Cyclopterus lumpus (lumpfish): 117726173
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Entry
117726173 CDS
T09199
Symbol
cacna1c
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1C
KO
K04850
voltage-dependent calcium channel L type alpha-1C
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04010
MAPK signaling pathway
clum04020
Calcium signaling pathway
clum04260
Cardiac muscle contraction
clum04261
Adrenergic signaling in cardiomyocytes
clum04270
Vascular smooth muscle contraction
clum04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117726173 (cacna1c)
04020 Calcium signaling pathway
117726173 (cacna1c)
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
117726173 (cacna1c)
09153 Circulatory system
04260 Cardiac muscle contraction
117726173 (cacna1c)
04261 Adrenergic signaling in cardiomyocytes
117726173 (cacna1c)
04270 Vascular smooth muscle contraction
117726173 (cacna1c)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
clum04040
]
117726173 (cacna1c)
Ion channels [BR:
clum04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
117726173 (cacna1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
CAC1F_C
Motif
Other DBs
NCBI-GeneID:
117726173
NCBI-ProteinID:
XP_034382182
Ensembl:
ENSCLMG00005012387
LinkDB
All DBs
Position
23:complement(7853852..8025425)
Genome browser
AA seq
2291 aa
AA seq
DB search
MLRGLFQRKPKHERLEEEPEVRFKGLLVSERDLGYTYVRPGGSDYSPPPPLPPPVLTNEL
SGGGDHGGGGDGVNHGVGVVGVVGLAPEHIATPGAAISWQAAIDAARQAKIMGNPASGGG
AGLAAGGGGPISTVSSTQRKRQHYSSKPKKQTTTTATRPPRALLCLTLKNPIRRACISIV
EWKPFEIIILMTIFANCVALAVYIPFPEDDSNATNSNLERVEYLFLIIFTVEAFLKVIAY
GLLFHPNAYLRNGWNLLDFIIVVVGLFSAILEQATKGDGGTPIGGKAAGFDVKALRAFRV
LRPLRLVSGVPSLQVVLNSIIKAMVPLLHIALLVLFVIIIYAIIGLELFMGKMHKTCNHE
HTGNIAEEKPAPCAPEGAYGRHCNHNGTECKMGWEGPNKGITNFDNFAFAMLTVFQCITM
EGWTDVLYWMQDAMGYELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAKARGDFQ
KLREKQQLEEDLKGYLDWITQAEDIDPENEEEGMDDDKPRNLSMPASENESVNTDNAPGG
DVEGETCCTRLANRISKSKFSRYSRRWNRLCRRKCRAAVKSQVFYWLVIFLVFLNTLTIA
SEHHQQPQWLTEVQDIANKVLLALFTGEMLLKMYSLGLQAYYVSLFNRFDSFVVCGGILE
TILVETKIMSPLGISVLRCVRLLRIFKITRYWNSLSNLVASLLNSVRSIASLLLLLFLFI
IIFSLLGMQLFGGKFNFDETRRSTFDNFPQSLLTVFQILTGEDWNSVMYDGIMAYGGPSF
PGMLVCIYFIILFICGNYILLNVFLAIAVDNLADAESLTSAQKEEEEEKERKKLARLASP
EKRHANEKPPLEEVKKKEKKKKKEKIELKSITSDGETNTATKITMDDYGGDESEEKNPYP
ANDYIGDEEDEEPEMPVGPRPRPLSDIHLKEKAIPMPEARAFFVFSHTNQFRVLCHKIVN
HNIFTNLILFFILLSSISLAAEDPVKNDSFRNQILGYADHVFTGLFTIEIILKMTAYGAF
VHKGSFCRNYFNILDLVVVSVSLISSGIQSSAINVVKILRVLRVLRPLRAINRAKGLKHV
VQCVFVAIRTIGNIVIVTTLLQFMFACIGVQLFKGKFFFCTDSSKQTQAGCRGYYIMYKD
GDVTKPERAHREWENSDFNFDDVLQGMMALFAVSTFEGWPGLLYRAIDSHAEDVGPVYNY
RVVISIFFIIYIIIIAFFMMNIFVGFVIVTFQEQGEQEYKNCELDKNQRQCVEYALKARP
LRRYIPKNPYQYKVWYVVNSTYFEYLMFTLILLNTICLAMQHHGQTIHFDDAMNILNMLF
TGLFTVEMILKLIAFKPRGYFSDPWNVFDFLIVIGSIIDVILSEINPADSSSSSPTMNSE
ENARISITFFRLFRVMRLVKLLSRGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIG
MQMFGKIALRDHTQINRNNNFQTFPQAVLLLFRCATGEAWQEIMLVCSPVQPCEKGSTNE
TNLAPEDCGSQFAIIYFVSFYMLCAFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKR
IWAEYDPEAKGRIKHLDVVTLLRRIQPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVMFN
ATLFALVRTALRIKTDGNLEQANEELRAIVKKIWKRTSMKLLDQVVPPAGDDEVTVGKFY
ATFLIQEYFRKFKKRKEQGLVAKVAPKTALSLQAGLRTLHDIGPEIRRAISGDLTVEEEL
DKGLKEPVSAASEDDIFRRTGGLFSNHVNYYNQSDGRASFPQSFTTQRPLHISQQGSPCE
VESPSHEKLMDSTTFTPSSYSSSGSNANINNANNTGMIGVVTQGISRFPSPSISTVDGHT
GQPLTPILLPRSAWCFPPKRTCFYDTLMRSDSSDSRRPIIRRGEGSTEETYDESYGDDRE
YHEDDHSLSSDMLVYHDETCKQLNPMEEGEEVEDRRGGGEGGWQSPRRVFLCPTTLARRS
SFHLECLRRHSRPDVSQRTSVPLHLVHHQALAVAGLSPLLRRSHSPTLFSRLCSTPPASP
TAHCSDASYQRVPSLRLEGLYSHEKLNTSLPSVNCGPWYSDSNGNSRVPSPNPSVSNQRP
PRPLSLTVPSLPGKDSSSLCHGSAGSLVEAVLISEGLGHFAQDPSFIEVTKAELADACDM
TIEEMEHAANNILNGNTATNATSSTSSTSQHSPNGNLLPFHTAAATHRDQVVSEGEEEAG
GSRGSVHGPSSLEERQELLAEERGREEEEEEEEEVEEREEGQHRSSVVIGGERQRNSRLL
EDEDMECVTSL
NT seq
6876 nt
NT seq
+upstream
nt +downstream
nt
atgctgagaggcctgtttcagaggaaacctaaacatgagagactggaggaagaacctgag
gtcagattcaaaggcttgctggtgtcagagagagacctgggatatacatacgtccggcct
ggaggctccgactactctccccctcccccacttcctccccccgtcctcaccaacgagctc
agtggcggtggcgaccatggtggaggaggggacggggtcaaccacggggtgggcgtggtg
ggcgtggtgggcctggccccggagcacatcgccacaccgggggcggccattagctggcag
gcggcaatcgacgccgcgcggcaggcgaagataatgggcaaccccgcatcgggcggaggg
gcggggcttgcggcaggagggggcgggcccatctccacggtcagctccacacaaaggaag
agacaacactatagctctaagcccaagaaacagacaacgacgacagccacaaggccgcca
cgggccctactctgtctcacactcaagaaccccatccgcagagcctgcatcagcattgta
gagtggaaaccatttgagatcatcatcctgatgaccatttttgccaactgtgtggcctta
gccgtctacatccccttccctgaggacgactcaaacgccaccaactccaacctggagcgt
gtggagtatctgttcctcatcattttcacggtggaggcattcttgaaggtaatagcctat
ggcctgctcttccaccccaacgcctacctgaggaacggctggaatctgctcgacttcatc
atcgtagtagtagggttattcagtgcgatcttggagcaggccaccaagggggacggaggc
actcctattggagggaaggcagcgggcttcgatgtcaaggctctcagggcattcagagta
ctcagacccctcagactggtctctggagtacccagtttacaggtagtgttgaactccata
atcaaagccatggttcctctgctccatatcgccctgctggtcctcttcgtgatcatcatc
tatgccatcattggcctggagctcttcatgggcaagatgcacaagacctgcaatcacgag
cacacaggcaacattgcagaggaaaagccggcaccgtgtgcacctgaaggggcttacggt
cgacactgtaaccacaacggaacagagtgcaagatgggatgggagggcccaaacaaaggc
atcaccaactttgacaactttgcctttgccatgttgacggtgttccagtgtataaccatg
gagggctggacggacgtgctgtactggatgcaggatgctatgggctatgagctgccatgg
gtctattttgtctctctcgtcatcttcggctcctttttcgttctcaatctcgttctgggg
gtgttgagcggagagttttccaaggagagagagaaggccaaggcacgtggtgacttccag
aaactcagagaaaaacagcaactggaggaggacctcaagggatatttagactggatcact
caggctgaagacattgacccagagaatgaagaggagggcatggacgatgataaacctaga
aacctgagcatgccagcaagtgagaatgaatcagtcaacacagacaatgcccccggggga
gacgtggagggggagacctgctgtacccggctagcaaataggatctccaaatccaagttc
agtcgatactctcggaggtggaacaggctgtgtaggaggaagtgccgggcagcggtcaaa
tcccaggttttctattggctggtcatcttcctggttttcctcaacactctgaccatcgcc
tctgaacatcaccagcagcctcagtggttaacggaagtccaagacatagccaacaaggtg
ttgctcgcactcttcactggtgagatgctgttgaagatgtacagtctgggtctgcaggcg
tactatgtctcgctcttcaatcgcttcgacagctttgtagtatgtggaggaattcttgag
accattctggtggaaaccaagatcatgtctcctctcggcatctcagtgttgcgctgcgta
cgcttgctgagaatcttcaaaataaccagatactggaactccctgtccaacctggtggca
tcccttctaaactctgttcgctccattgcttccctgctgctcctgctcttcctcttcatc
atcatcttctccctgctcggcatgcagctgtttggggggaagttcaacttcgacgagacc
agacggagcacctttgacaactttccccagtcattgctcactgtgtttcagatcctaacg
ggagaggactggaactctgtgatgtatgatggtatcatggcgtacggtggaccatccttc
cccggcatgctggtctgcatctactttatcatcctcttcatctgcggaaactatatctta
ctgaatgtcttcttggccattgctgtcgacaatctggctgacgctgagagcctgacatcc
gcccagaaagaggaggaagaggagaaggagaggaaaaaactcgccaggttggccagtcca
gagaaacgtcatgccaacgagaagccgcctctggaggaggtgaagaagaaggagaagaag
aagaagaaggagaagatagagctgaagtccatcacctctgatggagagacaaacactgct
actaagattaccatggatgactacggtggagatgagagtgaagagaagaacccatatcct
gccaatgattacataggagacgaagaggacgaagagccagagatgccagtggggccgagg
ccccggcccctctccgacattcatctgaaggagaaggccattcccatgcctgaggcccgc
gccttcttcgtcttcagccacaccaaccaattcagggttctgtgccataagattgtcaac
cacaacatcttcacaaacctcatcctcttcttcatcctgctcagcagcatcagtctggca
gcagaagacccggtcaaaaacgactccttcagaaaccagatcctgggctatgcagaccat
gtctttaccggactcttcaccatagagatcattcttaagatgacagcctatggggccttc
gtccataaaggttcattctgtagaaactatttcaatattttggacctggtggttgtcagt
gtgtctctcatctcctctggaatacagtccagtgcaattaatgtggtgaagatcctgaga
gtcctgcgagtgctcagacccctgagggccatcaacagagccaaaggcctgaagcatgta
gtgcagtgcgtctttgtggccatccggaccatcggcaacattgtcatcgtcaccacgttg
ctccagttcatgtttgcatgtatcggagtacagctctttaagggcaagttcttcttttgt
accgacagctctaaacaaactcaggcaggttgcaggggctactacataatgtataaggat
ggtgatgtgacgaagcctgaaagagcccacagagagtgggagaacagtgactttaacttt
gacgacgtcctgcaaggcatgatggctctgtttgctgtgtcgacctttgagggctggcca
gggttactgtaccgggccatagactctcatgctgaggacgtcgggcccgtctacaactac
cgcgtggtcatctccatcttcttcatcatctacatcatcatcatcgccttcttcatgatg
aacatcttcgtcggtttcgtcatcgtcacattccaggagcaaggagagcaggaatataag
aactgtgagctggacaagaatcagcgtcagtgtgtggaatatgctttgaaggcccggccg
ttgcgtcgctacattcctaaaaacccttaccagtacaaggtgtggtatgtggttaactcc
acctactttgagtacctgatgttcacactcatccttctcaacaccatctgtctggccatg
cagcatcatggacagacaattcatttcgatgatgccatgaacatcctcaacatgctcttc
actggactcttcactgtggagatgatcctgaaactgattgccttcaaacccagggggtac
tttagtgatccctggaatgtgtttgatttcctcatcgtaattggcagcataatagacgtc
attctcagtgagatcaacccagctgactcctcctcgtcctcgccaaccatgaactctgaa
gagaacgccaggatctccatcaccttcttccggctgttccgcgtgatgaggctggtgaag
ctgctgtctcgcggggaagggattcggaccctgctgtggaccttcatcaaatccttccaa
gctctgccctacgtagctctgcttatagtgatgctattcttcatatacgctgtcatcggc
atgcagatgtttggtaagatagcgctgcgagaccacacacagatcaacaggaacaacaat
ttccagacgttccctcaggcagtgctgctgctcttcagatgtgcaacaggtgaggcatgg
caggagatcatgctggtgtgttcgcccgttcagccgtgtgagaagggatcaaccaatgag
accaacttggcccccgaggactgtggcagccagtttgccatcatttactttgtcagcttc
tacatgctctgtgcctttctgatcatcaacctgtttgtggccgtcatcatggacaacttt
gactacctgacacgtgattggtcaatcctggggcctcatcatcttgacgaattcaagagg
atctgggctgaatatgacccagaggctaaagggagaataaagcacctggatgtagtgact
ctgctgcgaagaatccagcccccactgggctttggaaagctctgtccacacagagtagcc
tgcaagcgcctggtgtcgatgaacatgcctctgaacagcgatggaaccgtgatgttcaat
gccacgctgtttgccctggtcagaaccgcactcaggatcaagacagacggaaacctggag
caggccaatgaggaactgagagctatagtgaagaagatctggaagagaaccagcatgaag
ctcttggatcaagtagtgccccctgctggagatgatgaggtaacagtcgggaagttctac
gctaccttcctcatccaggaatattttcgcaagtttaagaagaggaaagaacaagggctg
gtggccaaggtggcccccaaaactgccctttctctgcaggcgggcctgcggacattgcat
gacattggtccagagattcggagggccatatctggagacctgacggtggaggaggagctg
gataaaggcctgaaggagcctgtgtcggctgcatccgaggatgatatcttcaggcgtacg
ggtgggttgttcagcaaccacgtcaactactacaaccagagcgatggccgcgcctccttc
ccacagtccttcactacccagcgtcctttgcacatcagccagcagggctccccttgcgaa
gtcgagagtccgtcccacgagaagctcatggactcgaccactttcaccccttcctcttac
tcctcatcgggctccaatgccaacatcaacaatgccaacaacaccggcatgatcggggtg
gtgacccagggcatcagtcggttcccgagcccgtccataagcactgtggacgggcacaca
ggacagccgctcacccccatcctgctgccaaggtccgcgtggtgctttcctccaaagagg
acgtgtttttatgacaccctcatgcgctcggattcaagtgacagccgtcggccaatcatc
cggagaggcgaggggtcaacggaggagacgtatgatgagagctacggcgacgacagggag
taccacgaggacgaccactcgctctcctctgacatgctggtgtatcacgatgaaacgtgt
aagcagttgaatcccatggaggaaggagaagaggtagaagacagaagaggaggaggagaa
ggagggtggcagtctcccaggagagtcttcctctgccccaccactctggcgcgtagatcg
tctttccatctggagtgtctcaggagacattcgaggccagatgtctcccaaaggacgtct
gtaccgctacatcttgtgcatcatcaggctctggcagtcgcagggttgagtcctctgcta
agacggagtcactcacctaccctcttcagccggctgtgctccacgcctccagccagtccc
acagcccattgcagtgatgcctcctaccagcgagtgccctctctgaggctagagggctta
tactcgcatgaaaagctcaatacgagcttgccctctgtcaactgcgggccctggtacagc
gacagtaatgggaacagccgggttcccagtcccaaccccagtgtgtctaatcaaagacca
ccacggccgttgtcgctcacagtgccctcgctaccgggaaaagactccagctcgctgtgc
cacggcagtgcaggcagtttggtggaggcagtgctaatatcagagggtttgggccatttc
gcccaggacccgtcgttcatcgaggtgaccaaagccgagttggccgacgcatgtgacatg
accatcgaggagatggagcacgccgccaacaacattctcaacggcaacaccgccacgaac
gcaacatccagcacctcctccacctcccagcacagtcccaacggcaacctcctccccttc
cacacagcagcagcaacgcacagggaccaagtggtcagcgaaggcgaggaagaagccgga
ggaagcagaggttccgtccacgggccgtcctcactggaggagcggcaggagctgctcgca
gaggagaggggacgagaagaggaggaggaggaagaggaagaggtggaagagagggaagag
gggcagcacagaagctcggttgtgattggaggagagcggcagaggaacagcaggctgttg
gaggacgaggatatggagtgtgtgacgagtttgtag
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integrated database retrieval system
