Cyclopterus lumpus (lumpfish): 117740960
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Entry
117740960 CDS
T09199
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b
KO
K04834
voltage-gated sodium channel type II alpha
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
clum04040
]
117740960 (scn1lab)
Ion channels [BR:
clum04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
117740960 (scn1lab)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
ATP-synt_B
GPHH
Spem1
New_glue
Motif
Other DBs
NCBI-GeneID:
117740960
NCBI-ProteinID:
XP_034403541
LinkDB
All DBs
Position
2:6124687..6169259
Genome browser
AA seq
2023 aa
AA seq
DB search
MAQLLVPPGPDSFCPFGPESLAAIERRIAEEEARRPRAERRIDIDDENGPRPNSDLEAGK
SLPFIYGDIPPRLVSTPLEDLDTFYSNQKTFIVLNRGKAIFRFNATPALYILSPFNPLRR
VAIRVLVHSMFSMLIMFTILTNCAFMTLSNPPEWAKNVEYTFTGIYTFESLIKILARGFC
VGKFTFLRDPWNWLDFSVILMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRLPFAGNSTNSSSNGTAGDDD
AALFGGILLDINTTFAQNATESPFNWTEYISDERNYYFLPGRRDALLCGNGSGAGLCPEG
YTCIKAGRNPDYDYTSFDSFSWAFLSLFRLMTQDYWENLYQQTLRAAGKPYMIFFVLVIF
LGSFYLVNLILAVVAMAYDEQNQATIEEAQQKEEEFQAMLEQLKRQQEEAQVAAAAATES
GEYSGRGGPTSESSSGTSKLSSKSAKERRNRRKKRKQREEEERGGRDKFHKSESEDSIKR
TSFRFSIDANRLSYEKRCSSPNQSLLSIRGSLFSPRRNSRASLFNFRGRARDMGSENDFA
DDEHSTFEESDSRRGSLFLPRRLERRCSAVSQTSLGAPRIMLPANGKMHCAVDCNGVVSL
VGGTSVTTSPVGLLLPEGTTTDTELKKRWPGFRKPSMDYLDEPVGRQRAMSVASILTNTM
EELEESRQKCPPCWYRFANTSLIWDCCPAWLKIKDIVSTVVMDPFVDLAITICIVLNTLF
MAMEHYPMTKEFNSVLSVGNLVFTGIFTAEMCFKIIALDPYYYFQEGWNIFDGIIVSLSL
MELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIF
AVVGMQLFGKSYKECVCKISDDCQLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAG
QTMCLIVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDSEMNNLQIAVGRIQRGIT
FIKSTVRQFLQSLCFGGGGGGKGSGLAEESKPLDELHSNGKGNCISNHTTVEPSVVYVTE
GNGRPGGGLVVGVGVGEDTTGKYPMEECDYMSFIHNPSLTVTVPIAVGESDFENQNTEDF
SSDSSDVEDSKEKLDVEPQRLSSSEGSTVDIRPPGDGEDSVEMEPEESLEPEACFTEGCV
SRFQCCQINEEYEHFKHWWTLRKTCFIIVEHNWFESFIIFMILLSSGALAFEDVYIEQRR
TIKTVLEFADKVFTYIFILEMLLKWVAYGFVKYFTNAWCWLDFLIVDVSLVSLVANAMGY
SELTTIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGV
NLFAGKYYYCVNTTTDVIFPIDVVNNKTDCLNLVNDSARWKNVKINFDNVGAGYLALLQV
ATFKGWMDIMYAAVDSRDVEDQPEYEVNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQ
QKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPTNVFQGCVFDCITKQAFDIVIM
ILICLNMVTMMVETDDQTPDMDRILYWINLVFIVLFTAECMLKMISLRHYYFTIGWNIFD
FVVVILSIVGMFLSKVFEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLP
ALFNIGLLLFLVMFIYAIFGMSNFAYVKREAGIDDMFNFETFGNSMICLFQITTSAGWDS
LLAPILNKREPDCDSQMEHPGNSYKGNCGNPSVAIFFFVSYIIICFLIVVNMYIAVILEN
FSVATEESGEPLSEDDFEMFYEVWERFDPDATQFMEYSKLSDFADALDPPLRISKPNMIQ
LISMDLPMVSGERIHCLDILFAFTKRVLGESGEMDVLRGQMEERFMASNPSKVSYEPITT
TLRRKQEDIAAMIIQRTFRRYMICLAMKKASTLYKERLKEGIRDPDKDVMVIGKFSENST
SDKTEMTPSTASPPSYNSVTKSDKDKYEKENREKENKGKDQKK
NT seq
6072 nt
NT seq
+upstream
nt +downstream
nt
atggcccagctgcttgtaccgcccggacctgacagcttctgccccttcggccccgagtcg
ctggccgccatcgagaggcgcatcgccgaggaggaggcccggagaccgcgggcggagcgc
cgcatcgacatcgacgacgagaatgggcccaggcccaacagcgacctggaggcggggaaa
tccctcccctttatctacggggacatccctccccgcctggtgtccactcctctggaggac
ttggacaccttctacagcaatcagaagaccttcatagtattgaatcgcgggaaggcaatc
ttccgtttcaacgccactcctgccttgtacatcttaagccccttcaaccctctgaggagg
gtagctattagagttttagtccactcgatgttcagcatgttgatcatgttcaccatcctg
accaactgtgctttcatgaccctcagtaaccccccggaatgggccaagaatgtagagtac
acattcacagggatttacaccttcgagtccctcataaagatcttggccaggggcttctgc
gtggggaagttcactttcctgcgggacccgtggaattggctggatttcagtgttatcctc
atggcatatgtcacagagtttgtggacctgggcaatgtctcagcgctgcgaaccttcagg
gttctgcgagccttgaaaacaatatcagtcatcccaggcttgaagaccatcgtcggcgcg
ctcatccagtcggtgaagaagctgtcggacgtcatgatcctcaccgtcttctgcctcagc
gtcttcgccctcatcggcctgcagctcttcatgggcaacctgaggcagaagtgcgtgcgc
ctgccgttcgccggcaactccaccaacagcagcagcaacggcactgccggcgacgacgat
gcggcgctcttcggcggcatcctgctggacatcaacaccacatttgcgcagaacgccacg
gagagccccttcaactggacggagtacatcagcgacgagcgtaattactatttcctcccg
ggccgtcgggacgctctgctctgtgggaacggcagtggcgctgggctgtgtccagagggc
tacacgtgtatcaaagccggccgcaatccagactacgactacaccagcttcgactcgttc
agctgggcattcctctccctgttccgactcatgactcaggactactgggaaaacctctac
cagcagactttgcgcgcagcagggaagccctacatgatcttcttcgtgctggtgatcttc
ctgggctccttctacctggtcaacctgatcctggccgtggtggccatggcttacgacgag
cagaaccaggcgaccatcgaggaggctcagcagaaggaggaggagttccaggccatgctg
gagcagctgaagagacagcaggaggaggcgcaggttgccgcggcagcagccacggagagc
ggggagtacagcgggagaggtggccccacctccgagtcgtcctctgggacgtcaaagctc
agctccaaaagtgccaaggagcggcgcaacaggcggaagaagaggaagcagagggaggag
gaggagagggggggccgcgacaagtttcacaagtctgagtctgaggacagtatcaagaga
accagcttccggttctccattgatgccaacaggctttcttatgagaagaggtgctcctcg
cccaaccagtctctcctcagtatccgcggatccctcttctctccccggaggaacagccgc
gccagcctgttcaacttccgcggccgggcacgcgacatgggctccgagaacgacttcgcc
gacgacgaacacagcaccttcgaggagagcgacagccgccggggctccctgttcctgccg
cgccgcctcgagcgccgttgcagcgccgtgagccagaccagcctcggggcgccgcggatc
atgctgcccgccaacggcaagatgcactgtgccgtcgactgcaatggcgtggtgtctctg
gtgggtgggacttctgtaacaacctccccagtgggtcttctgctgcccgagggaacaacc
acagatactgagctcaagaagcggtggccaggttttcgcaagccatccatggattattta
gatgaaccggtgggccggcagagagccatgagcgtggccagtatcctcaccaacaccatg
gaagagctggaagagtccagacagaaatgccccccttgctggtacaggttcgccaacacc
tccctgatctgggactgctgccccgcgtggctgaaaatcaaagacatcgtcagcacggtg
gtcatggacccgtttgtagatctggccatcacaatatgcatcgtcctcaacaccctgttt
atggccatggagcactaccccatgactaaagaattcaacagcgtactctcagttggaaac
cttgtgttcacgggcatcttcacagcagagatgtgcttcaagatcatcgccctggatccc
tactactacttccaggagggctggaacatcttcgacggcatcatcgtcagcctgagcctg
atggagctgggcttggccaacgtggagggcctgtctgtgctccggtccttcagattgctg
agggtcttcaaattggccaagtcatggcccactttgaacatgctgatcaagatcatcggg
aactcggtgggcgctctggggaacttgaccctggtgctggccatcatcgtcttcatcttc
gctgtggtcggcatgcagctgtttggcaagagctataaggaatgcgtgtgcaagatttcc
gatgattgccagctgcctcgctggcacatgcacgacttcttccactccttcctcatcgtg
ttccgggtgctgtgcggggagtggatcgagaccatgtgggactgcatggaggtggctggg
cagactatgtgcctgatagtcttcatgatggtcatggtcattggaaacctggtggtttta
aacctgttcctggctctcctcctgagctcattcagcgcagacaacctggcagcgaccgac
gatgacagcgagatgaacaacctgcagatcgccgtgggccggattcagcgtggcatcacg
ttcatcaaatccacagtgcggcagttcctccagagcctctgcttcggcggaggcggcggc
ggcaagggctccggtctggcggaggagagcaaaccgctggacgaactgcacagcaacggc
aagggcaactgcatctccaaccacacaaccgtggaacccagtgtggtgtacgtgacagag
ggcaacggacggccaggaggagggctggtggtaggggtcggtgttggtgaggacaccaca
gggaagtacccaatggaggagtgcgactacatgtcgtttattcacaaccccagcctgacg
gtcacagtgccgatcgcggtgggcgagtcagactttgagaaccaaaacacggaagatttc
agcagcgactcgtcggacgtggaggacagcaaagagaagctcgatgtagagccccagcgt
ctgagctcatcggaggggagcacggtggatatccgccccccaggagacggggaagattca
gtggagatggagccggaggagtcactggaaccagaggcctgcttcacagagggctgcgtg
agcaggttccagtgctgccagatcaatgaggagtacgagcattttaagcactggtggaca
ctcaggaaaacctgctttatcatagtggagcacaactggtttgaatccttcatcatattc
atgatcctgctaagcagtggagcactggcgtttgaggacgtttacatcgagcagcggagg
accatcaaaacagtgctggagttcgcagacaaggtcttcacttacatcttcatcctggaa
atgctgttgaagtgggtggcgtacggctttgtcaagtattttaccaacgcctggtgctgg
ctggacttcctcattgtagacgtgtccctggtcagccttgtagccaatgcaatgggctac
tccgagctgaccactatcaaatctctgaggacactgcgagccctccggcccctgagggcc
ctgtctcggtttgagggcatgagggttgtggtgaacgcgctgctgggggccatcccctcc
atcatgaatgtgctgttggtctgcctcatcttctggctcatcttcagcatcatgggcgtc
aacctgtttgcagggaagtactattactgcgtcaacaccaccacggatgtgatcttcccc
atcgacgttgtcaacaacaagaccgactgcctgaacttggtcaacgacagcgcccgctgg
aagaacgtcaagatcaacttcgacaacgtcggggccggctacctggctctgctgcaagtg
gcaacatttaagggctggatggacatcatgtacgcagcggtggactctcgagatgtggag
gaccagcctgaatacgaagtgaacttgtacatgtacctttactttgtcatcttcatcatc
ttcggctccttcttcaccctcaacctgttcatcggcgtcatcatcgacaacttcaaccag
cagaagaagaagtttggaggtcaggacatcttcatgacagaagagcagaagaaatactac
aacgccatgaagaagctgggctccaagaaaccacaaaaaccaatacctcggccaacaaat
gtattccaaggctgcgtgttcgactgcatcacaaagcaggccttcgacattgtgattatg
atcctcatctgccttaacatggtgaccatgatggtggagacggacgaccagaccccggac
atggacagaatcctctactggatcaacctggtcttcatcgtgctcttcacagcggagtgc
atgctcaagatgatctctctgcgtcactattacttcaccattggttggaatatattcgac
tttgtggtggtgatcctgtccatcgtaggtatgtttttatccaaagtgttcgagaagtac
tttgtgtccccgacgctgttccgagtgatccgcctggcccggataggccgcatcctccgt
ctcatcaaaggtgccaagggcatccggacgctcctctttgccttgatgatgtcgctcccc
gctctgttcaacatcggcctcctcctcttcctcgtcatgttcatctacgccatcttcggc
atgtccaacttcgcctacgtcaagcgcgaggcgggcatcgatgacatgttcaatttcgag
acgttcgggaacagcatgatctgcctgttccagatcaccacgtcggccgggtgggacagc
ctgctggcgcccatcctgaacaagagggagcccgactgcgacagccagatggagcaccca
ggcaactcctacaagggcaactgcggcaacccgtcagtggccatcttcttcttcgtcagc
tacatcatcatttgcttcctcatcgtggtcaacatgtacatcgccgtcatcctggagaac
ttcagcgtggccacggaggagagcggcgagccgctgagcgaggacgattttgagatgttc
tacgaggtgtgggagcgcttcgaccccgacgccacgcagttcatggagtacagcaagctc
tcggactttgcggacgctctcgatccgccgctgcgcatttccaagccaaacatgatccag
ctcatctccatggacctgccgatggtgagcggcgagcgcatccattgcctcgacatcctg
ttcgccttcaccaagcgggtgctgggcgagagcggtgagatggacgtgctgcgtgggcag
atggaggagcgcttcatggcctccaacccctctaaggtgtcctacgagcccatcaccact
accctgcgccgcaaacaggaggacatagcggccatgatcatccagaggaccttccgccgc
tacatgatctgcctggccatgaagaaggcctccaccctctacaaggagcggctgaaggag
ggcatccgcgaccccgacaaagacgtgatggtcattggcaagttctctgagaactccacc
tcggacaaaacggaaatgacgccctccacggcgtcgccgccgtcctacaacagcgtgacg
aaatcagacaaggacaagtacgagaaagaaaaccgtgaaaaagaaaacaaagggaaagac
caaaagaaatag
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