Cyclopterus lumpus (lumpfish): 117747843
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Entry
117747843 CDS
T09199
Symbol
capn1
Name
(RefSeq) calpain-1 catalytic subunit isoform X1
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04141
Protein processing in endoplasmic reticulum
clum04210
Apoptosis
clum04217
Necroptosis
clum04218
Cellular senescence
clum04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117747843 (capn1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
117747843 (capn1)
04217 Necroptosis
117747843 (capn1)
04218 Cellular senescence
117747843 (capn1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117747843 (capn1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
clum01002
]
117747843 (capn1)
Enzymes [BR:
clum01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
117747843 (capn1)
Peptidases and inhibitors [BR:
clum01002
]
Cysteine peptidases
Family C2: calpain family
117747843 (capn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_1
EF-hand_6
EF-hand_8
EF-hand_7
EF-hand_5
CAPN13-like_C_EFh
Motif
Other DBs
NCBI-GeneID:
117747843
NCBI-ProteinID:
XP_034413226
Ensembl:
ENSCLMG00005011508
LinkDB
All DBs
Position
18:complement(4545455..4563925)
Genome browser
AA seq
705 aa
AA seq
DB search
MEEHIYATGMAAKLRSQWDRDEGLGQIHKAVKFQGQDYEGLKAQCVQGRRLFEDNLFPCS
PSSLGFKELGPRTTKTSGVRWMRPPEFCKRPEFIVDGATRTDICQGALGDCWLLAAIASL
TLNDNLLHRVVPHGQGYQQGYAGIFHFQFWQFGEWVEVVIDDRLPVKEGKLLFVHSAEGT
EFWSALLEKAYAKLCGCYEALSGGSTSEGFEDFTGGVTEMFELKKAPADLYGIISRAIER
GSLLGCSIDITSSVDMEAVTFKKLVKGHAYSVTGVDEVVYRGNLTKLVRIRNPWGEVEWT
GAWSDNSREWDSVDRSVRGRLQNRSEDGEFWMSYGDFLREFTRLELCNLTADALQDSQMK
KWSSSIYQGEWRRGSTAGGCRNFPATFWLNPQFKIVLQHPDTPGGSDCSFLVGLMQKDRR
RKLQEGKDMETIGFALYEVPDEFTGRSGVHLKRDFFLTHASSARSELFINLREVSSRLQL
PAGEYIIVPSTFEPHKEADFVLRVFSEKPSDSEELDDAVTAELPAETELDESQIDAAFKN
LFRQLAGPDMEISLTELQTILNRIISKHKDLKTDGFTKEACRSMISLMDTDGSGKLGLTE
FHVLWEKIKRYLTIFRQFDLDKSGTMSSYEMRMALDSAGFKLTNQLFQLIILRYTEADMS
VDFDNFVTCLVRLETMFKTFHTMDTDKDGFMSLNFHQWITLTMFA
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atggaggagcacatttacgccaccggcatggccgccaagctgaggagccagtgggaccgc
gacgagggcctgggacagattcacaaggcggtgaagtttcagggtcaggactacgagggc
ctgaaggcccagtgcgtccagggccggaggctgttcgaggacaacctgttcccctgctcc
ccgtcgtctctggggttcaaagagctcggcccgagaaccaccaagacctccggagtccgc
tggatgaggcccccggagttttgcaagcgcccggagttcatcgtcgacggagcgactcgc
acggacatctgtcagggggctctgggggactgctggctgttggcagccatcgcctcgctg
accttaaacgacaacctcctgcaccgagtggttcctcacggtcagggctaccagcagggc
tacgctggcatcttccacttccagttctggcagtttggcgagtgggtggaggtggtgatc
gatgaccggctgccggtgaaggaggggaagctgctgttcgtgcactcggccgagggcacc
gagttctggagcgcgctgctggagaaggcctacgcaaagctgtgcggctgttacgaggct
ctgtcgggcggcagcacgtccgagggcttcgaggacttcaccggcggcgtgacggagatg
ttcgagctgaagaaagcccccgccgacctctacggcatcatcagcagggccatcgagcga
ggctccctgctgggctgctccatagacatcaccagctcggtggacatggaggccgtcacg
ttcaagaagctggtgaagggacacgcctactccgtgaccggcgtggacgaggtggtgtac
agaggcaacctgaccaagctggtgcgcatcaggaacccgtggggggaagtggagtggacc
ggcgcctggagcgacaactccagggagtgggacagtgtggaccgctccgtcagaggccgg
ctacagaaccgcagcgaggacggtgaattctggatgtcgtacggcgacttcctgcgcgag
ttcacccgcctggagctgtgcaacctgacggccgacgccctgcaggacagccagatgaag
aagtggagctcctccatctaccagggcgagtggaggaggggcagcacggccggaggctgc
aggaacttcccagccaccttctggctgaaccctcagttcaagatcgtcctgcagcacccg
gacacccccggaggatcggactgcagcttcctggtcggcctcatgcagaaggaccgcagg
aggaagctgcaggagggcaaagacatggagaccatcgggttcgccctctacgaggttcca
gatgagttcacgggcaggtcgggcgtccacctgaagagggacttcttcctcacccacgcc
tccagcgcccgctcggagctcttcatcaacctgagggaggtcagctcgcggctgcagctg
ccggccggggaatacatcatcgtgccgtcgaccttcgagccgcacaaagaggccgacttt
gtcctccgagtcttctctgagaagccctccgactccgaggagctcgacgatgccgtcaca
gcagagcttccagctgagacggagctggacgagagccagatcgacgccgccttcaagaat
ctcttcaggcagctggcaggaccggacatggagatcagcctcacggagctgcagaccatt
ttgaaccggatcatcagcaaacataaagacctgaagaccgacggcttcacaaaggaagcg
tgtcgcagtatgatcagcctcatggacacggacggcagtggaaagttgggcctgacggag
ttccacgtcctctgggaaaagattaagcgctacctgaccatattcaggcagttcgatttg
gacaaatcgggcacgatgagctcctacgagatgaggatggctctggattcggcaggcttc
aagctcaccaaccagctgttccagctgatcatcctgcgctacacggaggccgacatgtcc
gtcgacttcgacaacttcgtcacctgtctggtgcggctggagaccatgttcaaaaccttc
cacaccatggacacggataaagacggtttcatgtccctcaacttccatcagtggatcacg
ctgaccatgtttgcctga
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