Clostridium sp. SY8519: CXIVA_02260
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Entry
CXIVA_02260 CDS
T01565
Symbol
UvrB
Name
(GenBank) helicase subunit of the DNA excision repair complex
KO
K03702
excinuclease ABC subunit B
Organism
cls
Clostridium sp. SY8519
Pathway
cls03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cls00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CXIVA_02260 (UvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cls03400
]
CXIVA_02260 (UvrB)
DNA repair and recombination proteins [BR:
cls03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CXIVA_02260 (UvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CXIVA_02260 (UvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_22
AAA_30
DUF87
UB2H
Kinesin
AAA_5
Microtub_bd
AAA_16
AAA_33
Motif
Other DBs
NCBI-ProteinID:
BAK46193
UniProt:
F7V7T3
LinkDB
All DBs
Position
complement(217577..219562)
Genome browser
AA seq
661 aa
AA seq
DB search
MDHFVLHSKYQPTGDQPAAIEDLVRGFQEGNQFQTLLGVTGSGKTFTMANVIARLNRPTL
IISHNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDK
LRLSATAALSERRDVIIVASVSCIYGLGSPVDYQNMCVSLRPGMEKDRDEVIRKLVEMQY
SRNDMDFQRGTFRVRGDVLEIFPADKGETAVRVEFFGDEVDRITEIDVLTGEIRSELKHI
AVFPASHYVVPQEKINEAVIGIEEELKERVNYFKREDKLLEAQRIAERTNFDIEMLRETG
FCSGIENYSRHLAGLAPGTPPYTLIDYFPDDFMIMVDESHITIPQIRGMYFGDQSRKTTL
VDYGFRLPSAKDNRPLNFEEFEGKINQMLFVSATPNTYEEEHELLRTEQIIRPTGLLDPA
VEVRPVEGQIDDLVGEVRKETQRGSKILITTLTKRMAEDLTGYMKEIGIRVRYLHSDIDT
LERAEIIRDMRLDVFDVLVGINLLREGLDIPEISLVVILDADKEGFLRSETSLIQTIGRA
ARNDRGHVIMYADVITDSMRAALDETERRRRIQMEYNEAHGITPQTIHKEVRDLISISKK
AASADTELKKDPESMNRKELEQMIRKITEKMKKAAADLDFETAAVLRDQMIELKKHLQEA
G
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggatcattttgtgcttcattccaagtatcagccgaccggggatcagccggcggcaatt
gaagatctggtcaggggatttcaggaaggcaatcagtttcagacacttcttggggttacc
ggatccggcaagacatttaccatggcaaatgtgattgccagactgaaccgccccacactg
atcatttcccataataagacgctggctgcgcagctgtacggagaattcaaggaatttttc
ccggaaaacgcagtggagtattttgtctcctattatgattactatcagccggaagcctat
gtgccgtccacggatacctatattgaaaaagacagcgcgatcaatgacgaaatcgacaaa
ctgcgcctgtcagccacagccgccctgtccgagcgcagggatgtcattatcgtcgcgtcc
gtttcctgtatctacggcctcggaagcccggtggattatcagaatatgtgtgtgtccctg
cggccgggtatggaaaaggacagagatgaagtcatccgcaaactggtggaaatgcagtat
tcccgaaatgatatggactttcagcgcggcacgttccgggtgcggggagatgtgctggag
atttttccggcagacaaaggggaaactgccgtccgggtggagttcttcggcgatgaagtg
gaccggatcacggagattgatgtgctgaccggggagatccgcagcgagctgaagcatatc
gcggtatttccggcctcccattatgtagttccccaggagaaaatcaatgaggcggtcatt
ggaattgaggaagaactgaaggaacgggtgaattatttcaaacgtgaggacaaactcctg
gaagcccagagaatagcggaacgcaccaattttgacattgagatgctgcgggaaaccggg
ttctgttccggtattgagaattattcccggcatctggcgggactggcgccgggtacgccg
ccttatacactgatcgattatttcccggatgattttatgatcatggtcgatgagtcccat
atcacgattccccagatccggggaatgtatttcggagaccagtccagaaaaaccactctg
gtggattacgggttccgcctgccttccgccaaggacaaccggcccctgaattttgaggaa
tttgaaggaaaaatcaatcagatgctgtttgtgtccgcgacaccgaatacctacgaagag
gagcatgagctgctgcgcaccgaacagattatccgcccaaccggtctgctggatcccgca
gtggaagtgcgtcctgtggagggacagatcgacgatctggtcggggaggtccgcaaggaa
acccagcggggcagcaagatcctgattaccactctgaccaagcgcatggcagaagatctg
accggttatatgaaagaaatcggaatacgggtccggtatctgcactcggatattgacacc
ctggagcgggcggaaatcatccgggatatgcgtctggatgtgtttgatgtgctggtgggc
atcaacctgctgcgggaaggcctggatattcctgagatttccctggtagtcattctggac
gcggacaaggagggatttctccgttcggaaacatccctgatccagaccatcggccgtgcg
gcccgcaatgaccgggggcatgtgattatgtacgcggatgtgataacggattccatgcgc
gcggctctggatgaaacggagcgcagacgcaggattcagatggaatataacgaagcccat
gggattacgccgcagacgattcacaaggaagtccgggacctgatcagtatatccaaaaag
gcggcatctgcggatactgagctgaaaaaagatccggaatccatgaacaggaaagaactg
gaacagatgatccgcaaaattaccgaaaaaatgaagaaagcagcagccgatctggatttc
gagacggcagccgtgctgcgggatcagatgatcgaattaaagaagcatctgcaggaagca
ggctga
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