Cyclopterus lumpus (lumpfish): 117725291
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Entry
117725291 CDS
T09199
Symbol
srsf5a
Name
(RefSeq) serine and arginine rich splicing factor 5a isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03040
Spliceosome
clum05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117725291 (srsf5a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117725291 (srsf5a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clum03041
]
117725291 (srsf5a)
Spliceosome [BR:
clum03041
]
Common components
Common spliceosomal components
SR proteins
117725291 (srsf5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_occluded
RRM_5
Nup35_RRM_2
CDC45
Motif
Other DBs
NCBI-GeneID:
117725291
NCBI-ProteinID:
XP_034381272
Ensembl:
ENSCLMG00005018383
UniProt:
A0A8C3A9W4
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All DBs
Position
22:complement(17924549..17929591)
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AA seq
318 aa
AA seq
DB search
MSGCRVFIGRLSPHARERDVEKFFKGYGRIREINLKNGFGFVEFDDHRDADDAVYELNGK
ELCSERVTIEHARSRRGRGGGPGGMGGRFGGGGGGGGGGGGGGSSSGGGGGYRPSRSSGS
RLDRYGPPVRTDHRLIVENLSSRISWQDLKDLMRKAGEVTFVDAHRPNKNEGVVEFASRS
DLKNAISKLDGSELNGRKLKIFEDSRSKSRSRSRSYSRSKSRSRSRNRSRSRSRSLSRTP
EKKTSGGGRASGRSPSRSKSRSKSRSKSRSKSRSKSRSRSRSRSPAPAQNKQSRSRSRSR
SRSRSRSRSRSASADSKH
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgagtggttgtcgtgtcttcatcggccgcctgagcccacacgccagggagagagacgtg
gagaaatttttcaagggctatggccgaattagggaaattaacttgaagaatggatttggc
tttgtggaatttgatgaccacagagatgcagatgatgccgtctacgagttgaacggcaaa
gaattgtgcagtgaaagggtcactattgagcatgctcgctccagaagaggacgaggtggg
ggccccggaggaatgggaggacgtttcggcggtggcggaggaggtgggggtggaggtgga
ggtggtggaagcagcagtggcggcggcggtggctatcgtccatctcgcagcagtggctcc
agactggacaggtatggcccccctgtgcggacagatcacagactaattgtggagaacctc
tcttcacgaatcagctggcaggacctgaaagacctcatgagaaaagcaggtgaagttacc
tttgtggacgcacacagacctaacaaaaatgaaggagtggttgagtttgcatcccgcagt
gacctgaagaacgccatctccaagctcgacggatcagagctgaatggacgcaagcttaag
atctttgaggacagcagaagcaagagccgctctcgctcccgcagctactcccgctcaaag
agtcgttccaggagccgcaaccgttccaggagccgctccaggtccctgagtcgcacccca
gagaagaagacgtccggtgggggcagggcgtcaggcagatccccctccaggtctaagtcc
aggtccaagtctcgctcaaagtctcgctcaaagtccaggtctaagtccaggtccaggtct
cgctcccgctcacctgcccctgctcagaacaagcagtcccgttcacggtctcgctcccgg
tccaggtctcgttccaggtctcgctcccgctccgcctctgcagacagcaagcactaa
DBGET
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