Clostridium sp. MD294: C820_001723
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Entry
C820_001723 CDS
T10174
Symbol
rpoA_1
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
clod Clostridium sp. MD294
Pathway
clod03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
clod00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C820_001723 (rpoA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clod03021
]
C820_001723 (rpoA_1)
03400 DNA repair and recombination proteins [BR:
clod03400
]
C820_001723 (rpoA_1)
Enzymes [BR:
clod01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C820_001723 (rpoA_1)
Transcription machinery [BR:
clod03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C820_001723 (rpoA_1)
DNA repair and recombination proteins [BR:
clod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C820_001723 (rpoA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
HHH_5
DUF2325
RAD51D_N
TfoX_C
MukB
Motif
Other DBs
NCBI-ProteinID:
USF30282
LinkDB
All DBs
Position
1737867..1738826
Genome browser
AA seq
319 aa
AA seq
DB search
MFEFEKPRIEIDKMAPDKTYGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVSNVKIDG
VLHEFSVIPGVKEDVTEIILNLKGLAIKNNSEGNEPKIAYIDVEGEGEVKGSDLKADSDI
EIMNPDHHIATLSGGTNTRLSMEITINKGRGYIGSDKNKKDDQPIGMLPVDSIFTPVTRV
NFLVENTRVGQITDYDKLTLEVWTNGTIAPDDAVSYGAKILNEHLNLFIDLSDNAKNTEI
MVEKEEGKKEKVLEMSIEELDLSVRSYNCLKRAGINTVEDLANKTEEEMMKVRNLGRKSL
EEVLNKMAELGLALRPSDE
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
gtgtttgaatttgagaaacctcgcattgaaattgataagatggcaccagataaaacatat
ggtaaatttgtagtagagcctttggaaagaggctatggtacaacattaggcaattcatta
agaagaatattgctttcttcattacctggtgcagcagtaagcaatgtcaaaatagatggt
gtacttcatgaatttagtgtaattcctggagtaaaagaagatgtaacagaaatcatatta
aatttgaaaggacttgccataaaaaacaacagtgaaggcaatgagccaaaaattgcatac
attgatgtagaaggcgaaggagaagtaaaaggttctgatttaaaagccgatagtgacatt
gaaattatgaacccagaccatcacattgcaacattaagcggcggtacaaatacacgttta
tctatggaaattaccataaataagggacgtggatatattggcagtgataagaacaaaaaa
gacgaccagcctattggtatgcttccagtggatagtatatttacaccagtaacaagagta
aactttttagtagagaatactcgtgttggtcaaattactgattatgataaattgacattg
gaagtttggacaaatggaacaattgcaccagacgatgcagtaagttatggtgcgaaaata
ttaaatgagcatttgaaccttttcattgacttgtctgataatgcaaaaaatacggaaatt
atggtagagaaagaagaaggtaaaaaggaaaaagtgcttgaaatgagcattgaagaactt
gacctttctgtacgttcctataactgtttgaaacgtgcaggtatcaatactgtagaagat
ttagcaaataaaacagaagaagaaatgatgaaggtaagaaatctgggacgtaagtcacta
gaagaagtgcttaataaaatggcagagttgggcttggctttacgcccaagcgatgaataa
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