KEGG   Chitinibacter mangrovi: ABHF33_15835
Entry
ABHF33_15835      CDS       T11125                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
cmav  Chitinibacter mangrovi
Pathway
cmav02024  Quorum sensing
cmav03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cmav00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ABHF33_15835 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    ABHF33_15835 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmav03019]
    ABHF33_15835 (hfq)
   03036 Chromosome and associated proteins [BR:cmav03036]
    ABHF33_15835 (hfq)
Messenger RNA biogenesis [BR:cmav03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     ABHF33_15835 (hfq)
Chromosome and associated proteins [BR:cmav03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    ABHF33_15835 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: XBM00506
UniProt: A0AAU7F9Z4
LinkDB
Position
3360996..3361247
AA seq 83 aa
MSAKGQMLQDPFLNILRKEHVPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQMVYKHAI
STVVPSRSVNVPHDNPAAAATEN
NT seq 252 nt   +upstreamnt  +downstreamnt
atgagtgctaaggggcaaatgttgcaagatccttttttgaacatcttgcgcaaagagcat
gtgccagtgtcaatttacctggtcaatggcatcaagctgcaagggcagatcgaatcattt
gatcagtatgttgttttgctgcgtaataccgtcacgcaaatggtttacaaacacgccatt
tcaaccgtggtgccttcacgttcggtgaatgtgccgcatgacaatccggctgctgcagca
actgagaactga

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