Columba livia (rock pigeon): 102092254
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Entry
102092254 CDS
T02912
Symbol
TARDBP
Name
(RefSeq) LOW QUALITY PROTEIN: TAR DNA-binding protein 43
KO
K23600
TAR DNA-binding protein 43
Organism
clv
Columba livia (rock pigeon)
Pathway
clv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
clv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102092254 (TARDBP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clv03019
]
102092254 (TARDBP)
Messenger RNA biogenesis [BR:
clv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
102092254 (TARDBP)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TDP-43_C
TDP43_N
RRM_1
RRM_7
RRM_3
Motif
Other DBs
NCBI-GeneID:
102092254
NCBI-ProteinID:
XP_021137424
LinkDB
All DBs
Position
Unknown
AA seq
411 aa
AA seq
DB search
MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
LHAPEAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
KEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQRHMIDGRWCDCKLPNS
KQSPDEPLRSRKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKPFRAFAFVTFADDQVA
QSLCGEDLIIKGISVHISNAEPKHNSNRQLERGGRFGGNPGGFGNQGGFGNSRGGGGGLG
NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLVXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXSGAAIGLDSASNAGSSSGFNGGFGSSMDSKSSGWGM
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagtatatccgggtgacggaggacgagaacgacgagcccatcgagatcccgtcg
gaggatgacggcaccgtgctgctctccaccgtcacggcgcagttccccggggcctgtggg
ctgcgctaccgcaacccggtgtcgcagtgcatgcggggcgtgcggctggtggagggcatc
ctgcacgcgcccgaggccggctggggaaacctggtctacgtggtcaactaccccaaagat
aataagagaaaaatggatgaaacagatgcatcatcagctgtgaaagtgaaacgagcagta
cagaagacttcagatttaatagttttgggtcttccctggaaaaccacggaacaagactta
aaggagtatttcagtacatttggagaagttctgatggtgcaggtgaagaaggatattaaa
actggccactcgaaaggatttgggtttgttcggtttacggattatgaaacgcaggtgaaa
gtgatgtctcagcggcacatgatagatggaagatggtgtgactgtaaacttcccaattct
aagcaaagtcccgacgaacctttgcgtagcagaaaagtgtttgttgggcgctgcactgag
gacatgacggcagatgagctccaacagttctttgcccagtatggagaagtggtagatgtc
ttcattcctaaacccttccgagcttttgcttttgttacgtttgcagatgatcaggttgcc
cagtctctttgtggagaggacttgatcattaaaggaatcagcgtacatatatccaatgct
gaacctaagcacaatagcaataggcagttagagcgaggtggaagatttggtggtaacccg
ggaggctttgggaaccaaggggggtttggcaacagccgaggaggtgggggaggcctgggc
aacaaccagggcagcaacatgggtggaggaatgaacttcggagcctttagcatcaacccc
gccatgatggcagcggcgcaggcagcgctgcagagcagctgggggatgatgggcatgctg
gtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgggggcggccata
ggcttggactcagcctcaaacgcaggctccagcagcgggtttaacggaggctttggttca
agcatggattccaaatcgtcaggatggggaatgtag
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