Cyclopterus lumpus (lumpfish): 117729260
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Entry
117729260 CDS
T09199
Symbol
zgc:172302
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum02010
ABC transporters
clum04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
117729260 (zgc:172302)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117729260 (zgc:172302)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
clum02000
]
117729260 (zgc:172302)
Transporters [BR:
clum02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
117729260 (zgc:172302)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
KAR9
Motif
Other DBs
NCBI-GeneID:
117729260
NCBI-ProteinID:
XP_034386066
Ensembl:
ENSCLMG00005007451
LinkDB
All DBs
Position
4:complement(14249778..14280625)
Genome browser
AA seq
2380 aa
AA seq
DB search
MGFLQQLSLLLWKNITYRRRNKIQLIIELLWPLFLFVILISVRHSHPPYKQSQCHFPNKA
LPSAGTLPWIQGIICNINNPCFHSPTPGETLGQVGNFDNSILSRLFMDAQTILSYSGNRR
FSGFQDLMESVQRLGERPGAWPNLPVEEYLRANETFSSFLLTNGNLSSVTVGQLLKARLN
FQVSVAGAQMQLKDLVCNASMLGQFLKVDEGEATMNDLQTQLCNLPADVLQKAERLFLSQ
LDFTKFFTRERLMANAGDLRLISQAVTSVSQELAVLIDDFSSLSSFADMSTALRFLSPEN
RSALPRESFRAFSRIMCGHPEVGGERIPSLNWYEDNDIKSFLGKNGTEDTDPDRDNNTTP
FCKSLIHGLESNPLSRLVWRGIKPLFIGKLLYTPDTPAVQQVMKEMNKTFEDMQILQELN
AAWMEVGPQIKNYMESSVEIQLLQDLLRRPEVAVLVNLRLENTSWTASRIARFLATPSPD
AQRKPSAPPTWLDIYNDLSHTITTLAQVTECFSLNKLEGLETEGQMIDRALELLEDRQFW
AGVVFLLPNSSSPDLPPHVTYKIRMDIDDVTRTNKIKDRFWDPGPAADPFNDMRYIWGGF
VYVQDLVERAVSRMLTGVQQTTGIYIQQMPYPCYVDDVFLRVLNRSLPLFMTLAWIYSVA
MIIKGVVYEKEARLKETMRIMGLGTGTLWLSWFITSIVPFLVSAGLLIALLKWGDILPYS
DPSVVFFFLTAFATATIMQCFLISTFFSKANLAAACGGLIYFGLYLPYVLCVAWRDRLNT
TYRVLASFLSPVAFGFGCEYFSQYEEQGVGIQWYNLHSSPVEGDSYSFTTSIIMLYLDAF
IYGTAAWYIEAVFPGEYGISRPWYFIFQINYWGGVPLEAGMPIPPAPAEQDEEHIEPEPT
DLILGVSVRNLVKIYKKGAKLAVNHLNLKFYEGQITSFLGHNGAGKTTTISVLTGLFPPT
SGTVYINGLDIRHDMDIIRRTLGVCPQHNVLFDILTVEEHVWFYGCLKGLSEAEVKAELD
TLLEDVGLLHKRHEQTKNLSGGMQRKLSVAIAFVGGSKVVVLDEPTAGVDPYSRRGIWDL
LLKYRKDRTIILSTHYMDEAELLGDRIAIISQGKLCCYGSPLFLKSRLGSGYYLTVVKRE
GLDTSTPSSTSICTNTSISTNKLPALKDSESSMSEDTGLGSEGSSSYLAALLSLAQHHIP
GARLVEESAREAVVNLPQTAAKDSSLGIFLSELDQRLTELGISSYGLSDSTLEEIFLRVA
EETGVDAEPDLQAGSPLRQQPSAGQMADRQHVEEPETEPQETDLLSGDGRGGIPLTGWWL
TWQQLRALFIKRWLYARRSRRGFFAQIVLPAVFVLVALLFSLVVPPFGKYPAMQLQPWMY
GEQYTFFSNDAPGNPAMENLLEALLDQPGFGTKCMEKEEEDNSTSPQCEGERGGPFMRPQ
VSFSTWQMFSKGNWSTDAPSPGCQCSTEDVRRMLPDCPQGAGGLPPPQIKRLTGDVLQNL
TSYNISDYLLKTYSQILKKSLKTKKWVNEFRYGGFSLGGSATQTLSQVHHVQDSIVAIRT
RYQVQQNSSLDHLLNRLPDFLGGLNSQNNVKVWYNNKGWHAMVSFVNVMNNGLLRASLPP
GPERRRHGITAYNHPLNLTKEQLTEMAMMATSVDVLVSICVIFAMSFVPASFVLFLIEER
VSKAKHLQFVSGVKPILYWLANFTWDMLNYTVPASMVVLIFICFQQQSYVSETNLPALVL
LLLLYGWSITPLMYPASFVFSVPSTAYVVLTSINLFIGINGSIATFVLELFVDEHLNEVN
RILKKVFLIFPHFCLGRGLIDMAKNQAMADAFQRLGTKQTLNPLQWDAIGKNLFAMAAEG
LIFFIFTILLQYKFFIRLRSWWAEPEMSPLGPEDEDVNRERERVKSGNAQSDILSMIDLS
KVYKSGRKPAVDRLCLGIPRGECFGLLGVNGAGKTSTFRMLTGDTAITCGEAFLNQHSVL
TEMERVHQLMGYCPQFDALSDLLTGREHLELYARLRGVPEESVTKVAQWGVKKLGLTQYA
EREAGGYSGGNKRKLSTAISLIGAPPVIFLDEPTTGMDPKAKRFLWNCILSVTKEGRAVV
LTSHSMEECEALCTRMAIMVNGRFQCLGSVQHLKNRFGDGYTIILRLMDTKSNLDSCPIS
THMKSSFPSIELKERHQSVLQYQLPSHACCLARVFDVLANNYEEMGIIDFSVSQTTLDQV
FVNFAKEQTDDDVLTDVVISNRTVQTNLTTLHSKINTPTIQPQTPITPPQPSNTPQQHDT
SCDSKPKEGKSKKPKAGTVKSKEGKANGEKSNSTAMTRMPRRGEKAQRRGRSDSSGSDCS
NDGVQGDSSKSSGSKHRAGSSSQNPSALFIVDSNTQDSAL
NT seq
7143 nt
NT seq
+upstream
nt +downstream
nt
atgggatttttacaacagctttcccttctgctctggaagaatatcacataccgcaggagg
aacaagatccagctgatcattgagctcctatggccgctcttcctcttcgtcatcctcatc
tctgttcgccattcacaccctccctacaaacagagccaatgtcactttccgaacaaagcc
ttgccatcagcaggcaccttgccctggatccagggcattatctgcaacatcaacaaccca
tgcttccacagcccgacaccaggggagacgctgggccaagtaggcaactttgacaactcc
atactgtctcgtctcttcatggacgcgcagactattctgtcctacagtggaaaccggaga
ttctctggctttcaggacctgatggagagtgtccaaaggctcggagagcgacctggagcc
tggccaaatctcccagtagaagaatacctgagagccaatgagacgttctccagtttcctc
ctgaccaatggcaacctgtcgtctgtgactgtgggccagctgctgaaggctcgtctcaat
tttcaggtttctgtggctggtgctcagatgcagctgaaggacttggtgtgtaatgcgagc
atgttgggacagtttctgaaggtggacgaaggagaagccaccatgaatgatcttcagact
cagctgtgtaacctgccagctgacgtcctgcagaaggctgaacgccttttcctctctcag
ctcgactttaccaagttcttcacgagagaacgtctgatggcgaacgctggagacctcagg
ctcattagtcaggccgtcacctcagtttcccaagagctggctgtcctcatcgatgatttc
tcctccctgtccagctttgcagacatgagcacagctcttcgttttctgtctccagaaaat
cgctcagctttgcccagagagagttttcgtgctttttcgaggatcatgtgcggtcaccct
gaggttggcggtgagcgcatcccatcactcaactggtatgaggacaatgacatcaagtct
ttcttaggaaaaaatgggactgaagacacagacccggaccgtgacaacaacacgactcct
ttctgtaaaagtttgatccacgggcttgagtccaaccctctgtctcgccttgtgtggaga
ggaataaaacctctgtttattgggaaactgctgtacacaccagacactcctgcagtacaa
caagtcatgaaagagatgaacaagactttcgaggacatgcagatcctccaggagctgaat
gcagcctggatggaggtgggaccacaaatcaagaattacatggagagcagcgtggagatt
cagctgctgcaggatttgctgagacggccagaggtcgcagtactggtcaacctgcgcctg
gagaacacatcctggacggcttcacgaattgcacgttttctggccacaccctcaccagat
gcccaaaggaagcccagcgcaccgcctacctggctggacatctacaacgacctcagccac
accatcaccacgctcgcacaagtcactgagtgtttctctctgaacaagctggaggggttg
gagaccgagggtcagatgattgacagggctttggagctactggaggacaggcagttttgg
gcgggtgtggttttcctgctgcccaactcctcgtcgcctgacctgccgccccacgtcacc
tacaaaatcagaatggacattgatgatgtgacccggaccaacaaaatcaaggacagattt
tgggatcctggtccagcagctgacccatttaatgatatgcgctacatttggggtggcttt
gtgtacgttcaggacctggtggagagagctgtgagccgcatgctgaccggagttcagcaa
acaaccggcatctacatccagcagatgccctacccctgctatgtagatgatgttttcctc
cgagtgctaaaccgctctctgccactcttcatgacactggcctggatctactcggtggct
atgatcatcaaaggcgtggtgtatgagaaggaggcgaggctgaaggaaaccatgaggatt
atgggtctgggaacgggaacactatggctcagctggtttatcaccagcattgttcctttc
ctcgtctctgcaggtctccttattgcactgctcaagtggggggacatcctgccatacagc
gacccatcggttgtgtttttcttcctgaccgcgttcgccaccgccaccatcatgcagtgt
tttctcatcagtacattcttctctaaagccaacctggctgctgcatgtggagggctgatc
tactttgggctttacctgccatacgtactatgtgtagcttggagagaccgcctcaacacc
acctacagagtcctcgctagtttcttgtctcctgtggcctttggcttcggctgtgagtat
ttctctcaatacgaagagcaaggcgtgggcatccagtggtacaacctccactccagccct
gtggaaggagactcgtacagctttactacctctattatcatgctttatctggacgccttc
atctatggtaccgcagcctggtacatcgaagcagtgtttcctggtgaatatgggatctcc
cggccctggtacttcatcttccagatcaactactggggtggagttcccctggaggcaggc
atgccgatcccccccgcacctgcagaacaggatgaagagcacattgaaccagaacccact
gacctgatcctgggtgtgagcgtcagaaacctggtgaaaatatacaagaagggagccaaa
ctagccgtgaatcacctcaatctgaagttctacgaggggcagatcacctctttcctcggc
cacaacggagccggcaaaaccaccaccatatctgtcctgactggcctgtttccaccgacc
tcgggcactgtgtacatcaatggtctggacatccgtcatgacatggacatcatccgcagg
actttgggagtttgtccacaacacaacgtcctgtttgacatactaacagtggaggagcat
gtctggttttatgggtgtctgaagggtttgtctgaagcagaggtgaaagctgagctggac
actctgctggaagatgttggccttctgcataaacgacatgaacagaccaaaaacctctct
ggtggcatgcagagaaagttgtctgtggcgatagcgtttgtcggaggctctaaggtggtt
gttctggatgaacccacagctggggttgatccatactcacgcagagggatttgggatcta
ctgctcaaatatcgcaaagaccggactatcatcctgtccacccactacatggatgaggca
gagctgctaggtgaccggatcgccatcatctcccaggggaagttgtgttgctatggctca
ccgctcttcctgaaatcccgccttggatctggctactacctcactgtggtaaagagggag
ggactggataccagcactcccagcagcaccagtatctgcacgaacactagcatcagcacc
aataaactgcctgctctcaaggacagtgagtcatccatgagtgaagacaccggcctggga
agtgaggggagtagctcataccttgcggcgttgctctccctggcacagcaccacatcccg
ggtgcgaggctggtggaggagtcggcgcgcgaggcggtggtcaacttgccgcagacggca
gccaaggacagcagcctgggcatcttcctctccgaactggatcagaggctgaccgagctg
ggcatcagcagctacggtctgtcagacagcacactggaagagatatttttgcgagtggcg
gaggaaaccggcgttgatgctgaaccagatctgcaggccggatctcccctcaggcagcag
ccatcagctgggcagatggctgacagacaacatgttgaagaaccagagacagaacctcag
gagacagacctgctgagtggagatggccgaggtgggatacccctgaccggctggtggctg
acctggcagcagctgagggctctcttcatcaaacgctggctctatgctcgaaggagccgc
aggggcttctttgctcagattgtcctgcctgctgtgttcgtactggtcgctctgctcttc
agcctcgttgtacctccatttgggaagtatcctgccatgcagctgcagccctggatgtac
ggagaacagtacacgttcttcagcaatgacgcacctgggaacccggccatggagaacctg
ctggaagctctgctggaccagccaggttttggtaccaagtgcatggagaaagaggaggaa
gacaacagcacgagtcctcagtgtgagggtgagcggggtggcccgttcatgcggccacag
gtctctttctccacctggcaaatgttcagcaaaggcaactggagcacagacgcaccgtct
cctggatgtcagtgtagcacagaggacgtacgccggatgctcccagactgtccgcagggt
gccggtggactgccgcctccgcagattaagaggctgactggagacgttctccaaaatctg
acaagttataacatctctgattacctgttgaaaacatactctcagattctcaagaaaagc
ctaaaaaccaagaagtgggtgaatgaattcagatatggaggtttctctctcgggggcagc
gccactcagactttatctcaagtccaccatgtccaagactcgatcgtggcgatcaggact
cgttatcaagttcagcagaacagttcgctggatcatcttctaaacagactgccggatttt
ctaggaggactgaacagtcaaaacaatgtcaaggtgtggtacaataacaaagggtggcat
gccatggtgtcatttgtcaacgtgatgaacaacggcctgctgagagcaagtctgccacca
ggtccagagaggagaagacacggcatcacagcctacaaccacccgctcaacctcaccaag
gaacaactcacagaaatggccatgatggccacatctgtagatgttctggtttccatctgc
gtgatctttgccatgtcctttgtgccggccagcttcgtcctttttctgattgaggagcga
gtcagcaaagccaaacaccttcagtttgtcagcggggtaaaaccgatcctttactggctg
gccaacttcacctgggacatgttgaactacacagtcccagcctccatggtggtgctgatc
ttcatctgtttccagcagcagtcgtacgtctcagagaccaacctgcctgccctcgtcctg
cttctcctgctctacgggtggtccatcacgcctctgatgtacccagcatcctttgtcttc
tcagtcccaagcacagcctatgtagtcttgacctccatcaacctcttcatcggaatcaac
ggcagcattgcaacttttgtcttggagctgtttgttgacgagcatctgaacgaggtgaac
aggatcctgaagaaggtgtttctcatcttccctcatttctgcctgggacgaggactcatc
gacatggccaaaaaccaggccatggcagatgctttccagagactgggcacgaagcaaaca
ctgaaccctcttcagtgggacgcgatagggaagaacctgtttgcaatggcagctgaaggt
cttatcttcttcatcttcaccatactgctacagtacaagttcttcattcgccttaggtcg
tggtgggccgagcctgagatgtctccgcttggtccagaggatgaggatgtcaacagggag
agagagagggtcaaaagtggcaacgcccaatcagacatcctctccatgatagacctgagc
aaggtttataaatcaggcaggaagccggcggtggatcgtctctgccttgggattcctcgt
ggagagtgttttggcctgctgggggtgaacggagcagggaagacctccacctttcgcatg
ctgaccggagacacggccatcacctgcggagaggctttccttaatcagcatagtgtgctg
acagagatggagcgagtccaccagctgatgggttactgtccacagtttgacgcactcagc
gacctgctgacgggtcgggaacatctggagctgtatgcccgcctgcggggagtgccagag
gagtctgtcaccaaggtggcgcagtggggcgtgaagaagctgggactgacccagtacgct
gagcgggaggctggaggctacagcggaggcaacaaaagaaaactctccactgccatctcc
ctcatcggggctcctcctgttatattcctggatgagcccaccactggcatggaccccaaa
gccaaaaggtttctgtggaactgcatcctcagcgtcaccaaggaaggaagagctgtggtt
ctcacctcccacagtatggaggaatgtgaggcgctctgcacgagaatggccatcatggtg
aacggcagattccagtgtctcggatctgtacaacacctgaagaacaggtttggtgacggc
tacacgatcatcctccgcctgatggacactaaatccaacctggactcgtgccccatcagc
actcatatgaagagctcttttcccagcatcgagctgaaggagcgccaccagagcgtgctg
cagtaccagctgccctcacacgcctgctgcctagctcgtgtctttgatgtgctggccaac
aactacgaggagatgggcatcattgacttctctgtttcacagaccacgctggaccaggta
tttgtcaactttgccaaagagcagacggatgacgacgtcctcacagatgtggtcatcagc
aacagaacagtgcagaccaacctcacgacgctgcactccaagattaacactcccaccatc
caaccacagacgccaatcacaccccctcaaccaagcaatactccacagcaacatgacaca
tcatgtgacagcaaaccaaaagagggtaaatcaaaaaagccaaaagctggcacggtcaaa
tctaaagaaggcaaagctaacggagagaaaagcaacagcacggcaatgaccagaatgcct
cggcgaggggagaaggctcagaggagaggccgcagtgacagcagtggatcagactgcagt
aacgatggagttcagggagattccagtaaatccagtggctccaaacacagagcagggagc
tccagtcaaaatccttcagcactctttatagtcgacagcaacacacaggacagtgcacta
tga
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integrated database retrieval system
