KEGG   Clostridium sp. AWRP: DMR38_20690
Entry
DMR38_20690       CDS       T07742                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
clos  Clostridium sp. AWRP
Pathway
clos03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:clos00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    DMR38_20690 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:clos03400]
    DMR38_20690 (mfd)
Enzymes [BR:clos01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     DMR38_20690 (mfd)
DNA repair and recombination proteins [BR:clos03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      DMR38_20690 (mfd)
SSDB
Motif
Pfam: DEAD TRCF UvrB_inter Helicase_C CarD_TRCF_RID ResIII Virul_Fac IstB_IS21 RecG_dom3_C GCIP_C
Other DBs
NCBI-ProteinID: AZV58805
UniProt: A0A3Q9S9S2
LinkDB
Position
complement(4402006..4405527)
AA seq 1173 aa
MRLDGLIKPMRESREFKNIVDGISKKKFPIGVFGLSESAKSYLIYGVYNEIDKPFLIVTH
SDVEARKLYEDLSFYLAEVYYFPTKEMVFYNIDAISGDLRWERLKVIRKMIDTGRKIIIT
CVESLASTYIPVELYENYIINISVGNVLNLKDISEKLVQGGYEKNEIVDSKGQFSIRGDI
MDIYSPIAAEAYRIELFGDEVESIRTLNLESQRSIDKIDSIEIFPAKEIILDKDKIQKGR
KSIEDDAALVEKKLKKSKNKEALDRIDELTKKNLENLEENWSFENIDSFLPYFYDKPTSF
LDYTKDYFIVMDDVQRCFGKLNSVYFEFEENYKSLLEKGNILPKQSKMLCAKSDLLEELK
NKEIMTLDAIAKSSKVIQPKTITNFSQITLNSYQGQMDLLIEDIKDKKSRGYKILILSGT
RPRGERLVDTLRERGIESSYRDVIHEIKSGEVVITFGSQLKGFEYPDFKVGVISDKEVFG
KAKKKNTRKVPKKGVSKIKSFAELKSGDFVVHVNHGIGIYKGIKQLEVQGHKKDYLELMY
DSEDKLYVPVEQLDMVQKYIGSEGKSPKINKLGGSDWAKAKKKVKKSIEEIAEDLVKLYA
IRSTLKGYKYSKDTVWQKQFEDEFPYEETPDQLTTIQDIKQDMESDKVMDRLLCGDVGYG
KTEVAVRAAFKAVMDGKQVAFLVPTTILAQQHYNNFVQRFSDFPVKIDMISRFRTTAQQK
ASIKAVKVGDVDILIGTHRILQKDVQFKDLGLLIIDEEQRFGVSHKEKIKKIRKNVDVLT
LSATPIPRTLHMSLVGARDISVIETPPEERYPIQTYVVEYNDQLIRDAILREINRGGQVY
FVYNRVESIKEMASYIAKLIPEAKVAVAHGQMQERELENIIVDFMKNEYNILVATTIIET
GMDIQNVNTMIIYDADKMGLSQLYQLRGRVGRTNRMAYCYLSYRRDKVLTEVAEKRLKAI
KEFTELGSGFKIALKDLEIRGAGNMMGSSQHGHMAAVGYDLYCRMLEDTIKLIKGDIDKE
PVETTVELKIDAYIPDNYIKSEVQKIEIYKKIAAISSYDDMLDIKEELEDRFSDIPTSVY
NLMDISYIRSMSKKIGIEEIKEVRDEVVFSFQDQNRVDKNVLRELFKTYPHEFVLKMNKK
PGFGYKLKNVKREDILHQIKEIVKYMLKIYEQK
NT seq 3522 nt   +upstreamnt  +downstreamnt
atgagattagatggacttataaaacctatgagggaaagcagagaatttaaaaatattgtt
gatggaataagcaaaaaaaagtttcctataggcgtatttggactttcagagtcagctaaa
agttacttaatatatggagtgtataatgaaatagacaagcctttcctaattgttactcat
agtgatgtagaagccagaaaactatatgaagatctatccttttatttagcagaagtatac
tattttcctactaaagagatggtattttataatatagatgccatatcaggagatttgagg
tgggaaaggttaaaggtaataaggaaaatgatagatacaggtagaaaaattataataact
tgtgtggaatctctagcatctacatatatacctgtagagttatatgaaaattatataatt
aacatatctgtaggcaacgttttaaatttaaaagatataagtgagaaattggttcaaggt
ggttatgaaaaaaatgaaattgtggattcaaaaggtcaattttccataagaggcgacata
atggatatatactcaccaatagctgcagaagcatatagaatagagctatttggggatgaa
gtagaatctattagaactttaaatttagaatcacagagaagcattgataaaatagacagt
atagaaatatttcctgctaaagagattatacttgataaggataagattcaaaagggaaga
aaaagtatagaagatgacgcagctctagtagaaaagaaattaaaaaagagcaagaataaa
gaagcattagatagaatagatgagttaacaaagaaaaacttagagaatctagaggagaat
tggagttttgaaaatattgatagttttcttccatatttttatgataagcctacttctttc
cttgattatactaaggactattttatagttatggatgatgtacagaggtgtttcgggaaa
ttaaatagtgtatattttgaatttgaagaaaattataaaagccttttagagaagggaaat
atacttcccaaacagagcaaaatgttatgtgcaaaatctgatttacttgaagaacttaaa
aataaggaaattatgacattagatgctattgctaagtcctctaaggttattcaacctaaa
actataactaatttttctcagataactttaaatagttaccaaggacagatggatctactt
attgaggatattaaggataaaaagtctagaggatataaaattctgattttatctggaaca
agacctagaggagaaagattggtagacactttaagggaaagaggcatagaaagtagctat
agagatgttattcatgagattaaatcaggggaagttgttataacttttggaagtcaactc
aaaggttttgaatatccagattttaaagtaggagttatatcagataaagaagtttttggt
aaagcaaaaaagaagaatacaaggaaggttcctaaaaagggagtaagcaaaataaaaagt
tttgcagaacttaagtccggggattttgtagtacatgtaaatcatggtataggaatatac
aaagggataaagcagctggaagttcagggtcacaagaaggattatttggaacttatgtat
gactccgaagataaactgtatgtgcctgtagaacaattggatatggtgcaaaaatatata
ggatctgaaggaaagagtcccaaaataaataaattgggaggatcagattgggctaaagcg
aagaaaaaggtaaagaaatcaatagaggaaatagctgaagatttagtaaaattatatgca
attaggtctactttaaaaggttacaagtattcaaaggatacagtatggcaaaaacagttt
gaggatgagttcccctatgaagagacaccagatcaacttacaactatacaggatataaag
caggatatggaatcagataaggtaatggacagattactttgtggggatgtaggatatggg
aaaacggaagtagcagtaagagctgcttttaaggctgttatggatggaaaacaagttgca
tttttagtcccaactacgatacttgcgcaacaacattataataattttgttcaaaggttt
tctgattttcctgtaaaaatagatatgataagcaggtttagaacaacagcacagcaaaaa
gcatccataaaggcagttaaagtaggagacgttgatatattaattggtactcacagaata
ttacaaaaagatgtacaatttaaagatttaggacttcttataatagatgaggaacagagg
tttggagtaagtcataaggaaaagatcaaaaaaattagaaaaaatgtagatgtacttacg
ttaagtgctacacctatacctaggacattgcatatgtctctcgtaggggctagggatata
agtgttatagagacacctccagaggaaagatatccaattcaaacttatgtagtagaatat
aatgatcaattaataagagacgccatattaagagaaataaatagagggggacaggtttat
tttgtatataatagagttgagagtataaaagaaatggcttcttatatagccaaactaatt
ccagaggcaaaagtagctgtggcccatggacaaatgcaggaaagagaacttgaaaatata
atagttgattttatgaaaaatgagtataatattttagtagcaactactattatagaaacc
ggtatggatatacagaatgtaaatacaatgataatatatgatgctgataaaatgggttta
tcacaactataccaattaagaggaagagttggaagaactaatagaatggcttactgttac
ttgagctatagaagagataaggttcttacggaagtagcagaaaaaaggcttaaagctatt
aaagaatttactgaacttggatctgggtttaaaatagcactaaaagatttggaaataaga
ggtgcaggtaatatgatgggatcatcacagcatggtcatatggctgctgtaggttatgat
ctctattgcagaatgctggaagatactataaagcttataaaaggagatatagacaaagaa
cctgtagaaactaccgtagaattgaaaatagatgcatatatacctgataattatataaag
agtgaggttcagaaaatagaaatatataagaaaatagcagctataagttcctatgatgat
atgcttgatataaaagaggaattggaagatagattctctgatataccaacttcagtatac
aacttgatggatatatcctatataagaagtatgagtaagaaaatcggcatagaggagata
aaagaagtaagggacgaagtcgttttttcatttcaagatcaaaatagggttgacaaaaat
gtgcttagggaactttttaaaacttatccacatgagtttgtgttaaagatgaataaaaag
cccgggtttgggtataaattaaaaaatgtaaaaagagaagatattttacatcagattaag
gaaattgtgaaatatatgctaaaaatatatgaacaaaaatag

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