Colletotrichum lupini: CLUP02_16527
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Entry
CLUP02_16527 CDS
T08561
Name
(RefSeq) CCR4-Not complex component
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
clup
Colletotrichum lupini
Pathway
clup03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLUP02_16527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clup03019
]
CLUP02_16527
Messenger RNA biogenesis [BR:
clup03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CLUP02_16527
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CLUP02_16527
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_TTP_bind
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
73350456
NCBI-ProteinID:
XP_049152593
UniProt:
A0A9Q8T841
LinkDB
All DBs
Position
9:complement(join(2148155..2148193,2148258..2154193,2154253..2154574,2154667..2154918))
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AA seq
2182 aa
AA seq
DB search
MVPQPRSGSFSPHPSQTLHTGVWHSTYPSQSAGLTAGASPSTSSPTGPSSLVKIAVAQVY
LLLGAIKEDKDRAKWETQAEQLQKLINEHGMEVFAKYFTRLVAAHAGHIFHGHTRPGTNG
NFHLLMSEMKKISHDANQAIKIAESIETGTEDLFRDFDMSTFMEAFKLDALEKTILALAF
KTGSRSDLKTKADAILSTNFPTFVNILARRELEEHADLTDSFIAVLVDRFIQYQPPNFNA
ASKSELAYKVQARWHGDQAPPPSEVLAALDLVRVLADKPPNALATYIQRTGGDFTRDEES
CVSYLQSRPQNVQLSEEQVSIALTYSTISQTPRYDPSILAAALRRVLPSSFRWQDVVSYF
DQRSARISSRQFLRLYNALLPIAEDDQTFDIQKLWGGNWEHPETQLSFICAFASLQPDQL
DASTIPGLIPTLTLETYVQSAPEVQQRAAFAAKHALVSVEALSAVFHVALHSVHASQSVE
AKRLFQEVVVPNLDIFVVSAFGVPKPWPTMAVDTLNSLFESFLYKRSTEYDFVLDSLWKK
DKEWVIQRLIEAHAIKPTDLPLIFEHALKHKWLDELVYLSNGFGLDLAALAHAEGYLDLV
NWARLNSERSNEIARSLLQFLLIKANLELQFQRPPDGQAAVKSSTTLQVRTVAAFLQILE
DFLPKTPLQDLIMVQRSCITVYPRLINYGEGFDDIIDANGKDGNALPTGANSKMEEHYKK
MYGDEIQVRNIVEVLDRYKHSRDPLDQDVFACMIHGLFDEYAHYVDYPLEALATTAVLFG
GIISHKLISDLPLKIGLGMILEAVRDYSPEDSMYKFGLQALMQLFSRFREWPGFCRQLLQ
IPGLQGTEAWKKAEDVVRDHEDELARSRNGVMPSAHVNSESLSNGNVPEGRPTDRQPQPF
QSINASDRSPGVDCEEPSSDTQGKIQFVLNNLTETTLQTMCQELREILEHRYQQWFASHL
VEERAKMQPNYHQVYLELVKLFEDKILWGEVLRETYVSVARMLNSEATMQNSTERSHLKN
LGGWLGLLTLARDKPIKHKNIAFKQLLIEAHDTKRLIVVIPFVCKVILQGVNSTVFRPPN
PWLMDIIHLLIELYHHAELKLNLKFEIEVLCKGLNLDHKSIEPSGEILNRAAVEDAQELV
SQDALETFENLSLNGISTGVTAGLSPQVIAASIPDLGPLIHIPPTNEMVVTATRLHEIVR
TALTQALQDIIQPVVDRSVTIAAISTQQMIHKDFATEPDENRVRTSAISMVKATAGSLAL
VTSKEPLRANFTNYMRNSSNDLPQGLPEGTIIMCVNSNLDLACNIIEKQAEERAVPEIEE
MIEPELEARRRHRLQRPNEPYVDASLSRWAWTIPNPFKLSPSMGGLNPEQMAIYEDFARQ
PRTTTSNAPSHVPSASDATRSLANEVLQDQFSTVPSLGATADAPAVQHLGSQVQQYAPVH
NGAMPTARPQAFQMDGRALIERVQKLLMELQRVATEAREEHFADLPRPHPVLDVVDALVQ
HMIKASQTSDEFAVFAADQIIQLIFSPIDDNLALESLVHVLETLRKISGPTLNNRVTAHF
RQQSGATFLQMPLLAALLRTDLLDWRNIDLSMSKALQQRKEGSLDFLDQMVDLTLLGSRP
MALYGDFVRTLEAAWSWIQDEPDSAIGQRLKAKLSGQTLPQTAQQESEGALQQDQMEYVF
DEWIHLCNNPDGSETSSIMFVQQMQIRGVVKSKDDLFVFLRIATDMSVDRFEHFVHSTGT
LTDAFLAVDALAKMINIFIRLHGEAQPTPTPSRAVYLDSVLAFITLVLNHHHVKRADHFN
QRVFHRLLSVLLYEISSTAEQLPESERSELFLKFAARLADLGPKYLPGFVFGWLSLLQHR
AFLPAVMKDRSGWVAFTRLLQLLLEHIGEQVKAIEPSNVAREIYRATLKLLVILQHDYSD
YLAAHSHQLVASVPPHCKQLLNAILTANPAAHPKMPDPSFPGLQADRVDGARDSPECLDN
SASILRDLGLLDVLDHALQNGPSEDTLAHITRAIVESQRPDTGFGHVPINANLRVVEAVT
LHVGNYAVQQSTQKGTDVFNPASSDVATMSILLHELPPEARYYLITSIANQLRFPNAHTN
YFSRILLEIFGQDMNDPEETEIRQQITRVLWERLIGYWPQPWGLMVTVVELLKNEKYMFF
DLPFVKSNPEVIERFHAILQRA
NT seq
6549 nt
NT seq
+upstream
nt +downstream
nt
atggtcccacaaccaaggtcgggatcattctctccacatccttcacagacactgcacact
ggagtttggcactcaacctatccatcacaatccgctgggttgactgcaggcgcaagtcca
agtacgagtagtccgacagggccaagttccctggtcaaaattgctgtcgcccaagtatat
ctcctcctcggtgctatcaaggaagacaaggaccgcgccaagtgggagacacaagcagaa
caactacaaaagctcatcaatgaacacggaatggaggtctttgcgaagtattttacgcgc
ctagtcgctgcccatgctggccatatcttccacggacatacacggccgggaaccaatggc
aattttcaccttctcatgagcgagatgaagaagatttcccacgacgccaatcaagccatc
aagattgctgagtctatcgaaaccggcacagaagacttgttccgtgactttgacatgtca
actttcatggaagcattcaagttggatgctctcgaaaagacgatattggcgctagccttc
aagacaggatcaaggtccgacctcaagaccaaggccgatgccatcttatccacgaatttc
ccgaccttcgtgaacattcttgcccggcgcgaactagaagagcacgcagatttgaccgat
tccttcatcgctgtactcgtcgatcgcttcattcagtatcagccaccaaacttcaacgcc
gcgtccaagtccgaactagcctacaaggtccaggcaaggtggcacggggaccaggctccg
ccgccctctgaagtgcttgccgcgcttgatttggttagagtgctggccgacaaacctcca
aatgctctggcaacatacatccaaagaacgggcggcgactttactagagatgaggagagt
tgcgtctcatacctgcaaagtcggcctcagaatgttcagctcagtgaagagcaggtgtca
atcgccctgacttacagcactatcagccagacaccccgttatgacccgtcgattcttgcg
gcagccctccgtcgagttctaccttcgtcatttaggtggcaagacgtggtttcatacttc
gatcagcgatccgctcgaatctcctcccggcaatttctccgtctatacaatgcgttgctc
ccgatcgctgaagatgatcaaacatttgatatccagaagctatggggtggaaactgggaa
catccagaaacccaactgtctttcatatgcgcgttcgcctcacttcagccggatcagctt
gacgccagtacaatcccgggtttgattccaacgctgacactggaaacctacgtgcaatct
gccccagaggttcagcaacgcgcggcgttcgcggccaagcacgcgttggtgtctgttgag
gcactgtcggccgtgtttcatgttgcccttcactcagtccacgcgtcgcaaagcgtcgaa
gccaagcgcctgttccaggaagtcgtggtacctaacctagacatcttcgtcgtttccgcg
tttggagtgccgaaaccatggccaacgatggcagtcgatacgctgaactctcttttcgaa
agcttcctctacaaacgatcaacggaatatgattttgttctcgacagcctgtggaagaag
gacaaggagtgggtgattcagcggctgattgaggcacatgccattaaaccaaccgatctt
cccttgatttttgagcatgccttgaaacacaagtggctcgacgagcttgtatacctatca
aatgggtttggactcgatcttgcagcgcttgctcatgccgagggttatcttgacttggtt
aattgggcgcgactcaactccgagagaagcaacgagattgcgcggtctttgctccagttt
ttgctgatcaaggcaaacttggaattgcaattccagcgcccccctgatggccaagctgcc
gtcaaatctagtaccactctccaagtgaggacagtggctgcttttctgcaaattctggag
gactttctccccaagactcccttgcaggatctcatcatggtgcagcgatcttgcatcacg
gtctaccctagattgatcaactatggcgaaggcttcgacgatatcattgacgccaacggc
aaagatgggaacgccttgcctaccggggccaacagtaagatggaagaacattacaagaag
atgtacggggacgaaattcaagtccgcaacatcgtcgaggtcctggatcggtacaaacat
tctcgcgatcctctagatcaagacgtgttcgcatgcatgatccacggcctgttcgatgaa
tacgctcattatgtcgattatcccttagaggcactcgcaacaaccgcagtgcttttcggt
ggcatcatctcccacaagcttatctcggatctcccgctcaagattggtcttggcatgatt
cttgaggctgtcagagactattccccagaggattcgatgtacaaatttggactgcaggcc
ctgatgcaactgttttctcgcttccgggaatggcccggcttctgtcgacaattgctgcag
atacccggcctacaaggtaccgaggcctggaagaaggctgaagacgtggttcgagaccac
gaggatgagcttgcacgatcgcgcaacggcgttatgccttcagctcatgtcaatagcgag
tctctttcgaacggtaacgtacccgaaggcagaccgacggatcgtcaaccgcagcccttc
cagtctatcaacgcatctgaccgttcgcctggagtcgattgcgaggagccatcaagcgat
acacaaggcaagattcagttcgtactgaacaatcttaccgagaccacccttcaaaccatg
tgtcaagagttgcgggaaattttggaacatcgttatcagcaatggtttgcaagccatctg
gtcgaggagcgagccaagatgcagcctaattatcaccaagtctaccttgaactggtcaag
ctgttcgaagacaagattctgtggggagaggttttgagagagacgtacgtgagcgtggct
cgtatgctcaactcggaggccaccatgcagaactcgaccgaacggtcacacctcaagaat
cttggaggctggcttggtcttctcactctggctcgcgataagccgattaagcacaagaac
attgccttcaaacagctcttgatcgaggctcacgacacgaaaaggctcatcgtggtcatt
cccttcgtttgcaaagtcattctccagggagtcaactcaaccgtatttcggccaccgaac
ccatggttgatggatatcattcacttgctcatcgagttatatcaccatgctgagctgaag
ctcaatctcaagttcgagattgaagtgttgtgcaagggtcttaaccttgaccacaaaagt
atcgagccttccggcgagattctcaaccgtgccgctgtcgaagatgcacaagagctggtt
tcccaagacgctttggagacgtttgaaaatctttcccttaacgggatttccacgggtgtc
acagctggcctctctcctcaggtcattgctgcatcaatcccagatcttggcccgctcatt
cacattccgcctacgaacgaaatggtggtaacggctacccgactgcacgagattgttcgg
actgctcttacgcaggctttgcaagacatcatacagcctgtggtagatcgatccgtcacg
attgctgccatttccacccagcaaatgattcacaaagattttgcgactgagcctgatgag
aacagggtcaggacatcagccatcagcatggtgaaggcgactgccggaagtttggcgctg
gtgacctctaaggagccgttgagagccaacttcacaaattatatgaggaactcatctaat
gatttaccgcaagggttaccggaaggcactatcatcatgtgtgtgaactcaaatcttgat
ctggcatgcaacatcatcgagaagcaagctgaggagagagctgtgccggagattgaggag
atgattgagcctgaactggaagcacgccgtcgtcatcgccttcagcgccctaatgagcca
tatgtggatgcctctctcagtcggtgggcgtggacgattcccaacccgttcaagttgtcg
ccaagcatgggcggcctcaaccctgaacagatggccatatacgaggacttcgcccgccag
cctcggaccaccacttctaatgctccatctcacgtaccctccgcttctgatgcgactaga
tcgcttgccaacgaagttctccaagaccagttctccacagtacccagcctgggagctacg
gcagatgcaccagccgttcaacacctcggctctcaggttcagcagtacgcccccgttcac
aatggagcgatgcctaccgcgaggccccaagcattccaaatggacggccgcgctttgatt
gaacgcgtccagaagcttctcatggaactgcagcgcgtggcgaccgaagcgcgcgaggaa
cacttcgccgacctcccgaggccacatcccgtcctagatgtggttgacgcattggttcag
catatgatcaaggcatcgcagacttcagacgagtttgctgtttttgctgctgatcaaatt
atccagctcattttcagcccgattgatgacaacttagccttggaaagcctggtccatgtc
ctggagacgttgcggaagatttctggcccaacgctgaacaaccgcgtcactgcccacttc
cgccaacagtctggagccaccttcctccaaatgccacttctcgctgcactgctgcgcacc
gacctcctcgactggagaaacattgatttatccatgtccaaagcgctgcagcaaaggaaa
gaaggctcgctagacttcttagaccagatggttgatctgactctcctcggcagccggcca
atggcgctttatggcgactttgttcggacactcgaggctgcctggtcctggatacaggac
gagccagattccgctatcggacagcgcttgaaggcgaagctctctggtcaaacactgcct
caaactgcgcaacaggagagcgaaggcgcacttcagcaggaccaaatggaatatgttttt
gacgaatggatccatctttgcaacaaccctgacggatcggagacctcgtccatcatgttc
gtgcagcagatgcaaatcagaggtgttgtcaagagcaaggacgacctttttgttttcctc
agaatcgcaacagacatgtcggtggacaggtttgagcacttcgtccattcgacgggaacc
ctgacggatgccttcctcgctgtggatgccctcgcaaagatgattaacatttttatcaga
cttcacggtgaagcacagcctactccgacgccaagccgagcggtctacttggattctgtc
ttggcctttatcactctcgtgcttaaccatcaccatgtgaagcgcgcggatcacttcaac
cagagagtgttccatcgtctgttgtcggttctcctttacgaaatcagctctactgcagag
cagctccccgagtcagagagatcggagctgttcctgaaattcgctgccagactcgcagac
ctcggaccgaaatatcttcctggcttcgttttcggctggctctccctcctccagcatcgg
gctttcttgcctgcagtaatgaaggatcgctccgggtgggtggcgtttaccagactcctg
caattgctcctggaacatattggcgaacaagtcaaagcgatcgagccctccaatgtagcg
cgagagatttatcgagccaccctcaagctactcgttattctacagcacgactactcggac
tacctcgcggcacactcacatcaactcgtagctagtgtccctcctcactgcaagcagctt
ctcaacgccatattgacagcgaacccagcagcccatcctaagatgccggatccttcgttt
cccggtctgcaagctgatagagtagatggtgccagggactcccctgaatgtctagacaac
tctgcgtctattctgcgcgacttaggcttgctcgatgtccttgaccacgcgctgcagaac
ggcccgtctgaggatacattagcacacatcacgcgagccattgtcgaaagccagcgacct
gataccggttttgggcatgtgcccatcaatgccaatttgcgagtggtcgaggcggtcact
cttcatgtcggcaactatgctgtccagcagtcaactcagaagggtacggatgtcttcaat
ccagcctcatcagatgtggccacaatgtccatcttgcttcacgagctgcctcctgaggcc
cgctactacctcatcaccagcattgcaaaccaattgcggttccccaatgcccataccaac
tacttcagccgtatcttactggagatcttcggccaggacatgaatgaccctgaggagacg
gagatcaggcagcaaatcactcgcgtgctttgggaacgcctgatcggctactggccccaa
ccctggggtctcatggtgacagttgttgagttgctcaagaacgagaagtacatgtttttt
gatctcccattcgtcaagtcaaacccagaggtcattgaacgcttccatgccattttacag
cgcgcataa
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integrated database retrieval system
