KEGG   Cyanidioschyzon merolae: CYME_CMT635C
Entry
CYME_CMT635C      CDS       T00175                                 
Name
(RefSeq) hypothetical protein
  KO
K12589  exosome complex component RRP42
Organism
cme  Cyanidioschyzon merolae
Pathway
cme03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cme00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CYME_CMT635C
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cme03019]
    CYME_CMT635C
Messenger RNA biogenesis [BR:cme03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     CYME_CMT635C
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     CYME_CMT635C
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 16997979
NCBI-ProteinID: XP_005539565
UniProt: M1VD34
LinkDB
Position
20:complement(1613001..1613975)
AA seq 324 aa
MPTELSRTEKKSLIWLFKEHGLRVDGRSALRSRSVSVAVDVLPSTAGSSRVFVGRTNDVL
VGINLELRQYNLPAHAEDDAKRGSIAFSVEFCGVASPEFQGRSTEVLEAELVSFLDTAYA
ASPEFLADLFCREQRLASDPGTLRVCCWDVYVDVLVLGASGGNILDAVTYAVRAALATTV
VPSVYWQDSESGGSWELDDRAEYCALLNASNAPLSASGAFIPPLVRDSRTEHDQVTLVAP
RWFIIDPCAEEETLAGCFLSVASDSAQHLRAIWKRGSLPVEPDVVLDAAQQCIRDSAYAC
QEMDHFISELVATEESESVDDVPG
NT seq 975 nt   +upstreamnt  +downstreamnt
atgccgaccgaactgtctagaactgagaagaaaagtcttatatggttgttcaaggagcat
ggtctaagagttgacggacgcagtgcgcttcgatcgcgctctgtgagcgttgctgttgat
gtgctgccctccacagcgggctccagtcgagtgttcgtcggtcggactaacgacgtactc
gtcggtataaacctggagctgaggcaatacaatttgccagctcatgcggaagatgacgcc
aaacgtggctcgatcgcgttttctgtggagttctgcggagtcgcaagtcccgagtttcaa
ggacgctccactgaggtgcttgaggcagagctcgtctcgtttctagatactgcctacgca
gcttctcctgagtttttagcagacctcttctgcagggaacagcggctagcttcggatccg
ggtacgctccgggtgtgctgctgggacgtgtacgtggacgtactggtgctcggggcctcg
gggggtaacattctcgatgccgtgacctacgctgtgagggcagcactggcaacaaccgtt
gtcccgtccgtgtattggcaggacagtgaaagcggtggaagctgggaactggatgaccgg
gcagagtactgcgctctcctgaatgcctcgaacgctccgctgagcgctagtggggctttt
attccgcctctggtacgcgactcgcgcacagagcatgatcaggtgactttggtcgccccg
cggtggtttataatcgatccgtgcgctgaggaggagacgctggcgggctgtttcctttct
gtggccagtgacagcgcgcagcacctgcgagcgatatggaagcgcggctccttgcccgtg
gagcccgacgtggtactcgacgccgcgcagcagtgcataagagatagcgcctacgcctgt
caggagatggatcatttcatcagcgaacttgtggcaacagaagaatcagaatctgtagat
gatgtgccaggatag

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