Capnocytophaga leadbetteri: CGC53_07935
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Entry
CGC53_07935 CDS
T05313
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
clk
Capnocytophaga leadbetteri
Pathway
clk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CGC53_07935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clk03019
]
CGC53_07935
03009 Ribosome biogenesis [BR:
clk03009
]
CGC53_07935
Enzymes [BR:
clk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CGC53_07935
Messenger RNA biogenesis [BR:
clk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CGC53_07935
Ribosome biogenesis [BR:
clk03009
]
Prokaryotic type
rRNA helicases
CGC53_07935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
ParB_N
CoA_binding_2
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ATA82275
UniProt:
A0A250FDB0
LinkDB
All DBs
Position
1756267..1758015
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AA seq
582 aa
AA seq
DB search
MNLFEQLGLDEPILRAITDMGFETPSEIQQKAIPTLLEDDTDMVALAQTGTGKTAAFGFP
LLQLIDTDSKLTQGLILSPTRELCLQIASELKNYAKYLPKVNVVAVYGGASIEEQARSLK
KGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILSHTPKEKST
WLFSATMPNEVARIARQFMRKPIEITVGTRNQASSTVQHEYYVVNGRHRYQALKRLADAN
PDIFSVVFCRTKKDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQIQMLVATD
VAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVLVPKSELRKIKEIEKI
IKQPFEQKALPTGIEICEIQLYHLANSLKNVEVNPAIDDYLPAIYKELQHIDREELIKKI
FAVEFTRFFNYYKNAEVLPVEDTKDSKKGGDSGEVRYFINIGERDGYDWKTLKDFLKATL
NLGRDDVFKVDVKNSFSFFNTEADQVDLVMSTFADFKMDGRFINVEISDKGAGRSRGDKK
GGEGRKRGEDKKKGEKKGEKKSRKQKTVEAFEQAFKKKKKRK
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttgaacaattaggtcttgatgaacctatcctcagagccataactgatatg
ggctttgaaactccttctgaaatccaacaaaaagccattcctaccctcttagaagatgat
accgatatggtagctttagcccaaacgggtactggtaaaacagctgcctttggcttccct
cttctgcagcttatcgatactgatagcaagcttacacaagggcttatcctttcgcctacg
cgcgaactttgtttgcaaattgcttcagaattgaaaaattacgctaaatatttgcctaag
gtgaatgtggtagcggtatacggtggtgcgagtatagaagaacaagcgcgtagcctgaaa
aaaggggcgcaaataatagtggctaccccagggcgtatgcaggatatgatacgccgtaat
tttgtggatattagccatatcaactactgtgtgttagacgaggctgatgagatgctcaat
atgggcttttatgaagatataaccgctattttgtcgcatacacctaaggagaaaagtacg
tggcttttctcggctacgatgcctaatgaggttgcgcggatagctcgtcagtttatgcgt
aaacctatcgagataactgtcggcacacgcaatcaggcgagtagcaccgtgcagcacgag
tattacgtagtaaacgggcgacataggtatcaggcactcaagcgattagcagatgctaat
cctgatattttctcggtagttttctgtcgtactaagaaagatacgcaagctgtagctgaa
aagctgatagaagatggttataatgcggcagccttacacggcgatttgagtcagaatcag
cgcgatttggtgatgaagtccttcagggcacgccaaatacagatgttagtggctactgat
gtggcagctcgcggtatagatgtagatgacattacccacgtgatacactaccagcttcct
gacgagatagagacttataaccaccgcagtgggcgtacgggtagagctggtaagtcgggt
atttcgatggttctcgtacctaaaagtgagcttaggaagataaaggagatagagaagatt
atcaaacaaccttttgagcagaaggctttgcctacgggcattgaaatatgcgaaatacag
ctataccatttggctaacagtctgaagaatgtagaggtcaatccggctatagatgattat
ttgcctgctatttacaaagaattgcaacacatagaccgcgaagagcttatcaaaaaaata
tttgcggtagagtttactcgcttctttaattattataaaaatgccgaagtcttgccagta
gaagatacaaaagacagtaagaaaggaggcgatagtggcgaggtgcgttacttcattaac
ataggcgagcgcgatggctatgactggaagacacttaaggactttttgaaggctacgctc
aacttaggaagagatgatgttttcaaagtagatgtaaaaaatagcttttctttctttaac
accgaagcagaccaagtggacttggtgatgagtacttttgctgattttaaaatggacggc
aggtttatcaacgtagaaatttctgacaaaggggcaggacgttcgcggggtgataaaaaa
ggcggcgagggcaggaaaagaggggaagataagaagaaaggtgaaaagaaaggcgagaag
aaaagtcgtaagcaaaagactgtagaggcttttgaacaggcatttaagaaaaagaaaaaa
cgaaaataa
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