Campylobacter lari RM16701: UPTC16701_1193
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Entry
UPTC16701_1193 CDS
T03550
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
clr
Campylobacter lari RM16701
Pathway
clr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UPTC16701_1193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clr03019
]
UPTC16701_1193
Messenger RNA biogenesis [BR:
clr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
UPTC16701_1193
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
HDOD
KH_1
KH_PNO1_2nd
KH_2
dUTPase
KH_KhpA-B
MurD-like_N
Motif
Other DBs
NCBI-ProteinID:
AJD05225
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All DBs
Position
1176460..1178013
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AA seq
517 aa
AA seq
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MIEILVALIAVFIGGGIGYIVAKKINDANFNIFLEQAKAKAKAIEYEAELTLKDAKNSVA
EAEFAAKKKFDEKIQKLQKEHSIKLEELNKKEQNLHYQEKLHEENKNKLAKEQQAIKALH
EENENLKQNYETKLSEVLKILEHSAGLTQEEAKNIVLQKVEENSRAEIAHIVRKYEEEAR
NEAKRKANFILAQATSRFAGEFAAERLINVVNIKNDELKGRIIGKEGRNVKTLEMVLGVD
IIIDDTPGAIIVSCFNLYRRAIATKVIELLVEDGRIQPAKIEEIHEKVCKEFEDNILEEG
QTIVMDLGLNNIHPEIVKLIGKLRYRASYGQNALAHSLEVAHLAGIIAAECGGDEKLARR
AGILHDIGKALTHEFEGSHVDLGAELCKRYKEHPVVINAIYAHHGHEEAISIESAAVCTA
DTLSAARPGARREVLEAFLKRVSELEDIAKSKEGVKKAYAINAGREIRVIVNAKLVNDDE
SALLAKEIAEEIQEKVQYPGEIKVNVIRELRAIDFAR
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgatagaaatattagtcgcattaatagccgtttttataggcggagggattgggtatata
gtcgccaaaaagattaatgatgcaaatttcaatatctttttagagcaagcaaaagcaaaa
gcaaaagccattgaatatgaagctgaactaacacttaaagatgctaaaaattcggttgct
gaagctgaatttgcggcaaagaaaaaatttgatgaaaaaattcaaaaacttcaaaaagag
cattctattaaactagaagagcttaataaaaaagaacaaaatcttcattatcaagaaaaa
cttcatgaggaaaataaaaacaagttagcaaaagaacagcaagctataaaagctttacat
gaagaaaatgaaaatttaaaacaaaattatgaaacaaagcttagtgaagtattaaaaatt
cttgaacattcagctggtcttacacaagaagaagcaaaaaatatagttttacaaaaagta
gaagaaaactcaagagctgagattgcccatattgttagaaaatacgaagaagaagctaga
aatgaagctaaaagaaaggctaactttatcttagcgcaagctacttcaagatttgcagga
gaatttgctgctgaaagattaatcaatgtagtaaatatcaaaaatgatgagctaaaaggt
cgtattataggtaaagaagggagaaatgttaaaaccctagaaatggttttgggtgttgat
attatcatcgacgatacacctggagcgattatagtaagttgttttaatctttatagacgc
gctattgctacaaaagtaattgagcttttagttgaagatggcagaattcaacctgcaaaa
atagaagaaattcatgaaaaagtttgcaaagaatttgaagataatatcttagaagaaggt
caaactatagtaatggatttaggacttaataatatccatcctgaaattgttaaattaata
ggaaaattaagatatagagcaagttatggccaaaatgctctagcacattctttagaagtg
gcacatttagctggaatcatagcagctgagtgtggcggggatgaaaaattagcaagaaga
gctgggattttacacgatataggcaaggctttaacacacgaatttgaaggctctcatgtg
gatttaggagctgaactttgcaaaagatacaaagaacatccggttgtgattaatgcaatt
tatgctcatcatgggcatgaagaagctattagcatagaatcagctgcagtttgtacagca
gatacactaagcgctgcacgccctggagcaagacgtgaagttttagaagccttcttaaaa
agagtgagcgaacttgaagatatagcaaaaagcaaagaaggggttaaaaaggcttatgct
attaatgctggtagggaaattagagttattgttaatgcaaaattagtcaatgatgatgaa
tctgcgcttttagccaaagaaatagctgaagaaattcaagaaaaagtacaatatcctggt
gaaataaaagtcaatgtcatcagagagcttagagctattgattttgcaagataa
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