Cyclopterus lumpus (lumpfish): 117735942
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Entry
117735942 CDS
T09199
Symbol
ttc37
Name
(RefSeq) tetratricopeptide repeat protein 37 isoform X1
KO
K12600
superkiller protein 3
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117735942 (ttc37)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117735942 (ttc37)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
117735942 (ttc37)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_16
TPR_14
TPR_19
TPR_11
TPR_8
TPR_17
TPR_9
TPR_12
TPR_CcmH_CycH
ANAPC3
ANAPC8
TPR_7
ARM_TT21_C
Hemopexin
YceG_bac
HEAT_Nup120
TPR_Slam
Motif
Other DBs
NCBI-GeneID:
117735942
NCBI-ProteinID:
XP_034396764
Ensembl:
ENSCLMG00005021316
LinkDB
All DBs
Position
9:complement(15466161..15481013)
Genome browser
AA seq
1568 aa
AA seq
DB search
MSNKEVKAALKSAREAIKNKEFKDALKHCKAVLKLEKNNYNAWVFIGLAASELEHTDQAQ
TAYKKAVELEPEQLLAWQGLANLYEKTDQWDFKIELPNIYQRLVELYASSDKNKCYEIIS
KLSDIYQSDKEYLKLAKVWLQLIQVKEEEAVDKNELLQLLQQMTQLLSDCLNEEERDNET
QQHLITAFEKAMVLMDPVPGEQHKKFSADYVKCLSKLPKDEPKMIVACESMLSLYPNQSY
PLEVLCSHYLKTGVQNEGAVSCFSRLLDLAPNSGLGHLGLGTKALQEGRFKDAIQDLTQG
LKRLSSSTGWCSLAEAQFKMQRYSDCAMSCSQGLTVCVSGDKELRVKLLKLQLEALVGSG
GDTAAEQALETFSQIPDAEKDPVLGALKGRAYLNKGQVDEALKVSSELVASNPNLAQGFV
LRGMAQLALGQQQLAEESFLKAASQSPDCGEYYFFLGRLYWDMGEETRKDRSKAHTHLLK
AAKLDPHLGCVFRYLGHYYRQVANDHSRSRGCYKKAFEMDNTDAESGAASVDLSMEQDDM
DTALAILQSVIEKATPGSAKWAWMRRGLYYLKIGEYQQAVADLQAALRADPEDWVCWECL
GEAYLNRRSFTAALKAFGKAHQLQPSSIYSVYQAAAIKQTLGKFREAVAEYLQITAQQDY
VPALKGLGECQLSLAKCLMEDCRDKGAIELIQQAIQNLFRAVEMRPDMSCLWKLLGDACT
AVGTVTPNSVQVLVPAPLAGLDPNTQSHTLNQAQTLKVGERCYARALKLMPEVPSLWNDL
GLNYYRQSSLSSFTEDNLTSPSLLLEKAQQCLKKAIMMDSDNHSYWNALGVISMSKGLEN
FALAQHCFIKSIQVEPNNVVAWTNLGTLYLKNGNIELAHKAFKIAQSLEPLYVNCWIGQA
LIAERVGSYDTMDLFRHTTELSTHMEGVKGYAYWVCSTLLDKSNRDSELYRYNIVQMNAI
SAAQVALSKYTERIQSDPDAFIMLGFLNEHLQLKRQALKAYKRAVDLLKSMSSTEELAFA
LGSYGRALCTFGQSEEAVRVYNSTPLQELSDLAGLALAYCRAGLIPESIKAYERALAVAY
TEKEKAYILTALALLQHRQGNLDSAKTLLFKCSMLKEPISESLLCLCALGLVHSDATLAA
AALTELLKQGSASVNVTEQQCLLTCALLALQGNYSAVQREASRAVHSNPGNPSLWALLSR
LVPQYYPKKANGGAMAGHVACLSSMTQGKRALLYSGVNQLASGRHSGEDSHRNALKTMQR
AVLLCPDDPATWAGLMAACHTENTSCYLSGAAPSRQGLEQTLMSVVSEKVHNVEEIERPL
AQALEGWVLKQAVTGLMLGGQLEQAEALCSQVLNVSPEHPAVMLSLRQVQCQRLLLAGRG
TVLPDSVLEQLHNTVMLNPTNLGAWHWLAEVFRSQGLLVQAVMAYRQSLQLASQLGLHSS
QVASLLRLALLALGNCMAGVPGNEWTDMIIEATTEVLKLGSSPMALLFQALLHYVTKMAA
RETRRLLERLAYAQDYPVTVAQVSSWYLLRHLHAKNDQELINVLLQHAKMKGDKRLLEFH
SLLASSSS
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgtctaataaagaagtgaaagcggcactgaaaagtgccagagaggctataaaaaacaaa
gagttcaaagacgctctgaaacactgcaaggctgttttgaaacttgagaagaacaattac
aatgcgtgggtattcatcggcttggcagccagtgaactggagcatacagatcaggcacag
actgcctataaaaaagccgtggagctggagcctgagcagctgctggcatggcagggtttg
gcaaatctttatgagaagaccgatcagtgggattttaaaattgagctacccaacatctac
cagaggcttgttgagctgtacgcaagctcggacaaaaataaatgttatgagatcatcagt
aagctgtcagatatctatcagtctgacaaagaatatttaaagttggcaaaggtttggctg
cagctcattcaggtgaaggaggaagaggctgtggacaagaacgagttactgcagctattg
caacagatgacccaactcctctcagactgccttaatgaggaagagcgggacaatgaaact
caacagcatttaatcacagcatttgagaaggccatggttctcatggatcctgtaccagga
gagcaacacaagaagttctcagctgattatgtcaaatgtctttctaaactgcctaaagat
gaacccaaaatgatagtggcatgtgagtccatgctgtccctctaccccaaccaaagctat
cctcttgaagtcctttgttctcactacctcaaaacaggtgttcagaatgagggtgcagtc
agctgtttctcccgactccttgatctggcccctaacagcggattaggtcacttgggtctg
ggcaccaaagccctgcaagaagggaggtttaaagatgccattcaggaccttacacaaggt
ttgaagagattgagttccagtacaggatggtgcagtctggctgaagctcagtttaaaatg
cagagatactcagactgtgctatgtcatgctcccaaggtctgactgtatgtgtgtccgga
gacaaggagctgagggtcaaactgctgaagctgcagctagaggctttagtagggagtggg
ggagacacggctgcagaacaggctttggagacattctcacagatcccagatgctgaaaaa
gacccagttttaggagcccttaaaggacgagcataccttaacaagggacaagttgatgaa
gcacttaaggtgtcgtcagagctggtggcctctaaccctaatctggcccaggggtttgtt
ctgagaggaatggcacaattggctctgggccagcagcagctggcagaggagagtttccta
aaggcggctagccagagcccagactgtggagagtattatttctttctgggacgactctac
tgggacatgggagaagagacccgaaaagacagaagcaaagcccatacacatttgctcaag
gctgcaaagttggacccacaccttggttgtgtattccgctaccttggacattactaccgc
caggtggcaaatgatcacagccgctcacgaggatgctataagaaggcttttgagatggac
aacactgatgctgagtctggagctgcctcagtggatctcagtatggagcaggatgacatg
gacactgcattagcaatacttcagtcagtgattgagaaagccacaccgggctcggctaaa
tgggcttggatgaggcgggggctgtactacctaaagatcggagagtatcaacaagctgta
gctgatctgcaggcagccctgagagcagatccagaggactgggtgtgttgggagtgttta
ggtgaggcctacttaaaccgccggagtttcacagccgccctgaaggcctttggtaaggcc
caccagcttcaaccctcctccatttacagtgtctaccaggctgctgctatcaaacagacc
ctgggcaagttcagagaggctgttgcagagtacttgcagatcacagcgcagcaggactat
gtgcctgcccttaaaggtcttggggagtgccagctgtctctggcaaaatgtttaatggaa
gactgcagagataaaggagccattgaacttattcaacaagccatacagaacctcttccga
gctgtggagatgcgtccagacatgtcctgtttgtggaagctgctgggagatgcttgcacc
gcagtcggcactgtgactccaaacagtgttcaagttttagtgccagccccactggctggt
ttagaccccaacacccagagccacacactgaaccaggcccagacactcaaagttggtgag
aggtgttacgctcgcgctttgaagctgatgcctgaggttcccagcctttggaatgaccta
ggactcaactattatcgtcagtccagcctatccagcttcacagaggacaacctgacctct
ccatcgctgctcctggagaaagcccagcagtgtttaaaaaaagctatcatgatggacagt
gacaaccatagctactggaatgccctcggagtgatttccatgagcaaaggtctagagaac
tttgctctggctcaacattgcttcatcaagtccatacaggtcgaaccaaacaatgttgtt
gcttggaccaaccttggtaccctgtatttgaagaacggcaatatcgagcttgcacacaaa
gccttcaagattgcccagtcgctggagccgctctatgtcaactgctggattggacaggcg
ctgatagcagagagagtgggaagctatgacaccatggatcttttcaggcacaccactgaa
ctcagcacacatatggagggagtgaaaggttatgcctactgggtatgttccaccctgctg
gataagagtaacagagactctgaactgtaccgctacaacatagtccagatgaacgccatc
tctgctgctcaggtggcactcagcaagtacacagagaggatccagtctgaccctgatgca
ttcattatgcttggtttcctaaatgagcatctgcagctgaagaggcaggccttaaaggct
tacaaaagagctgttgacctgcttaaatccatgtcctcgaccgaagagctggcctttgct
ctgggcagctatggacgtgctttgtgcaccttcggccagtcagaggaggcagtgcgtgtt
tataactccactccactgcaggagctcagtgatctggctgggttggctcttgcctactgc
agggcaggactcatcccagagagcattaaggcctatgaacgtgccttggcagtggcttac
actgagaaggagaaggcttacatcttgacagctcttgctctgcttcagcaccggcagggt
aacctagactcagccaagactctgctgtttaaatgctcaatgttaaaggagccgatctca
gagtccctgctgtgtttatgtgccctggggttggtccacagtgacgctacactagctgct
gctgccctgactgagttgctaaagcaaggttcagcctctgtgaatgttacagagcagcaa
tgtctcctcacctgcgccttgctcgccctgcagggcaactacagcgcggtgcaaagagag
gcttccagagctgtacacagcaatcctggaaacccatctctatgggccctgctgtcaaga
ctggtaccacagtactaccccaagaaggccaatggcggtgcgatggctggtcatgtggcc
tgtctctccagtatgacccaaggaaagagggcgttgttatacagtggggtgaaccagctg
gctagtgggagacactctggagaggacagtcacagaaatgcactgaagacaatgcagaga
gctgtgctgctctgtcctgatgatccagcaacatgggcaggattaatggctgcctgccac
acagaaaatacttcctgttatctttcaggtgctgctcctagcagacaaggactggagcaa
acactcatgtcagtggtttctgagaaagtgcataacgtggaggagatagagcgccccctg
gcccaggctctagaaggctgggtactaaaacaggcagtgactggtctcatgttgggggga
cagctggagcaggctgaagccctctgctcacaggtactgaatgtttctccggagcacccg
gcagtgatgctgtcactgagacaggtgcagtgtcagcgcctcttactggccgggcggggt
actgtgctcccagactctgtcctggagcaactccacaacacagtgatgctgaaccccacc
aaccttggggcgtggcattggctggctgaggtgtttcgtagccagggcctgctggttcag
gcagtcatggcttacaggcagagtctgcagctagcctcacagctcggcctgcacagcagc
caggtcgccagcctgctacgactagcgttgctagctctcggaaactgtatggcaggtgtc
ccaggaaatgaatggacggacatgataatagaagccaccactgaggtcttgaagctgggt
tcatctcccatggccctcctcttccaggccctgctccactatgtgacgaagatggctgcc
agggaaacaaggcgtttgttggagaggctggcttacgctcaagattacccagtgacggtg
gcgcaagtgtccagctggtacctcctcagacacctgcatgcgaaaaacgaccaggaacta
ataaatgtccttctgcagcatgccaaaatgaagggagataaaagactgctggagtttcat
tcactgcttgcctcttcttcatcctga
DBGET
integrated database retrieval system
