Clavispora lusitaniae CBS 6936: A9F13_01g05093
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Entry
A9F13_01g05093 CDS
T05147
Name
(GenBank) putative u6 snRNA complex subunit
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
clus
Clavispora lusitaniae CBS 6936
Pathway
clus03018
RNA degradation
clus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
A9F13_01g05093
09123 Folding, sorting and degradation
03018 RNA degradation
A9F13_01g05093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clus03019
]
A9F13_01g05093
03041 Spliceosome [BR:
clus03041
]
A9F13_01g05093
Messenger RNA biogenesis [BR:
clus03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
A9F13_01g05093
mRNA degradation factors
5'-3' decay
Lsm complex
A9F13_01g05093
Spliceosome [BR:
clus03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
A9F13_01g05093
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Myosin_N
Adeno_E4_34
Motif
Other DBs
NCBI-ProteinID:
OVF11056
UniProt:
A0AA91T498
LinkDB
All DBs
AA seq
128 aa
AA seq
DB search
MLTSIKNEEILVELKNGETVIGKLSNCDSWMNLTLSNVVHNYNKGEKFNKIEEIYIRGSH
IKYLRLPDSVMDHAKEQNMLNMEQRNRNQKRRGGFQRKNFNDGNRDNREGNRHFNSHSRG
TNGRRTFD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgcttaccagcattaaaaatgaggagattcttgttgagttgaaaaatggtgaaacagtc
attggcaaattatcgaactgtgactcttggatgaacttaactttgtcaaacgtcgttcat
aactataacaagggagaaaaattcaacaaaatagaagaaatctatatccgtggtagccat
ataaagtatcttaggttgcctgatctggtaatggaccatgccaaagaacaaaacatgcta
aacatggagcagagaaacaggaatcaaaaaagaagaggtggtttccagaggaagaacttt
aatgatggaaaccgtgacaaccgtgagggtaatcgtcatttcaatagtcattcgagaggt
acaaatgggagaagaacatttgactaa
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