Colossoma macropomum (tambaqui): 118806676
Help
Entry
118806676 CDS
T09004
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118806676 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmao03019
]
118806676 (cnot1)
Messenger RNA biogenesis [BR:
cmao03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118806676 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118806676 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Med13_C
Motif
Other DBs
NCBI-GeneID:
118806676
NCBI-ProteinID:
XP_036424071
LinkDB
All DBs
Position
Unknown
AA seq
2377 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFPQLSKVLK
LSKVQEVIFGLALLNSSNSDLRGFAAQFVKQKLPDLLRSYVDADLGGSQEGGFQDIAIEA
LHLLLSHLLFGQKGSSGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASVDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIPLQSISAPGSGIWSDGKDKSDGSQPHTWNVEVLIDVVKELNPNLNFKEVTYE
LDHPGFMIRDSKGLQMVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQQSLLSPEVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGVNEPFIQACVTFLKRRCPTIMGGLAPEKDQPKSAQLPPETLATMLACLQSC
AGSVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVDPLTAMGSL
NLGSSAASHTQNMQGFPTPLGSAFSNPQSPAKAFPPLTNPNPSTAFGGISGLSSQLPGPL
GSGSLSGIGSGLGMPAVNNDPFGPRKMSTPGLNPPTFQHSDLSHVWPEANQHFSKEIDDE
ANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFFPQYPD
KELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALDRFKNRLKD
YPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQAQAQSQPP
KAPQPGQASTLVTTTTTTTTVAKTSTISRPTAVGFKKDVPPSINTTNIDTLLVATDQTER
IVEPPENVQEKIAFIFNNLSQSNMSQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHS
LYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKN
KPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVVFRPQNPWTMAIMNVLA
ELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKEKLKNLDEQLSAPKKETKPPE
EMLPIVTTGVCLPFAAAPSAPAATATTATTGPPTPQFSYHDINVYALAGLAPHININANI
PLLQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESHMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTAQQREMMEEAAARIAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPMVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWPTDDMAHIYDKCISDL
EQHLHAIPPALAMNPQAQALRSLLEAVVMARNSRDGITALGLLQKAVEGLLDATSGADAD
LLLSYRECHLLVLKALQDSRAYGPQWCNKQITRCLMECRDEYKYNVEAVELLIRNHLVNM
QQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHITEADLFHTIETLMRTCAHSR
ANAPEGLPQLMDVVRSNYEAMIDRHHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREW
VNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQH
NPAASSAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLIQDHD
VRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWL
ELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKGTLRVL
LVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEIN
IAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLINALV
LYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNS
HTHYFSCTMLYLFAEANAEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWS
HDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7134 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
actaagaaaaactacagagccagccagcaagaaatacagcatattgtgaatcgtcacggc
cctgaagcagacaggcatctattacgctgtctcttttcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccaccagacacagtttctgatccaggagtgtgtgtct
cttattacgaagccaaattttatttcaactctctgctacgccattgacaatcctctgcac
tatcagaagagtttgaagccatcaccgcacttgtttcctcaactgagtaaagttctcaag
ctaagcaaggtccaggaggttatttttggccttgctcttctgaactccagtaactcagac
ctgcgagggtttgctgcgcagtttgtgaaacagaagcttccagacctccttcgctcatac
gtagacgcggacctcggaggcagccaggaaggtggcttccaggacattgccatagaggct
ctgcacctactgctctcacacctcctgtttgggcagaagggctccagcggagtcgggcaa
gagcagatagacgctttcctcaaaacactgtgcagagatttcccgcaggagcgctgtcct
gtggtgctcgcaccactgctgtaccctgagaaacgggacattctcatggacaggatcctg
ccagactctggagagttagccaagaccatgatggagagttctcttgcggagtttatgcaa
gaagttggctatggcttttgtgcaagcgttgatgaatgtaggaacataatcctacagtat
ggagtgcgtgaggtgactgcaagccaagtggccagagtgctgggcatgatggctcgcact
cactctgggctttcagatggaatccctctacagtctatctctgctccgggaagtggcatc
tggagtgatgggaaagacaaaagtgatggctctcagccccacacctggaatgtagaagtt
ctgattgatgttgtaaaggaactcaaccccaatttgaatttcaaagaggtcacctacgag
ctagaccacccaggcttcatgatccgggacagcaaggggctgcagatggtggtttatggg
attcagaggggactgggtatggaagtcttccctgtggatctcatctacaggccttggaag
catgctgagggccagctctctttcatccagcagtccttattgagcccagaggtgttctgc
tttgccgattacccctgtcacacagttgccatcgacatcctcaaagctccacctgaagat
gacaacagggagatagctacatggaaaagcctggacctggtggagagtctgctgcggctg
tctgaggtgggccagtatgagcaggtcaagcagctcttcagcttccccataaagcactgc
ccagacatgcttgtgttggcgctgctgcagatcagtacatcctggcacacgctgcgccat
gagctcatctctacccttatgcccatcttcctgggcaatcaccccaactctgccatcatc
ctgcattatgcctggcatgggcagggccagtcaccctctattcgccagctcatcatgcat
tcaatggcagagtggtacatgaggggggagcaatatgaccaggccaagctctcacgcatc
ctggacgtggctcaggacttgaagtctctatcgatgctgctaaacggtactccatttgcc
tttgtaattgaccttgctgcacttgcctctcgccgcgaatacctcaaactagacaaatgg
ctgactgataaaatcagagaacatggggtaaatgagcccttcatacaggcatgtgtgact
ttcttgaagaggcgctgtcccaccatcatgggagggctggccccggagaaagaccagccc
aaaagtgcacaactgccacctgaaacgctggccacgatgctagcctgtctgcagtcttgc
gcagggagtgtgtctcaagagctatctgagacaatcttgaccatggtggccaactgtagc
aatgtgatgaacaaggcccgtcagcctccaccaggggtaatgccaaagggtcgagctcct
agcaccagcagcctggatgccatctctccggttgacccactcactgcgatgggctcgctg
aatctaggtagctcagccgcctcccacacacagaacatgcaaggtttccccacgccgctg
ggttcagccttcagcaatccccagtctcctgctaaggcctttccccctctgaccaacccc
aaccccagcacagcctttgggggcattagcggcctctcctctcaactcccaggtccattg
ggttcaggcagcttgagtgggattggttcaggtctgggcatgccagcagtgaacaacgac
ccttttggcccgaggaagatgagcacgccagggctcaacccacccaccttccagcactct
gacctctctcatgtgtggcctgaggcaaaccagcactttagtaaggagatcgacgacgag
gccaacagctatttccagcgcatttataaccatccccctcaccctaccatgtccgtggat
gaggtgctggagatgctgcagaggtttaaggactctaacatcaagcgggagcgggaggtg
tttaactgcatgctgcgcaacctgtttgaagaatacaggttctttccccagtacccagac
aaagagctccacataaccgcctgcttgtttggcggcatcatagagaagggcctggtcacc
tacatggccctcggccttgctttgcgatatgtcctggaggcattacgcaaaccctatggc
tccaagatgtattactttgggattgctgcactggatcggtttaagaatagattgaaggat
tatccacagtattgccagcacttggcatccatagcccattttttgcagttcccccaccat
ttgcaagagtatatcgagtatggccagcagtcgcgtgaccctccagtgaaaatgcagggc
tcaatcaccacaccgggcagcctcgctctggcccaggcccaagcccagtctcagccaccc
aaagcccctcaacctggccaggccagcaccctggtgaccaccacgaccactaccaccaca
gtcgccaaaacctccaccatctccaggcccactgcagtaggttttaagaaggatgtgcca
ccctcgatcaacaccacaaacatagacactctgctggtggcgacagaccaaactgaaagg
attgtggagcctccggagaatgtgcaggagaagatagctttcattttcaacaacctgtcc
caatctaacatgtctcaaaaggttgaagagctgaaggagacggtgaaggaggaatttatg
ccctgggtgtctcaatacctggtgatgaaacgtgtcagcattgagccaaactttcacagc
ctctactccaacttccttgacacactcaaaaatccagagtttgtcaaaatggttctaaat
gagacctaccggaacattaaggttctcctgacctctgacaaggcagctgctaatttttct
gatcgatccctgctgaagaacttgggccactggcttggcatgatcaccctggctaaaaac
aaacccatcctctatactgatttggagttgaagtctctgttactggaagcttatgtgaaa
ggccaacaagagctgctatatgtggtcccctttgtggccaaagtcctggagtccagtctg
cgcagtgtggtcttcaggccacagaatccctggaccatggccattatgaatgtactggcc
gagcttcaccaggagcatgatctaaagctaaatctgaagtttgagattgaggtgctgtgt
aagaacctgtctctggacattaatgacctgaagccaggtaacctgctgaaggacaaagag
aaactgaagaatctggatgagcaactgtctgcaccaaagaaagagactaagcctccagaa
gagatgctgccaatagtcactacaggtgtatgtcttccatttgcagccgcgccttctgct
cctgctgccacagcaaccaccgcaaccacagggccacctaccccacaattcagctaccac
gatatcaacgtgtatgctctggcaggtcttgccccccatataaacatcaatgccaacatt
cccctgctgcaggcacatccccagctaaaacagtgtgtaaggcaggcaattgagcgtgct
gtccaagagcttgtgcaccctgtggtggaccgatccatcaagattgccatgaccacgtgt
gagcagattgtcagaaaagactttgctctggactcggaggagtcacacatgcgcgttgct
gctcaccatatgatgcgcaacctgactgctggcatggccatgatcacctgcagagagcca
ctactgatgagtatcgccaccaatctgaagaacagctttgctgctgccctccgggctccc
acagcccagcagagggagatgatggaggaggcagctgcccgcattgctcaggacaactgt
gaactagcctgttgcttcatccagaagacagctgttgagaaagctgggcctgaaatggac
aagagacttgccactgagtttgagctgaggaagcatgctcgtcaggagggccggcgctac
tgtgaccccatggtgcttacctaccaagcagaacgcatgccggagcagatccgccttaag
gtgggtggtgtggaccctaaacagctggctgtttatgaggagtttgcccgtaatgttcca
ggattcctgcccagcaatgacctgtctcagcccactgggttccttgctcagcctatgaag
cagcaagcatggcccacagatgacatggctcacatctatgataagtgcatctctgatctt
gagcagcatttgcatgccatcccaccagccctggccatgaacccgcaagcacaggccctg
cgcagcctcctggaggctgtagtaatggctcgcaattcccgtgatggaatcaccgctttg
ggtttgctgcagaaggctgttgagggcctgctggatgctaccagtggtgcagatgctgac
ttgctgctgagctatagagagtgccacttattggtgctgaaagcactgcaggacagccgt
gcctatgggccacagtggtgcaacaaacagatcaccaggtgcctgatggagtgtcgtgat
gagtataagtacaatgtggaggcagtggagcttttgatcagaaaccacctagtcaacatg
cagcagtatgacctgcacctggcccagtcaatggagaatgggctgcactacatggcagtg
gcgtttgctatgcagctggtgaagttgctgctggtggatgagcgcagcgtgagtcacatc
actgaagcagacttgtttcacactattgagaccctcatgaggacctgtgcacactccaga
gccaatgcacctgaaggcctgccccaactgatggatgtggtccgctccaactacgaggcc
atgattgacaggcaccatggtggacccaactttatgatgcactctgggatctctcaggcg
tccgagtatgatgatccaccaggcctacgtgagaaagcagagtatctactaagagagtgg
gtcaacctgtaccactctgctgctgcaggcagggacagcactaaggccttctctgccttt
gtgggccagatgcatcagcagggcattctcaagactgacgacctaatcacccgtttcttc
cggctgtgtacggagatgtgtgtggagatcagctaccgcgcacaggctgagcagcagcac
aacccagcggccagctctgccatcatccgtgccaagtgctaccacaacctggacgctttt
gttcgcctcatcgccctgctcgtcaaacactccggagaggccaccaacacagtcaccaag
atcaaccttctcaataaggtgttgggcattgtggtaggcgtgctgatccaggaccatgac
gtgcggcagacagagttccagcagttgccataccatcgcattttcattatgctgctgcta
gagctcaatgctcctgaacatgtgctggagaccatcaacttccagaccctcactgccttc
tgtaacaccttccacatcctgaggcctactaaagcacctggctttgtctatgcctggctg
gagctgatctcccatcgaatctttattgccaggatgctggcgcacacaccacagcagaag
ggttggcccatgtatgcccagctgctgattgatctgttcaagtacctggcacctttcctg
aggaatgttgagcttaacaaacctatgcaaatcctctataagggcaccctgcgagttctt
ctggtactgctccacgacttcccagagttcctgtgtgactatcactacggcttttgtgat
gtgataccaccaaactgcatccagctgaggaacctgatcctgagtgccttcccccgcaac
atgaggcttccagaccccttcactcccaacctcaaggtggacatgctaagtgaaattaac
atcgccccgcgcatccttacgaacttcactggtgtgatgccctcccagttcaaaaaggat
ctggactcatacctgaagacccgatctcccgttactttcctctccgaattgcgcagcaac
ctgcaggtgtccaatgagccgggtaatcgctacaacatccagctgatcaatgccctggtg
ctgtatgtgggcacacaggccatcgcccatatccacaacaagggcagcacaccctccatg
agcaccattacacattcggcacatatggacatcttccagaacctcgctgtggacctggac
actgaggggcgttatctgtttctgaatgcgatagccaatcagctgcgttatccgaacagc
cacacgcactacttcagctgcaccatgctctacctatttgctgaagccaatgcagaggcc
attcaggagcagatcaccagggtattgctggagaggctaattgtaaacaggccacatccc
tggggactcctcatcacctttattgagctgatcaagaacccagcctttaagttctggagc
catgactttgttcactgtgccccagagatcgagaagctgttccagtcagtggctcagtgc
tgcatggggcagaagcaggcccagcaggtgatggaaggcacgggtgccagttag
DBGET
integrated database retrieval system
