Clavibacter nebraskensis: CMN_00029
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Entry
CMN_00029 CDS
T02530
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cmc
Clavibacter nebraskensis
Pathway
cmc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CMN_00029 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmc03019
]
CMN_00029 (recQ)
03400 DNA repair and recombination proteins [BR:
cmc03400
]
CMN_00029 (recQ)
Enzymes [BR:
cmc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CMN_00029 (recQ)
Messenger RNA biogenesis [BR:
cmc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CMN_00029 (recQ)
DNA repair and recombination proteins [BR:
cmc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CMN_00029 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF3553
HEM4
Cas3-like_C_2
MarR_2
DUF7342
PcrA_UvrD_tudor
Dimerisation
Motif
Other DBs
NCBI-ProteinID:
CCE74011
UniProt:
A0AAI8ZFM3
LinkDB
All DBs
Position
31865..33676
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AA seq
603 aa
AA seq
DB search
MKQNHTAAGTTRTTRTTTRTAHDRTADERPADDRPAAEDPAIVPVPAPGPEPEDALRVAR
ESFGWDELHDGQVRTIGPLVRGRDALVVMPTGYGKSAIYQVATVLMEGLTVVVSPLIALQ
ADQVQNLEDAPAAPPARVINSTIRGKALEEAWATVEEPGARIVFLTPEQLARDEVVERLV
ARGVSLVVIDEAHCVASWGHDFRPDYLGLGGVIDALGHPPTVAMTATGSTPIRTEIEERL
GLRDPFVLSSGFDRPNIRLEVRRHTEESEKRRAIVAHVVEQTQPGLVYVATRQDAEDYAD
EVRAAGLRVDAYHAGLPAAERERVQTAFHEDAVDVVVATSAFGMGIDKPTVRYVIHAAPP
ESVDAYYQEAGRAGRDGEPAVGILHYRAEDLGLRRFFAARTPRPANLRDVYAAVAVAGVD
GPVRPAAVAERAGMSARTVGGVLNLLVDAGVLGSDRDGAYVREELDPREAAARAKEVAQE
RERIEVSRLDMMRGYAETPQCRRQYLLGYFGEESPERCGNCDACDRLAEVDAHEEAMGTH
FAEDAPAESDEMFPAQSPVTHAEWGPGTVMSTEEDRITVFFEKEGYRVLSRRIVEEGELL
RPA
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
gtgaagcagaaccacaccgcggcgggcacgacccgcaccacccgcacgaccacccgcacc
gcgcacgaccgcacggccgacgagcggcccgccgacgaccggcccgccgccgaggatccg
gccatcgtgcccgtacccgcgccgggccccgagcccgaggacgcgctgcgcgtcgcccgc
gagtcgttcggctgggacgagctgcacgacggccaggtgcgcacgatcggcccgctcgtc
cgcggccgcgacgcgctcgtcgtgatgcccacgggctacggcaagtccgcgatctaccag
gtcgccaccgtgctgatggagggcctgaccgtcgtcgtctcgccgctcatcgcgctgcag
gccgaccaggtgcagaacctcgaggacgcgcccgccgcgccgcccgcgcgcgtgatcaac
agcaccatccgcgggaaggcgctcgaggaggcgtgggcgaccgtggaggagcccggcgcg
cggatcgtgttcctcacgcccgagcagctggcgcgcgacgaggtcgtcgagcggctcgtg
gcgcgcggggtgtcgctcgtggtgatcgacgaggcgcactgcgtggcgtcgtggggccac
gacttccggcccgactacctggggctcggcggggtgatcgacgcgctcgggcacccgccg
accgtcgcgatgacggcgaccggatccacgcccatccgcaccgagatcgaggagcgcctc
ggcctccgcgacccgttcgtgctctccagcggcttcgaccggccgaacatccggctcgag
gtgcgccggcacaccgaggagtccgagaagcggcgcgcgatcgtcgcccacgtcgtggag
cagacgcagccgggcctcgtctacgtcgccacgcgccaggacgccgaggactacgccgac
gaggtccgcgccgccggcctccgcgtcgacgcgtaccacgcgggcctgccggcggccgag
cgcgagcgcgtgcagacggcgttccacgaggacgccgtggacgtggtcgtcgccacgagc
gcgttcggcatggggatcgacaagccgaccgtgcgctacgtgatccacgcggcgccgccc
gagtccgtcgacgcgtactaccaggaggccgggcgcgcgggccgcgacggggagccggcc
gtggggatcctgcactaccgcgccgaggacctcggcctccgccgtttcttcgccgcgcgc
acgccccggccggcgaacctccgcgacgtgtacgcggcggtcgcggtggcgggcgtcgac
ggaccggtgcggccggccgcggtcgccgagcgcgcgggcatgtcggcgcgcacggtgggc
ggcgtgctcaacctgctcgtggacgcgggcgtgctcggatccgaccgcgatggcgcgtac
gtgcgcgaggagctggatccgcgggaagccgccgcccgcgccaaggaggtcgcgcaggag
cgcgagcgcatcgaggtctcgcggctcgacatgatgcgcggctacgccgagacgccgcag
tgccgccgccagtacctgctcggctacttcggcgaggagtcgccggagagatgcggcaac
tgcgacgcgtgcgaccggctcgcggaggtggacgcgcacgaggaggcgatgggcacgcat
ttcgccgaggatgcgcccgccgagtccgacgagatgttcccggcccagtcgccggtgacc
cacgccgagtgggggccgggcaccgtgatgagcacggaggaggaccggatcaccgtcttc
ttcgagaaggaggggtaccgcgtgctgtcgcggcggatcgtggaggagggggagctgctg
cggccggcgtga
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