Clostridium sp. AWRP: DMR38_20690
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Entry
DMR38_20690 CDS
T07742
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
clos
Clostridium sp. AWRP
Pathway
clos03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DMR38_20690 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clos03400
]
DMR38_20690 (mfd)
Enzymes [BR:
clos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DMR38_20690 (mfd)
DNA repair and recombination proteins [BR:
clos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DMR38_20690 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Virul_Fac
IstB_IS21
RecG_dom3_C
GCIP_C
Motif
Other DBs
NCBI-ProteinID:
AZV58805
UniProt:
A0A3Q9S9S2
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All DBs
Position
complement(4402006..4405527)
Genome browser
AA seq
1173 aa
AA seq
DB search
MRLDGLIKPMRESREFKNIVDGISKKKFPIGVFGLSESAKSYLIYGVYNEIDKPFLIVTH
SDVEARKLYEDLSFYLAEVYYFPTKEMVFYNIDAISGDLRWERLKVIRKMIDTGRKIIIT
CVESLASTYIPVELYENYIINISVGNVLNLKDISEKLVQGGYEKNEIVDSKGQFSIRGDI
MDIYSPIAAEAYRIELFGDEVESIRTLNLESQRSIDKIDSIEIFPAKEIILDKDKIQKGR
KSIEDDAALVEKKLKKSKNKEALDRIDELTKKNLENLEENWSFENIDSFLPYFYDKPTSF
LDYTKDYFIVMDDVQRCFGKLNSVYFEFEENYKSLLEKGNILPKQSKMLCAKSDLLEELK
NKEIMTLDAIAKSSKVIQPKTITNFSQITLNSYQGQMDLLIEDIKDKKSRGYKILILSGT
RPRGERLVDTLRERGIESSYRDVIHEIKSGEVVITFGSQLKGFEYPDFKVGVISDKEVFG
KAKKKNTRKVPKKGVSKIKSFAELKSGDFVVHVNHGIGIYKGIKQLEVQGHKKDYLELMY
DSEDKLYVPVEQLDMVQKYIGSEGKSPKINKLGGSDWAKAKKKVKKSIEEIAEDLVKLYA
IRSTLKGYKYSKDTVWQKQFEDEFPYEETPDQLTTIQDIKQDMESDKVMDRLLCGDVGYG
KTEVAVRAAFKAVMDGKQVAFLVPTTILAQQHYNNFVQRFSDFPVKIDMISRFRTTAQQK
ASIKAVKVGDVDILIGTHRILQKDVQFKDLGLLIIDEEQRFGVSHKEKIKKIRKNVDVLT
LSATPIPRTLHMSLVGARDISVIETPPEERYPIQTYVVEYNDQLIRDAILREINRGGQVY
FVYNRVESIKEMASYIAKLIPEAKVAVAHGQMQERELENIIVDFMKNEYNILVATTIIET
GMDIQNVNTMIIYDADKMGLSQLYQLRGRVGRTNRMAYCYLSYRRDKVLTEVAEKRLKAI
KEFTELGSGFKIALKDLEIRGAGNMMGSSQHGHMAAVGYDLYCRMLEDTIKLIKGDIDKE
PVETTVELKIDAYIPDNYIKSEVQKIEIYKKIAAISSYDDMLDIKEELEDRFSDIPTSVY
NLMDISYIRSMSKKIGIEEIKEVRDEVVFSFQDQNRVDKNVLRELFKTYPHEFVLKMNKK
PGFGYKLKNVKREDILHQIKEIVKYMLKIYEQK
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgagattagatggacttataaaacctatgagggaaagcagagaatttaaaaatattgtt
gatggaataagcaaaaaaaagtttcctataggcgtatttggactttcagagtcagctaaa
agttacttaatatatggagtgtataatgaaatagacaagcctttcctaattgttactcat
agtgatgtagaagccagaaaactatatgaagatctatccttttatttagcagaagtatac
tattttcctactaaagagatggtattttataatatagatgccatatcaggagatttgagg
tgggaaaggttaaaggtaataaggaaaatgatagatacaggtagaaaaattataataact
tgtgtggaatctctagcatctacatatatacctgtagagttatatgaaaattatataatt
aacatatctgtaggcaacgttttaaatttaaaagatataagtgagaaattggttcaaggt
ggttatgaaaaaaatgaaattgtggattcaaaaggtcaattttccataagaggcgacata
atggatatatactcaccaatagctgcagaagcatatagaatagagctatttggggatgaa
gtagaatctattagaactttaaatttagaatcacagagaagcattgataaaatagacagt
atagaaatatttcctgctaaagagattatacttgataaggataagattcaaaagggaaga
aaaagtatagaagatgacgcagctctagtagaaaagaaattaaaaaagagcaagaataaa
gaagcattagatagaatagatgagttaacaaagaaaaacttagagaatctagaggagaat
tggagttttgaaaatattgatagttttcttccatatttttatgataagcctacttctttc
cttgattatactaaggactattttatagttatggatgatgtacagaggtgtttcgggaaa
ttaaatagtgtatattttgaatttgaagaaaattataaaagccttttagagaagggaaat
atacttcccaaacagagcaaaatgttatgtgcaaaatctgatttacttgaagaacttaaa
aataaggaaattatgacattagatgctattgctaagtcctctaaggttattcaacctaaa
actataactaatttttctcagataactttaaatagttaccaaggacagatggatctactt
attgaggatattaaggataaaaagtctagaggatataaaattctgattttatctggaaca
agacctagaggagaaagattggtagacactttaagggaaagaggcatagaaagtagctat
agagatgttattcatgagattaaatcaggggaagttgttataacttttggaagtcaactc
aaaggttttgaatatccagattttaaagtaggagttatatcagataaagaagtttttggt
aaagcaaaaaagaagaatacaaggaaggttcctaaaaagggagtaagcaaaataaaaagt
tttgcagaacttaagtccggggattttgtagtacatgtaaatcatggtataggaatatac
aaagggataaagcagctggaagttcagggtcacaagaaggattatttggaacttatgtat
gactccgaagataaactgtatgtgcctgtagaacaattggatatggtgcaaaaatatata
ggatctgaaggaaagagtcccaaaataaataaattgggaggatcagattgggctaaagcg
aagaaaaaggtaaagaaatcaatagaggaaatagctgaagatttagtaaaattatatgca
attaggtctactttaaaaggttacaagtattcaaaggatacagtatggcaaaaacagttt
gaggatgagttcccctatgaagagacaccagatcaacttacaactatacaggatataaag
caggatatggaatcagataaggtaatggacagattactttgtggggatgtaggatatggg
aaaacggaagtagcagtaagagctgcttttaaggctgttatggatggaaaacaagttgca
tttttagtcccaactacgatacttgcgcaacaacattataataattttgttcaaaggttt
tctgattttcctgtaaaaatagatatgataagcaggtttagaacaacagcacagcaaaaa
gcatccataaaggcagttaaagtaggagacgttgatatattaattggtactcacagaata
ttacaaaaagatgtacaatttaaagatttaggacttcttataatagatgaggaacagagg
tttggagtaagtcataaggaaaagatcaaaaaaattagaaaaaatgtagatgtacttacg
ttaagtgctacacctatacctaggacattgcatatgtctctcgtaggggctagggatata
agtgttatagagacacctccagaggaaagatatccaattcaaacttatgtagtagaatat
aatgatcaattaataagagacgccatattaagagaaataaatagagggggacaggtttat
tttgtatataatagagttgagagtataaaagaaatggcttcttatatagccaaactaatt
ccagaggcaaaagtagctgtggcccatggacaaatgcaggaaagagaacttgaaaatata
atagttgattttatgaaaaatgagtataatattttagtagcaactactattatagaaacc
ggtatggatatacagaatgtaaatacaatgataatatatgatgctgataaaatgggttta
tcacaactataccaattaagaggaagagttggaagaactaatagaatggcttactgttac
ttgagctatagaagagataaggttcttacggaagtagcagaaaaaaggcttaaagctatt
aaagaatttactgaacttggatctgggtttaaaatagcactaaaagatttggaaataaga
ggtgcaggtaatatgatgggatcatcacagcatggtcatatggctgctgtaggttatgat
ctctattgcagaatgctggaagatactataaagcttataaaaggagatatagacaaagaa
cctgtagaaactaccgtagaattgaaaatagatgcatatatacctgataattatataaag
agtgaggttcagaaaatagaaatatataagaaaatagcagctataagttcctatgatgat
atgcttgatataaaagaggaattggaagatagattctctgatataccaacttcagtatac
aacttgatggatatatcctatataagaagtatgagtaagaaaatcggcatagaggagata
aaagaagtaagggacgaagtcgttttttcatttcaagatcaaaatagggttgacaaaaat
gtgcttagggaactttttaaaacttatccacatgagtttgtgttaaagatgaataaaaag
cccgggtttgggtataaattaaaaaatgtaaaaagagaagatattttacatcagattaag
gaaattgtgaaatatatgctaaaaatatatgaacaaaaatag
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