Cyclopterus lumpus (lumpfish): 117739253
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Entry
117739253 CDS
T09199
Symbol
col9a2
Name
(RefSeq) collagen alpha-2(IX) chain
KO
K08131
collagen type IX alpha
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04510
Focal adhesion
clum04512
ECM-receptor interaction
clum04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117739253 (col9a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117739253 (col9a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117739253 (col9a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
clum00535
]
117739253 (col9a2)
Proteoglycans [BR:
clum00535
]
Extracellular matrix (ECM) proteoglycans
Others
117739253 (col9a2)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
117739253
NCBI-ProteinID:
XP_034401442
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Position
11:complement(14131170..14146997)
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AA seq
691 aa
AA seq
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MAALSALLKTLVILQTVCLALAQVRGPPGPQGQAGSPGPSGTPGSDGIDGDTGPPGPPGA
PGLKGEPGEPGPDGVAGENGIDGLIGAKGDRGPFGSPGPKGKPGPSGELGLPGPGLPGLA
GAPGPIGLPGEIGSPGPKGILGSLGPPGLPGPPGKPGPPGKFIGGEEGSADFQCPLNCPA
GPKGPQGLQGVKGHKGRGGVLGEPGSIGKSGPKGEVGISGEQGIPGPSGPMGLRGYPGMM
GPKGEAGPRGYKGINGPVGIPGPPGEEGPQGPPGEAGDKGDKGGRGIQGPQGAVGKKGEN
GLPGIDGKDGTPGIPGIKGSPGKDGMPGPPGPQGAAGLPGSPGSKGGSGFKGEPGPRGHI
GMSGSPGPLGEPGLPGEAGMEGVPGPKGDRGQRGAVGPQGVVGKAGNKGERGPIGVPGAQ
GLSGTKGDKGFQGKVGSKGDNGDPGVEGLAGEKGDKGLSGEPGPKGQQGIRGDSGHNGPT
GDPGKPGDQGPLGLPGPRGLNGERGVPGMPGIQGPSGRDTSDQHIIEVVLKMLQERLAAV
AVSAKRAVLGGAGVMGPPGPPGPPGSSGPQGPHGLPGARGLPGMFGGHGQIGNTGLKGKR
GAKGDRGDPGKPHPGLPGPPGIQGPAGVDGVARDGRHGERGPQGSTGQAGYPGKAGSTGL
PGFCEAAMCLAASAYTSPRLQEAGRIKGPNV
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggctgctctctctgccttgctgaagaccctggtaatactgcagaccgtgtgcctggct
ctggcccaagtgaggggtccacctggacctcagggccaggccggctcaccaggcccctct
ggcactcctgggtcagacggcatcgatggagacacaggaccacctgggccccctggtgca
ccaggactaaaaggagagccaggagagcctggtcctgatggagtagcaggagagaacggc
attgatggtttgattggagcaaagggggatcgaggtccctttgggagcccggggcctaag
ggtaaacctggaccaagtggtgaacttggacttcctggacccggtcttccaggactggct
ggcgctccagggccaattggccttccaggtgaaattggatcacctggtccaaagggtatc
ctaggatcacttggacctccaggacttcccggacctcctggcaaaccaggtcccccaggg
aagttcattggtggagaagagggaagtgcagacttccagtgtcctcttaactgtccagca
ggacctaaaggcccccagggactgcagggagtcaagggacacaaaggacgtggtggtgtt
ctcggagagcctggcagcataggaaaatcgggtcccaagggagaagtgggcatctctggg
gagcagggcatcccaggaccttcgggtccgatgggcctaagaggttatccaggaatgatg
ggtcctaaaggggaagcagggcctcgtggttacaagggcatcaacggtcctgtaggaata
cctgggcctcctggtgaggaggggcctcagggtccacccggagaggcaggagacaaggga
gacaaaggcggccgaggtatccagggcccacagggtgcggttggcaagaagggagagaat
ggtctgccgggtattgatggaaaagatggcacacctggtattccagggatcaagggcagc
cctggcaaagatgggatgcctggtcctcctggtcctcagggagcagcgggattgcctggc
agcccagggtcaaaaggtggatctggatttaagggagagcctggtcctcggggtcacatt
ggcatgtctggttcccccggacctctgggtgaacctggtcttcccggtgaggctggtatg
gaaggagttcctggacccaagggtgacagaggtcagcgaggagcagttgggccacaggga
gttgtcggcaaggctggaaacaaaggagagcgaggaccaatcggtgttccaggtgcccaa
ggtcttagcggaaccaagggagacaagggcttccaaggaaaagttgggtcgaagggagac
aatggcgaccccggtgttgagggattggctggcgagaaaggtgacaagggtttgtccggt
gaacccgggcctaaaggacagcaaggaattaggggcgactccggacacaatggacccact
ggagaccctggtaaacctggagaccagggaccactgggactgcccggtcctaggggactc
aatggagagcgaggagtacctggcatgccaggcattcagggaccatccggacgcgataca
tctgatcagcacattatcgaagtggtgttaaagatgttgcaggagaggctagctgctgtg
gcagtgagcgccaagagggccgtgcttggtggagcaggtgtaatgggacctcctggaccc
cctggacccccggggtcatctggccctcaggggccacatggcttacctggtgcccgtggc
cttcctggcatgtttggaggacatggacagattggaaacactggacttaaaggaaagaga
ggggcaaagggagacagaggagatcctggtaaaccccatccaggactaccaggaccccca
ggaatacaaggtcctgcgggtgttgatggtgtggctcgggacgggaggcatggcgagaga
gggcctcaggggtcgaccggacaggcgggttaccccggtaaggcgggttcgacaggtctc
cccggcttttgcgaggctgcaatgtgtttagctgcgtcggcatacacatccccgagacta
caggaagcgggaagaatcaaaggacccaatgtttag
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