtttacc
aacacttaccacatcctgcgacctaacaaggctcccgggtttgcgtttgcctggctcgaa
ctcatatcatatcgcgccttcatatctcggatgctgctgcacacacctcagcagaaggga
tggcccatgtacgcccaactactgatcgatcttttcaagtttctcgctcctttcttgagg
aacgttgagatgacgaaatcaatccagatactttacaagggcacacttcgtctactactg
gttttacttcacgacttcccggaattcttgtgcgactaccattacggattttgtgacgtc
attccagccaactgcattcaactgcgcaatttgatactaagcgctttcccgcgcaatatg
cggttgcctgacccattcacgccaaacttgaaggtcgacatgcttcaagagatcaacgtg
gcgccacgtattttaaccaacttcgtggcagtgatgccaggcgccttccagaaagacctg
gatagttacttgaagaccagagcaccggtcacattcgtctcagatctgaggtcaaacttg
cagctcggcaatgaaccgggcctcaagtacaacattccactcatcaattccctggtcatg
tacgtcggcacgcaggcgatcgcttacattcacgggaaagggggttccccttccatggcc
accatcacgcatgcgtcccacatggacatcttccaaaatcttgccgtcgaccttgatacc
gagggtcgctatctgttcttgaacgcgatagccaatcagcttcgttatccgaacagccac
acccactacttcagctgtaccttgctctaccttttcgctgaagcgaatcaagaatcaatc
caagaacaaataacgagggttctacttgagcgtttgatcgtcaatcgaccacacccgtgg
ggactcctcatcaccttcatcgaactcatcaagaatcccagtttcaagttctggagccac
gagtttgttcactgcgcgcccgaaatctccaaacttttcgaatctgttgctcggagctgc
atgggcaagcaattcaaccagcaagcagcgggtgaagcgtcaacttccaccgcttcccct
gccactgtggttcagtcgtcataa
DBGET
integrated database retrieval system
