Cyclopterus lumpus (lumpfish): 117732139
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Entry
117732139 CDS
T09199
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117732139 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117732139 (cnot1)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117732139 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117732139 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
117732139
NCBI-ProteinID:
XP_034390749
Ensembl:
ENSCLMG00005004164
LinkDB
All DBs
Position
6:complement(20935636..20957966)
Genome browser
AA seq
2393 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFIATLCYAVDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNADLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LQLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHAGFIIRDSKGLHIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVFS
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQMDSLSGMGSL
NLGGTAPSHTQSMQGFPTSLSSAFSNPQSPAKAFPPLSNPNPSTPFGGIGSLSSQLPGMD
SGPLGTGIGSSIGSSLGMTTVNTDPFGTRKMSTPGLNPPTFQQSKIEASDLSQVWPEANQ
NFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEE
YRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAAL
DRFKNRLKDYPQYCQHLASIAHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPGSL
ALAQVQAQSQQPGVPKAPQPGQPSTLVTTTTSTTTVAKTPTITRPTPSSFKKDVPPSINT
TNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQ
YLVMKRVSIEPNFHGLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLL
KNLGHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVF
RPQNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKDKLKSL
EEQLSAPKKETKPPEEMLPVSTTGDFVPFAAPPSTPAATTTACTTTGPPTPQFSYHDINV
YALAGLAPHININVNISLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQII
RKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQ
REMMEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPV
VLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAW
ATDDVAQIYDKCMADLEQHLHAIPPALAMNPLTQALRSLLEAVALARNSRDGIAALGLLQ
KAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKY
NVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEAD
LFHTIETLMRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYD
DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCT
EMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLL
NKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTF
HILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVE
LNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLP
DPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVS
NEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGR
YLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLL
ITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7182 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctttcgctggctttgtctcaaatcagctatctggtggacaattta
acaaagaaaaactaccgagccagccaacaagaaatacagcatattgtaaatcgtcacggc
cctgaggcagacaggcatttactacgctgtctcttctctcatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttctgatccaggagtgtgtgtcg
ctgatatcaaagccaaactttatcgctactctgtgttacgccgttgacaatcccctgcac
taccagaagagtttgaagccatcggcccatttattcactcaactgagtaaagttcttaag
ctcagcaaggtccaagaggtgatttttggacttgctttgctcaactccagcaacgcagac
cttcgtggttttgctgcgcagttcatcaagcagaaacttccggacctcctgcggtcatac
gttgacgcagatctcggaggtaaccaggaaggtggcttccaagacattgccatcgaggtc
ttgcagttactgctctcccatctactctttggccagaagggagccagcggggtagggcaa
gagcagattgacgccttcctcaagacactttgcagagatttcccccaggagcgctgccct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattctcatggacaggatcctg
ccagactcgggagagttagctaagaccatgatggagagttctctagcagaattcatgcaa
gaagttggctatggcttctgtgctagtctggatgagtgcagaaacataatcctccagtat
ggggtgagagaggtgactgctagccaggtagccagggtcctgggcatgatggctcgtacc
cactctggcctaactgatggcattccactacagtccatctccgctccaggaagtggtatc
tggagcgacggtaaggacaagaacgatggctcgcaggcacacacgtggaatgtcgaggtc
ctcatcgacgtcgtgaaagaagtgaatcccaacctgaacttcaaagaggtgacatacgaa
ctggaccatgccggctttataatccgggacagtaaaggcctgcatatagttgtgtatggc
atccagagggggttgggcatggaggtcttccccgtcgatctcatctatcggccatggaaa
cacgctgagggacagctgtcattcattcagcactccctgatgagcccagaagtgttctcc
tttgctgactacccttgccacactgtggccattgacatcctgaaggccccaccagaggat
gacaacagggagattgccacctggaaaagtctggatctggtggagagcctgcttcggctc
tctgaggtgggacagtatgagcaggtgaagcagctgttcagctttccaatcaagcattgt
ccagacatgttggtgctggcgttgctgcagatctccacctcctggcacacactgcgccat
gagctcatctctaccctaatgcccatctttctgggtaaccaccctaactctgccatcatc
ctgcactacgcctggcatggacagggacagtctccctccatccgtcagctgattatgcat
tcaatggctgaatggtacatgagaggagagcagtatgaccaggccaagctgtctcgcatc
ctcgatgtggcccaagacttaaagtcactatcgatgttgctgaatggaactccatttgct
tttgttattgacctcgctgcacttgcctctcgccgtgaatacctcaaacttgataaatgg
ctgactgacaaaattagagaacatggagaacctttcatccaggcgtgcgtgacattcctg
aagaggcgttgcccgtccattatggggggtctggcccccgacaaggaccagcccaaaagt
gctcagctgcccccggagaccttagccaccatgctagcttgcctgcagtcctgtgctggg
agcgtgtcccaggagctgtcagagactatcctgaccatggttgccaactgcagcaatgta
atgaataaagcccgacaaccaccaccaggggtaatgccaaagggacgtgcccccagcacc
agcagcctggatgccatctctcctgtacagatggactccctgtccggcatgggttccttg
aaccttgggggcactgccccctcccacactcaaagcatgcagggtttcccaacctcactg
agttcagcgttcagtaatccccagtccccagcaaaggcctttccaccactctccaaccca
aaccccagcacaccatttgggggcattggcagcctgtcctcccagctccctggtatggac
tctggtcccttgggcacaggcatcggctctagtattggctctagtctagggatgacaact
gtcaacacagacccttttggcaccaggaagatgagcacaccaggcctgaacccacccacc
tttcaacagagtaagattgaggcttctgatctttctcaggtgtggcccgaggcaaaccag
aactttagtaaggagatagacgatgaggcaaacagttacttccagcgcatctacaaccac
ccacctcacccaactatgtctgtggatgaagtactggagatgctgcagaggttcaaggat
tcaaccatcaagcgggagcgcgaggtgttcaattgcatgctgcggaacttgtttgaggaa
taccgattcttcccccaatacccagacaaggagctgcatatcactgcctgcctttttggt
ggcattatcgagaagggtcttgtcacctacatggccctgggcctggccctccgatatgtt
cttgaagccttaagaaaaccctatggatccaaaatgtattactttggaattgctgcccta
gataggtttaaaaacagactaaaggactatcctcaatattgtcaacacctggcttcaatt
gcccacttcttgcaattcccccaccatttacaagagtgcgtgcagtatattgagtatggc
caacagtcacgggaccctccggtgaagatgcaaggctccatcaccacccctggcagtctg
gcactggcacaagtccaagcccagtcgcagcaacctggtgtccccaaggctccacagcca
ggtcagccaagcactctagtcaccaccacgacgagtacaaccacagtagccaagacccca
accatcacaagaccaacacccagcagcttcaagaaggatgtgcctccctccataaacaca
accaacattgacacactgctggtggccactgaccaaacagaaaggattgtcgagcctccg
gaaaatgtccaagagaagattgctttcatcttcaacaacctttcccagtccaacatgacg
cagaaggttgaggagttgaaagagactgtgaaggaagagtttatgccctgggtgtctcag
tacctggtgatgaagcgcgtcagcattgagcccaactttcacggcctctactccaacttc
ctggacactctcaagaaccctgagtttgtgaagatggtactcaatgagacttacaggaat
atcaaggttctgttgacctctgacaaggcagctgccaatttctctgatcgctccctgctg
aagaacttgggccactggttgggcatgattacactggctaaaaacaagcctatcctctac
acagatctggaagtcaagtctctgctactggaagcctacgtgaaaggccagcaggagcta
ctgtatgtagttccctttgtggccaaagttttggagtccagtctacgaagcatggtcttc
aggccccagaacccctggaccatggccatcatgaatgtcctcgctgagctgcatcaagaa
catgatctcaagctcaacttaaagtttgagatagaagttctgtgtaagaacttgtctttg
gacatcaatgacctcaagccagggaacttgctgaaagacaaagataaacttaagagtttg
gaggagcagctgtctgcaccaaagaaagagacaaagcctccagaggagatgctgccagtt
tctaccacaggagactttgttccatttgcagcccctccctcaaccccagctgcaaccacc
accgcttgcacaaccactgggccccccacccctcagttcagttaccacgacatcaatgtg
tatgccttggccggccttgctccacacatcaatataaacgtcaacatctcgctgctacag
gctcatccccagttgaagcagtgtgttcggcagtcggtagagcgagcggttcaggagctg
gtgcaccccgtggttgaccgctctatcaaaatagccatgacaacctgtgagcagatcatc
aggaaggactttgccctggattcggaggagtcccgtatgcgcgtggctgcccaccatatg
atgagaaacctgaccgctggcatggccatgattacctgccgcgagcccctgctcatgagc
atcgccaccaaccttaagaacagctttgctgctgcacttcgggcaccaacaccccaacag
agggagatgatggaagaggctgcagccaggattgctcaagacaactgtgaactggcttgc
tgcttcattcagaaaacagctgtggagaaggctggccctgaaatggacaagagactagcc
acggagtttgagttgaggaagcatgcccgccaagagggacgtcgctattgtgatcctgtt
gttctgacttaccaggctgaacgtatgcctgagcagatcagactcaaggtgggaggagtg
gacccaaaacaactggctgtgtatgaggagtttgccaggaatgttccaggtttcttaccc
agcaatgatctctctcaacccactggcttcttggctcagcccatgaagcaacaggcatgg
gccacagatgacgtggctcagatctacgataagtgcatggcagacctggagcaacatctt
catgctatccctccagcccttgccatgaaccccttgacccaggctctgcgcagcctgctt
gaagcagtggccttggcgaggaactccagggacggcatcgccgcacttggccttctgcag
aaggctgtggaaggtcttctggatgccactagtggtgctgatgccgacttgctgctccgc
tacagggagtgccacctgctggtgctcaaagcccttcaggatggacgtgcctatggacca
cagtggtgcaataagcagataaccaggtgtctgattgaatgtcgtgatgagtacaaatac
aacgtagaggcagtggagcttctgatcagaaaccacctggtcaacatgcagcagtatgac
ctgcacctggcgcagtcgatggaaaatggactgcactacatggcagtcgcttttgccatg
cagctggtgaagctcctgctggtggatgaacgcagtgtcagccatgtcacagaggccgac
ctcttccacacaattgagactttaatgagaacctgtgcacactccagagccaacgcacct
gagggccttccccagctgatggatgttgttcgctccaactatgaggccatgattgaccgg
gcccacggcggacccaacttcatgatgcactctgggatttcacaggcgtcagaatatgac
gatcctccaggccttcgggagaaggctgagtacctcctgagggaatgggttaacctgtat
cactcggcagctgccggcagggatagcaccaaagctttctctgcctttgtaggccagatg
caccagcagggcatcctgaagacggatgacctgatcacaaggttcttccggttgtgcaca
gaaatgtgtgtcgagataagctatagggcgcaggctgagcagcagcacaacccagcagcc
agtgcagccatcatcagggccaagtgttaccacaacctggatgcctttgttcggctcata
gccctgctggtcaaacactctggagaggccaccaacacagtgacaaaaatcaacctcctc
aacaaggtgctgggtatcgtagttggggtgctgattcaggaccatgatgtccgtcagaca
gaattccaacagctgccataccaccgcatcttcatcatgctgctgttggagctcaacgct
cccgaacatgttctggagaccatcaactttcagacactcaccgccttctgcaataccttc
cacatcctgagacccaccaaagctcccggctttgtgtacgcctggctggaactcatctcc
catcgcatcttcatcgccaggatgctagctcacactccgcagcagaagggttggcccatg
tacgcacagctgctgatcgatctcttcaagtacctggccccattcctgaggaatgtagag
ctcaacaaacctatgcaaatcctctacaagggcacactgcgagtgctcctcgtcctgctg
catgacttcccagagttcctctgtgactaccattacggcttctgtgacgttatcccgccc
aactgcatccagctccgcaaccttatcctcagtgcctttccacgcaatatgaggctccct
gaccctttcacacccaatctcaaggtggacatgctgagtgagatcaacattgcgccccgt
atcctcaccaacttcacaggcgtgatgccttcccagttcaaaaaggacctggactcctat
ctgaagactcgttcaccagtcaccttcttgtctgagctgcgcagcaacctgcaggtgtct
aacgagccagggaatcgctacaacatccagctgatcaacgctctagtgttgtatgtaggc
acacaggcaatcgcccacatccacaacaagggcagcaccccctccatgagcacgataaca
cactctgctcacatggacatcttccagaatctggccgtggacctggacactgaggggcgt
tacctgttcctgaatgcgatcgccaatcagctgcgctaccccaacagccacactcactac
ttcagctgcaccatgctctatctgtttgccgaggccaacaccgaggccatccaggagcag
atcaccagggttctgttggagaggctgatagtgaacaggcctcacccgtggggtctcctc
atcaccttcatcgagctgatcaagaatcctgccttcaagttctggagccacgactttgtg
cactgtgctcccgagatcgagaagctgttccagtcggtggcccagtgctgcatgggacag
aagcaggcccagcaggtgatggagggcaccggtgccagctag
DBGET
integrated database retrieval system
