Cucurbita maxima (winter squash): 111495397
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Entry
111495397 CDS
T05246
Name
(RefSeq) cleavage stimulation factor subunit 50 isoform X1
KO
K14406
cleavage stimulation factor subunit 1
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111495397
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111495397
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
111495397
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_TEP1_2nd
WD40_Gbeta
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
Beta-prop_RIG_2nd
NBCH_WD40
WD40_RFWD3
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_NWD2_C
Beta-prop_WDR75_1st
Cytochrom_D1
Beta-prop_SCAP
Beta-prop_VPS8
Ge1_WD40
Beta-prop_IFT122_1st
WD_LRWD1
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
111495397
NCBI-ProteinID:
XP_023001188
UniProt:
A0A6J1KPS8
LinkDB
All DBs
Position
Unknown
AA seq
437 aa
AA seq
DB search
MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQAASAAASASRTPLNVDVPPNKLMELVA
KGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRASAIDFSTVQDTKGSSKNFPKHE
TRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDSKDGPVRPVIRTF
YDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSG
DYLLAGTDHPIAHLYDVNTFQCFLSANVPEIGNSGAINQVRYSATGSMYVTASKDGAVRL
WDGVSAKCLRSIVSAHGTAEATSAKFTKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGAT
HMQLRCQAAFNDNEEFVLSIDEPSNEIVIWDALTAERVARWPSNHIGPPRWLEHSPTESA
FISCGTDKSIRFWKETL
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggaaggcagcttcgaacagacccttcaagatggaaagctttatagacaagtcaattct
ctcattgttgctcatcttcgcgatcataacctcacccaggctgcaagtgctgctgcttca
gcttcaaggacaccgctgaatgttgatgttccgcctaataagcttatggagctcgttgca
aagggtcttgcggtggagaaagaggagatgttaagagggagtcctgcttctgcattgtac
gaatttggttcatcggtgccctctacatttgggtctacacagccttctcgtgcttctgcc
atcgactttagcactgtgcaggatacaaaaggttcatcgaagaattttccaaagcacgag
actcgacatctttcagagcataagaatgttgccagatgtgcaaggttcagcgctgacggg
agatttgttgccacaggaagcgcagatatgtcgataaagctgtttgaggtggcaaagatc
aagcagatgatgctgccagattcgaaagatggtcctgtccgacctgttataaggacgttt
tacgatcacattcaaccaataaatgatttggattttcatcctcagaatactgttcttata
tctggtgcaaaagatcagactataaagttctttgacttctccaaattgactgctaagaaa
gcattcagagttatccaggatacccataacgtgcgttcgatatcacttcatccttcagga
gattatcttttagcgggaacggatcatccgattgcccacctgtatgatgtcaatactttt
cagtgctttctttctgcaaatgttccagaaataggaaatagtggagccataaatcaggtc
aggtattcagcaacaggcagtatgtatgtcactgcttcaaaagacggtgcagttcgttta
tgggatggcgttagtgcgaaatgtcttcgctccattgttagtgcacacggtacagcagag
gcaaccagtgcaaaatttacaaaggatgaaaggtatgttctttcttgtggaaaggactcg
actgtaaagctctgggacgtggggacgggaaaactggtcaaacaatatgttggagctact
catatgcaattgaggtgtcaggctgcgttcaatgataatgaggagtttgtgctatcaata
gacgaaccaagcaacgagattgttatctgggatgctctgacagcagagcgagtagcaagg
tggccttcgaaccacatcggtccaccccggtggctcgagcactcaccaacagaatcagcc
ttcatttcgtgcgggactgataaatcaatacgcttttggaaggaaactctctag
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