Cucurbita maxima (winter squash): 111479079
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Entry
111479079 CDS
T05246
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111479079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111479079
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111479079
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111479079
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
111479079
NCBI-ProteinID:
XP_022979316
UniProt:
A0A6J1IQF9
LinkDB
All DBs
Position
Unknown
AA seq
2374 aa
AA seq
DB search
MLMFSTTTSSQIRFLLHSLTESNAESILNELCEFIDCGVEGSFILLRTCLDHFTSHGTDL
DNPLLRLVVSSVFKHLLDRPNFSTIFCESLKTRDINQVILENISNLLNLSMCERIGVGLA
VSDSENLDTRTCGNNFCITQIEELCANAVSMDSTQQIQDIIMFLQRSEGLSKHLDSFMQM
LSLVQLKDATEFVLSPLLSDELREEKILRNVNLSHESRDNDFDSILAEMEKEMSMGDIMK
ELGYGCTVNATQCKEIVSLFLPLTEITISKILGMIARNHTGLEDSRNLYTTFSLALGCSA
LSDLPSLNSWDVDVLIDTVKQLAPSIDWIRVMENLDHEGFYIPNEEAFTFFMSVYRRACQ
DTFPLHTICGSVWKNMEGQISFLKHAVSAPPEIFTFAHSGRRLAYIDGLHGHKLQLGHTN
EAWICLDLLDILCELAERGHARSVQSMLEFPLKNCPELLLLGMAHTNTAYNLLQFEVSFS
VFPLMLRNPLGSDLIFQLWHVNLTLVLRGFVDAQNSDPDCMVRIVEICQELKILLSVLDM
IPPSCSIRLAAIASRQECLDLEKWLSNSLNTYKDVFFEECLKFLKGIHYGGSQDFTSKPF
YPSNVISNIYLDTASTFLKVLRSNVGSTASAKLFEEMEKLHDAVLESNPKLQNGGAPDAP
GAEGGYTDDIEAEANSYFQEMFSDQLTIEAMVQMLSRYKESSVKREQSIFECMIANLFEE
YRFFPKYPERQLKIAAVLFGSVIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKAV
EQFVDRLIEWPQYCNHILQISHLRSTHVELVAFIEQALLRLSAGHSDSDATAGNVELQQK
HETAMDDRLKVIGSSVSDVKQFLSSVGQTSIQPVGDAPTNQKNTISTPAVLTSASGFVRP
SRGAASTRFGSALNIETLVAAAEKRETPLEAPASDVQDKISFMINNISLANLEAKAKEFS
EILKEQFFPWFAQYMVMKRASIEPNFHDLYLKFLDRVNSKALSKEIVQATYENCKVLLGS
ELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSK
ILEPCQSSLAYQPPNPWTMGILGLLAEIYSMLNLKMNLKFDIEVLFKNLSVDMKEITPTS
LLKDRKREVEGNPDFSNKDVGASQTQMVAEAKPSIMSSLNQVELPLEVATPSNSGNHTHL
LSQYVTPLHLSSGTLMEDEKLAALGLSDQLPTAPGLLQATTSPSPFSTNQLPAGIPNIGS
LVVINQKLNSLGLHIHFQRAVPIAMDRAVKEIVSGIVQRSVSIATQTTKELVLKDYAMES
DETRIFNAAHLMVASLAGCLAHVTCKEPLRGSISSQLRSSLQNLGVASDLLEQAVQLVTN
DNLDLGCAIIEQAATDKAIQTIDGEIAQQLSLRRKHREGVNTTFFDTGMYAQGPLGVVPE
ALRPKPGHLSISQQRVYEDFVRLPLQNQNSQAAQSTGSSITASGTGLSSQFGLSSGQLNS
GYTSGLVAGLEGGSRSLDDAVDSTCVPQLSATPGHIAADGVGVRGPENDLVVASFPLAAS
TPELPAADTSDNIKEPGSSSQPLSSPITTDRLATTMSEPSLTTRDALDKFQVISQKLEAL
VSNEARETDFQGVIAEVPEIILRCVSRDEAALAVAQKVFKVLYDNASNTFHVGAHLAILI
AIRDVCKLVVKELTSWVIYSEEERKYNKDITLGLIRSELLNLAEYNVHMAKLIDGGRNKA
ATEFAISLLQTLVVEESSVISELHNLVDALAKVAAKPGSSEPLQQLVEIIKNPSASTAAI
SGVNVGKEDKARLARDKKAPGHSIANRDDSSFLESEDPVGFRDQVSILFAEWYRICELPG
ANEAAFNHFILQLHQNGLLKGDDMTDRFFRLLTEISVAHCLSSEVINSGALQSPQQIQNL
SFLAIDIYAKLVFSILKGSGKTSLLSRILAVTVRFIQKDAEEKKASFNPRPYFRLFINWL
PDLGCLEPIVDGANFQILTAFANAFHALHPLKIPAFSYAWLELVSHRSFMPKMLTGNSQK
GWPYIQRLLVDVFQFMEPFLRNAELGPPVYFLYKGTLRVLLVLLHDFPEFLCDYHFTFCD
VIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLAEINQSPRILSEVDGALKSKQMKS
DVDEYLKTRQQGSSFLADLKQKLLLPPIEAASAGTRYNVPLINSLVLYVGMQAIQQLQAR
SPHAQSTANTVTLAVFLVGAALDIFQTLIVELDTEGRYLFLNAVANQLRYPNTHTHYFSF
VLLYLFAESTQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFIRCA
PDIERLFESVSRSCGGPKSADENMVQNWVPDTAH
NT seq
7125 nt
NT seq
+upstream
nt +downstream
nt
atgctgatgttttcgactacgacgtcgtctcagattcgcttcctcctccacagcttgact
gaatctaatgctgaatccattctcaacgagctctgcgagtttattgactgtggagttgaa
ggaagcttcatactgctcagaacttgtttggatcatttcactagtcatgggacagatttg
gacaacccgctgttgcgactagtagtttcttctgttttcaagcatctcttggacagaccc
aattttagtacaatattttgcgagtcccttaaaactagagatatcaaccaagttattctc
gagaacatctcgaatctgttaaacttgtcaatgtgtgaaagaattggagttggtctcgct
gtttcagattctgaaaatctcgatacaaggacgtgtggtaataacttctgcattactcag
attgaggaactttgtgctaatgctgtatctatggattccactcagcaaattcaggatatt
atcatgttcctccaacggtctgaagggctctcaaagcatttagattccttcatgcagatg
ctatctttggtgcagttaaaagatgctacagagtttgttttgtcaccgctgctttcagat
gaattgcgagaggagaaaattttaaggaatgtaaatctgtcacatgagtcccgtgataat
gattttgattccatcttagccgaaatggagaaggaaatgagcatgggagatattatgaag
gaactgggttatggatgcacagtcaatgctacacaatgcaaagagatagtgtccctcttc
ttgccgctgacagagattactatctctaaaatacttggcatgatagctcgcaatcacact
ggtcttgaggacagtcgaaatttatatacaacttttagtctagctttgggttgcagcgcc
ttgtctgatcttccatccttgaactcatgggatgtggatgttctcatagacacagtgaag
caacttgcacctagcattgactggataagagtaatggaaaatctggatcacgagggtttt
tacattcctaatgaggaagcattcacatttttcatgtctgtatacagacgtgcatgccag
gacacatttcctcttcatactatttgtggttcggtttggaagaatatggagggtcagatt
tccttccttaaacatgctgtgtcggcaccgcctgaaatatttacatttgctcactctggg
agacggctggcttatattgatggactgcatggccataagcttcaacttggacatacaaat
gaagcatggatatgtcttgatcttttggatatactgtgtgaacttgctgagagaggtcat
gctagatctgtgcaatcaatgctggagtttcctcttaaaaactgccctgagctattgcta
cttgggatggcacatactaacaccgcatacaatcttctccagttcgaagtttctttttca
gtcttcccattgatgttaagaaatcctcttggtagtgatttaatctttcagctatggcat
gttaaccttactctggtgttacggggatttgtggatgctcaaaacagtgatccagattgc
atggttaggatagttgaaatctgccaagaattgaagatacttttgtcagtactagatatg
attcccccttcctgcagtatcagattagctgctattgcttcacgacaggaatgtttagac
cttgagaagtggttgagtaacagtttgaacacatacaaagatgtattttttgaggaatgc
ctcaagttcttaaaagggattcattatgggggatctcaagattttacatccaaacctttt
tatccttccaatgtgatttcaaatatttacctcgacactgcttctactttcttgaaggtt
ctaagatctaatgtgggttctactgcttctgctaaactatttgaggaaatggagaagttg
catgatgctgttctggagtcgaacccaaagctgcaaaatggtggtgctccagatgcgcct
ggagcagaaggaggatatacagatgacattgaggccgaagctaactcctacttccaagaa
atgttttccgatcagttgaccattgaagcgatggttcaaatgctttctcggtacaaggaa
tcttcagttaaaagggaacaatcaattttcgaatgcatgattgcaaatctttttgaggag
tatagattcttcccgaaatatcctgaaagacagctgaaaattgcggcagttctctttggc
tctgttatcaagcatcagcttgtaactcaccttactcttgggattgcattgcgtggtgtc
cttgatgcacttcgtaaacctgcagattcaaaaatgtttgtgtttggtaccaaagctgta
gagcagtttgtggatcgtttgattgagtggccgcagtactgcaatcatattctgcaaata
tcacatttacgaagcacgcatgtggaacttgttgctttcattgaacaggctcttctgagg
ctatctgcaggccattctgattctgatgctactgcaggaaatgtggagctacaacaaaaa
catgaaactgccatggatgatcgacttaaagtcattggatcatcagtcagtgatgtaaaa
caatttttatcttctgtggggcaaacttcaattcaacccgtaggtgatgctcctacaaat
caaaagaatacaatcagtactccagctgtgttgacttctgcctctggttttgtccgtcct
tcacggggggctgcttctaccaggtttggttcagctttgaatattgaaacgcttgttgct
gcggctgagaaaagagaaactcctctagaggctcctgcatcggatgtacaggataagatt
tcatttatgattaataatatttcacttgctaatcttgaagccaaagcaaaagaattttct
gagattttgaaggaacaattttttccctggtttgctcagtatatggtcatgaagagggct
agtattgagccaaatttccatgacttgtatttgaagtttctggaccgagttaattcaaaa
gctttgagtaaagagattgttcaggctacttacgagaactgcaaggttctgttaggatca
gagcttataaaatcaagctcagaagaacgttcactgctgaagaatttgggaagctggctt
gggaaactaacaattggcaggaatcaagtattgcgagctcgtgaaatagatccaaagtct
ttgataattgaggcatatgaaaaagggttaatgattgctgtaataccatttacttctaag
attcttgaaccatgtcaaagtagtttagcataccaacccccaaacccttggaccatgggc
attcttggacttctggcagagatttattcaatgcttaacttgaaaatgaacctgaagttt
gacattgaggttctgtttaagaatcttagtgtggatatgaaagaaataacgccaacttct
cttcttaaagaccggaagagagaagttgaaggtaatcctgatttttctaataaggacgtt
ggagcatctcagacgcagatggtagccgaagcaaagcccagcataatgtcttctttaaat
caagtggagcttccactggaggttgcaaccccatcgaattctggaaatcacactcacctg
ttatcgcagtacgttaccccgcttcatctttcttctggcacattaatggaagacgaaaag
cttgctgcgctgggcttgtctgatcagcttcctactgcccctggactcttacaagctaca
acgtcgccatcaccattctcaaccaatcagcttcctgcgggtatccctaatataggaagt
cttgttgtgatcaaccagaagcttaatagtttgggattgcacattcattttcagagagca
gttccaattgcaatggatagagctgtcaaagagatcgtttctggtattgtgcagcgtagt
gtctctatagccacccaaacaacaaaggaactggttttgaaggattatgccatggaatca
gatgagacccgaatatttaatgcagcgcatttgatggttgctagtctggctggatgtcta
gcacacgtgacttgcaaggaacctttacgaggttcaatatcaagtcaactcagaagttct
ctccagaatttgggcgttgccagtgatctgcttgagcaagctgttcagcttgttacaaat
gataaccttgatcttggttgtgccataattgaacaggctgctacagataaggctatacaa
accattgacggtgaaatagcccaacagttgtctttaagaaggaagcatagagagggtgtt
aatacaaccttttttgacactggtatgtacgcacaaggacctcttggtgttgtgcctgag
gctctccgtcccaagccaggacatctgtccatttcacaacagcgagtttatgaggatttt
gttaggcttcccttgcaaaatcaaaatagccaagctgcacagtctactggttcttcaatt
acagctagtggtactggtttgagtagtcaatttggtttgtcatcgggacaactgaactca
ggatacacatctggacttgttgctggactcgaaggaggatctcggtctctggatgatgct
gtagactctacctgtgtgccccaactaagtgcaactccagggcatattgctgctgatggt
gttggcgtgcgaggtccagaaaatgatttggtcgttgcttctttccctttggctgcatca
acccctgagctgcctgcagctgatacctctgacaatataaaggaacctggatcttcttcc
caaccattgtcctcacctatcacaactgatcgtcttgcgactactatgtcagaaccctca
cttaccaccagagatgcattggataaattccaagttatttcacagaagttggaggctttg
gttagcaatgaggctcgggaaactgacttccagggtgtcattgccgaggttcctgagatc
attctaagatgtgtaagccgggatgaagctgctcttgctgtggcgcaaaaggtgttcaaa
gttttatacgacaatgcatcaaacacttttcatgttggtgcccatcttgccattctgatt
gcaattcgcgatgtttgcaagctagttgtaaaggaacttactagctgggtgatttactcc
gaggaagagcggaagtacaacaaggacattactcttggccttattcgcagtgaactacta
aatcttgcagaatataatgttcatatggcgaaactcattgatggaggcaggaataaggcc
gcaacagagtttgccatatccctcctccaaacattggttgtggaagaatcaagtgttatt
tccgaacttcacaatcttgttgatgcattagctaaggtagctgcaaaacctggatcttca
gagcctttgcaacaactggttgagataatcaagaatccatctgctagtacagctgctatt
tctggggttaacgttgggaaagaggataaggctagacttgccagagacaaaaaggctcct
ggacattccatagcaaacagagacgattctagttttctcgaatctgaagatccagttggt
tttcgtgatcaggtatcaatactatttgctgaatggtaccgaatatgtgagctacctggt
gctaatgaagctgcatttaaccatttcatattacaattacatcagaatgggcttctgaaa
ggggatgatatgacggatcggtttttccgtctgctcacagaaatttctgtggcacattgt
ttatcatctgaagtaattaattcgggtgcattacaatcaccacagcaaatacagaatcta
tcgttccttgcgatcgacatttatgccaagcttgtattttcgatcttgaagggatctggt
aaaacttctcttttatccaggattctggcagtgactgtaagattcattcagaaagatgcc
gaagagaagaaagcatcgtttaatccgagaccatattttagattgtttattaactggctt
cctgaccttggctgtctagaacctattgttgatggtgccaactttcagatattgacagct
tttgctaatgcatttcatgcgttgcaccctcttaagattccagcgttcagctatgcttgg
cttgagctggttagtcatagaagttttatgccaaagatgcttactgggaatagtcagaag
ggttggccttacatccagcgtttgctggtagacgtgttccaattcatggagccatttttg
cggaacgccgaacttggaccaccggtttattttctttataaaggcacccttagggtgttg
cttgtcttacttcatgatttccctgagttcctatgtgactatcattttactttctgtgat
gtgattcctcctagctgcattcagatgcggaatattatccttagtgcgtttcctcgtaac
atgagactaccagatccatccacccccaatttgaagattgacttgcttgcggaaatcaat
caatccccacgtattctatctgaggtggatggagctcttaaatcaaagcagatgaagtcc
gacgtggatgagtatctcaagacaaggcaacagggatcatcgtttctggctgatctgaag
cagaagttgctacttcctcccattgaagctgcttctgctgggacgcgttacaatgtgcct
ttgatcaactccctcgtactttacgttgggatgcaggccatccaacaacttcaggcaaga
agtcctcatgctcagtcaacggctaatactgttacattagcagtatttctggtgggtgct
gctctagatattttccagactctgatcgtggagttggatactgaagggcgctacctcttc
ctcaatgccgtcgcaaaccaacttcgttatccgaatacccacacccattacttttctttt
gtgctcctatacctgttcgctgaatcgactcaggaaattatccaggagcagataacaaga
gtgttgttggaacgcctcattgtcaatagacctcatccatggggactgctgattacattc
attgaacttattaagaatccaagatacaacttttggaaccggtcctttataagatgtgca
ccagatatcgaaagactatttgagtcggtctctagatcctgcggtggccctaaatctgca
gacgagaacatggttcaaaattgggtacctgataccgcccactag
DBGET
integrated database retrieval system
