KEGG   Cyanidioschyzon merolae: CYME_CMB002C
Entry
CYME_CMB002C      CDS       T00175                                 
Name
(RefSeq) probable splicing factor 3b subunit 1
  KO
K12828  splicing factor 3B subunit 1
Organism
cme  Cyanidioschyzon merolae
Pathway
cme03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cme00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CYME_CMB002C
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cme03041]
    CYME_CMB002C
   03036 Chromosome and associated proteins [BR:cme03036]
    CYME_CMB002C
Spliceosome [BR:cme03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    CYME_CMB002C
 Complex B
    CYME_CMB002C
 Complex C
   U2 SnRNP specific factors
    CYME_CMB002C
Chromosome and associated proteins [BR:cme03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    CYME_CMB002C
SSDB
Motif
Pfam: TOR1L1_N HEAT_GCN1 Adaptin_N HEAT_2 HEAT_GCN1_C_2 TPR_IPO5 HEAT HEAT_EZ HEAT_Maestro TPR_CAND1 ERAP1_C HEAT_ECM29
Other DBs
NCBI-GeneID: 16992372
NCBI-ProteinID: XP_005535116
UniProt: M1V3N9
LinkDB
Position
2:complement(3437..6301)
AA seq 954 aa
MEALESSLERLHGPVVMQSAPQKARKRTRWTVVVDGVVPGTSSESVQSGTVSESSKSTDG
PEPEQTRAQGLLSVATLRSCRTAVDEAVAGALVRENHASEVIVQHVLELKNASVLAERKA
AQRALTYAITNRGDAGGVFRTLFAFWRAGEWDATATLALMRALPRFADAAGEHVRLYVSE
LLHLTMLGRLPELDPNRTSNFEDKSVERQARREHEAPTSYIDLDRAMNPDAPENTSLLRS
LLRLVGVAPIIQAIRPWFESPEYLIRLCAAHVIAFLASSAGFATIQPLLEAMLSSRRYGS
LPRETAALSLRLLATRWSGDLHPHLPSFVQFVLRLVSDPDPLVKLAGARAVAALATVVSA
QDSASLEALRAPIWDGVRAYYDRTLVAFLSAAAALIRCMPLEERAFHAAALLAPTMRAMR
THCAVGVLEQLLVHGSIPEDTLASNVLGEFLEMCFLRPERSVCRAAARSAVRRRLARVAA
LMSERVGVSAVLTDDVVCCLDAADADPVIVLLLLETVRQVLRSGRGQLDLKPASERRLIQ
GLLQCLRRSAPTPYRHVSSILWMLGARVVPWSETLVHLLVARLQSAAAATRAEAARLVCR
LVPMWVQLGDADALARLGIVLAECYNEVYPEALAAMLEALGAILDHLTAYLPPSEVPFAE
ILSRLVPVLRNPAEEVQAAAALVVMVLARHAGSSIPDSEWLRVAQELRRALGAQRRQVRY
RAVDAYGAVARVLGQIDSLGQTLLAALRQTDRSMRVAASVALAIATLQSPDRMLAQLLDA
YIGEQDKNVQTGILKSVGFYCAFSGDANRSWNALQVYAVTRLLESALIERYDTHRQLACE
ATGHFALALVGHGYEEAMLHLLNHVWPAYVAQVSSPEDTHLEHAVAFSVQALGIALGAGV
LNAYLTQGLFHPAQAVRKLYWTVQRWQMEYFGGWSGVSSCLFGLKGPEWPAATL
NT seq 2865 nt   +upstreamnt  +downstreamnt
atggaagcgttggaaagctcgcttgaacgactccatggaccagtcgtgatgcagagcgct
ccacagaaggcacggaaacggacccgctggactgtggttgttgacggtgtcgtgccaggg
actagtagtgagagtgtgcaatcaggaacggtttccgagtcatcaaagtctactgatgga
cctgagcctgaacagactcgagcccaaggtttgctgtcggtggcaacgctacgttcgtgt
cgcactgccgtggacgaggcggtagctggcgctctggttcgggaaaaccacgcctctgag
gttatcgtgcagcacgtgttggagctgaaaaacgccagtgttctggctgagcggaaagct
gcacaacgcgctctaacctatgctatcacgaacagaggcgatgccggcggtgtcttccga
acacttttcgcgttctggcgcgctggcgaatgggacgccacggcgacgctggctttgatg
cgtgcgctaccccgcttcgccgacgccgctggagaacatgtcaggttgtacgttagcgag
ctccttcatctgacgatgctgggcaggctgcccgaactcgatccaaaccgaacctcaaac
ttcgaagacaagtccgtcgaacgtcaggcgagacgagagcacgaagcgccaacgtcatat
atcgacctggatcgcgcaatgaacccagacgcgccggagaatacctccctactgaggtca
cttctccgcctggtcggcgttgcaccgatcatccaagctatacggccctggttcgaatca
ccagagtacctgattcggctctgcgccgctcatgtcattgcgtttctggcgtccagtgca
ggattcgctacgatacaaccgcttctcgaagcgatgctgagctcgcggcggtacggatcg
ctaccgcgggaaaccgctgcgctttcactacgcctcctggccacgcgatggagtggggat
ctgcacccacatctaccaagttttgtgcagttcgtgctgcgccttgtttcagatccggat
ccgctcgtgaaacttgctggtgcacgtgctgtggcggcgctagctacggtggtgtctgcg
caagattccgcctccctggaggcgctgcgtgcacccatttgggacggcgtgcgtgcctat
tatgatcgaacgttggtggcgtttctctcagcggcagctgcgctgattcgctgcatgcca
ttggaggaacgcgcctttcatgcagcggcgcttttggcgccaacgatgcgtgcgatgcgc
acacactgcgctgttggtgtccttgaacagctgcttgttcacggcagtatacccgaagac
accttagcatcgaacgttttaggagagtttttggagatgtgtttcctgcgaccggagcga
agcgtctgtcgggcggcagcacgcagcgctgttcgaaggcggcttgctcgagtggcggca
cttatgtctgagcgggttggtgtatctgctgtgttgacggatgatgttgtttgttgcttg
gacgcggcggatgctgatcccgtgattgtcctattgttactggaaacggtgcggcaggtg
ctgcggagcgggcgtggccagcttgatctgaagccggcttctgagcgccgtctgatccag
ggtctacttcagtgcttgcggcgttctgcgccgactccctaccgccacgtgagctcgatt
ctgtggatgttgggtgcccgcgtcgtaccgtggtccgagacgctggtgcatttgctagtg
gctcgtttacagagtgcagcggctgcgactcgtgcagaggctgcacgactcgtctgcaga
ctggtgcccatgtgggtgcaactcggagatgcggatgcactcgctcgtctgggtatcgtc
ctcgcagagtgctacaatgaagtgtatccggaggcgttggcggccatgttagaagcactg
ggtgccattttggaccatttgactgcctacctgccgccgtcggaggttccattcgctgag
attctctcccgattggttcctgtcttacgaaatccggccgaagaggtacaagctgcggcg
gctctggttgtgatggtgcttgctcgtcatgctggctccagtattccagactcggaatgg
ctgcgtgttgcccaggagcttcgaagagcgctcggtgcccagcggcgccaagtgcgctac
cgggcggttgatgcatacggtgccgtcgctcgcgtgcttggccaaattgactcgctaggg
caaaccttgcttgctgcacttcgacaaaccgatcgctcgatgcgtgtcgctgcatccgtt
gcgctcgccatagcgaccttacagagccccgaccggatgctagcgcagctgctggatgct
tacatcggcgagcaggacaagaatgttcaaactgggatcctgaaatccgtcgggttctac
tgcgcattttccggtgatgcgaatcggtcgtggaatgctctccaggtgtatgcggtgacg
cgtttgttggaatcggcgctgattgaacgctacgatacgcaccgacagttggcttgcgag
gcgacgggacactttgctctggcgctggtggggcacggctacgaggaggcgatgctccat
ctgctgaaccacgtctggccggcgtacgtagcccaggtatcttcgccggaagacacgcac
ctagaacatgcggtagcgttttcggtgcaagcattgggaatagcgctgggcgcaggagtg
ctgaatgcctacctgacgcaagggctattccacccggcgcaagctgtgcgcaaactgtat
tggacggtgcagcgatggcagatggagtattttggcggctggagtggcgtctccagttgt
ttgtttggacttaaaggaccggagtggccggccgcaactctgtaa

DBGET integrated database retrieval system