Colossoma macropomum (tambaqui): 118812045
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Entry
118812045 CDS
T09004
Name
(RefSeq) collagen alpha-1(IX) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao04510
Focal adhesion
cmao04512
ECM-receptor interaction
cmao04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118812045
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118812045
09142 Cell motility
04820 Cytoskeleton in muscle cells
118812045
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cmao00535
]
118812045
Proteoglycans [BR:
cmao00535
]
Extracellular matrix (ECM) proteoglycans
Others
118812045
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
118812045
NCBI-ProteinID:
XP_036432617
LinkDB
All DBs
Position
Unknown
AA seq
946 aa
AA seq
DB search
MALRRLSTTRSWVCQRVMMGFVTRLALIVTLCAPALAQLDLNRLDGDTVCPTMRNGQDDL
PGFDLITQFQLDVIPMKGVRKVEGSTPTQVAYRLDREANFQIPTRLNFPRGFPEEYSFMT
TFRMIKNTVNKVWNLWQVVDEDGLKQVGMRLNGDQQALEFFLTTMDGDLQTVTFPGLSVL
FNTKWHKVMIGVENELVTLYVDCQPVDQKPIKSKGYVNTEGDTLIGRLDTDPNTSVVFEL
QWMLIHCDPKRAQRESCTELPQAEMYANAEPDPKPIPGPAGPPGSPGPRGAPGEDGRDGR
DGLPGTPGSPGAPGSKGEPGQIGLPGQRGLQGLPGPVGPMGPMGPRGPVGERGLPGFPGP
AGPPGPETVGLPGPPGKAGIPGDEGNIGPEGPPGPRGSNGLPGPPGPPGPPGPPGSAGAG
NPEGSGETCQTMCPAGPQGLPGLPGMKGHRGLPGVDGLPGAPGEKGDPGAVGEQGPPGRP
GEDGQRGPIGYPGDHGDKGDRGPPGFNGIPGPTGPPGAPGVEGIRGRDGPPGPKGDEGAA
GPAGVRGATGAKGDTGEPGKNGLDGEPGLTGEKGEPGLPGALGVRGIVGIPGLPGKQGLV
GPVGPKGDIGAVGSVGPAGLPGKPGEPGAPGQDGVPGAKGVTGETGKQGPVGPMGPQGLT
GEKGDRGLMGPRGIKGHTGHKGDQGPIGPIGPKGSEGDPGATGDPGVKGDQGPPGIPGIK
GERGEKGQRGATGAEGRPGQPGHEGLAGPQGARGLEGDRGLPGPPGPRGYPGPKMSEEKI
REICSAVAEEHLDAYKKELAKKPLPIGAPGTPGPAGLPGPPGPAGTTGVAGPRGLPGPQG
PPGFYGLPGKQGPKGDAGPKGDKGDTGVGIPGTPGEPGAQGPPGKNGIGKDGQNGARGEA
GTPGIPGTPGTRGPPGPPGLCDPSNCFRPQPLYVVGGKKPINIKGP
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgcgccgtctcagcaccacacggtcgtgggtgtgtcagcgggtgatgatgggg
ttcgtgacccgtttggcgctcatcgtgacgctgtgtgctcctgctcttgcacagctggat
ctcaaccgattagatggcgacactgtgtgcccaaccatgagaaatggacaagatgacctt
ccagggtttgacctgatcacacagttccagttggatgtgattcctatgaaaggcgtgagg
aaggtggaggggtccactcccactcaggtggcctacagactggaccgagaggccaacttc
caaattccaacaaggctgaactttcccagaggtttccctgaggaatactctttcatgacc
acgttccgcatgatcaagaacacagtgaacaaagtgtggaacctgtggcaggtggtggat
gaagacggcctgaagcaggtgggaatgcggttgaatggagaccagcaggccctggagttt
ttcctgaccaccatggacggggaccttcagaccgtgacctttccaggcctttctgtgctc
ttcaacaccaagtggcacaaagtcatgatcggtgtggagaacgagctggtcaccctctat
gtggactgccagcctgttgaccagaaacccataaagagcaaaggctatgtcaacactgag
ggagacacgctgatcggcagactggacacagatccaaacacttctgtggtgtttgagttg
cagtggatgctgattcactgtgacccaaagagagctcagcgagagagctgcactgaactt
ccccaggctgagatgtatgccaatgctgagccggacccaaaaccaatccctggacctgct
ggacctccaggctctccagggcctcggggagctccaggagaggacggtcgcgacggacga
gacggtcttccaggcaccccgggctcccctggcgcacctggcagcaaaggagagccgggt
cagatcggcctgccgggccagagaggcttacaggggcttccaggaccagttgggcctatg
gggccgatgggaccaagagggccagtcggagagaggggtctgccaggttttcctggacca
gctggacctcccggacccgagactgttggacttcctggacctccaggaaaagctggtatc
ccaggagacgagggcaacattggccctgagggaccccctggaccaagaggatccaatggc
cttccaggacctccaggcccaccagggccacccggccccccggggtctgcgggtgcaggg
aatcctgaaggaagcggggagacttgtcagacgatgtgtccagccggacctcagggactt
ccagggctgccaggcatgaagggacaccgagggctccctggtgtagatgggcttccaggt
gccccaggcgaaaagggagatccaggagcagtaggagagcaaggccccccaggacgtcca
ggagaggatggtcagagaggccctataggttaccctggagaccacggcgataagggagat
cggggtcctccaggtttcaatggtattcccggacccaccggaccaccaggagctccgggt
gttgaaggaatccgaggacgcgacggacctcctgggcctaagggtgatgagggtgcagct
ggtcctgcaggtgtaagaggagccacaggtgccaaaggagatactggtgagccagggaag
aatggactggatggagaaccaggccttacaggagagaaaggagaacctggactgcctgga
gctcttggagtcagaggcattgtgggaatcccaggtttgccgggaaagcaaggacttgtg
ggacctgttggtccaaagggtgacattggagctgtcggttctgtaggtccagctggtctt
cctggtaaaccaggtgaaccaggagctcctggacaggatggagtccctggagccaaagga
gtcactggtgagacagggaagcagggtccggttggccccatggggcctcagggactcacg
ggtgagaaaggagatcggggtctgatgggtcctcgtggaatcaaaggtcacacaggtcac
aaaggagatcagggccctattggtccaattggtcccaaaggaagtgagggcgatccaggt
gctactggagatccaggagttaagggtgatcagggtcctccaggcattcctggcatcaag
ggagagcgaggagagaaaggacaaagaggagctacaggagctgaaggccgtccaggacag
ccaggacatgagggactggccggaccccaaggagcaagaggcctagagggagatagagga
cttccaggacccccaggtcccagaggataccctggtcccaaaatgagtgaagagaaaatc
cgtgaaatatgttcagcagtcgctgaagaacatctggatgcctacaagaaagaactagcc
aagaagcctctgcctattggtgctcctggtactccaggcccagcgggtctacctggacct
cccggaccagcagggactactggagtggctggaccccggggactgccgggccctcagggg
cctccaggattttatggcctgccaggaaagcaaggcccaaaaggtgatgctggacctaag
ggggataagggagatacaggtgttggaatcccagggactcctggagagccaggagctcaa
ggacctcctggcaagaatggcattggtaaggatggccaaaatggtgcccggggagaagca
ggaacacccggtatcccaggtaccccaggaaccaggggaccccctggaccccccggcctc
tgtgacccctcaaactgcttcagaccacagcccctttacgtagtcggtgggaaaaagccc
atcaacattaaaggcccatga
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