Caldinitratiruptor microaerophilus: caldi_33010
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Entry
caldi_33010 CDS
T08566
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cmic
Caldinitratiruptor microaerophilus
Pathway
cmic03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cmic00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
caldi_33010 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmic03021
]
caldi_33010 (rpoB)
03400 DNA repair and recombination proteins [BR:
cmic03400
]
caldi_33010 (rpoB)
Enzymes [BR:
cmic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
caldi_33010 (rpoB)
Transcription machinery [BR:
cmic03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
caldi_33010 (rpoB)
DNA repair and recombination proteins [BR:
cmic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
caldi_33010 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BDG62211
UniProt:
A0AA35G9L2
LinkDB
All DBs
Position
3373880..3377614
Genome browser
AA seq
1244 aa
AA seq
DB search
MGRTLKAGMRERYSFGRIDEVLELPNLIELQQNSYQWFLREGLQDIFRDISPITDFTGNL
VLEFLDYSLGEPKYSIEECKERDVTYAAPLRVRVRLVNKETGEVKEQEVFLGDFPLMTAN
GTFIINGAERVIVSQLVRSPGVYYSEQVDASGKKLFFATVIPNRGAWLEFETDANDLITV
RVDRTRKLPATVLLRALGYSSDHQVLEAVGEHELVRRTLEKDGTDSEDEALIEIYKRLRP
GEPPAVDNARQLLDSLFFEPKRYDLAPVGRYKLNKKLALRRRIAGTNAAERVVDPATGEV
LAEPGQPIDRKLAERIEQAGIGRITVQLKDGSTVRVVSNGQPPITQKTITREDIVAIVNY
MCTLAKGLGSVDDIDHLGNRRLRSVGELLQNQFRIGLARMERVVKERMTIQDVEAITPQA
LINIRPVVAAVKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRDVH
HSHYGRMCPIETPEGPNIGLIGALATYARVNEYGFIETPYRKVDRENKRILDEVVYLTAD
EEDEAVIAEANTPIKDGWFASDRVVCRYRSDFVEVPPEQVDYMDVSPKQIVSVATALIPF
LENDDASRALMGSNMQRQAVPLLRPDAPLVGTGLEFRAAYDSGVLVVAEGPGVVERVSGS
EIVVRQDDGTVRRYKLTKFQRSNQGTCLNQRPIVRKGQRVEKGDILADGPSTDGGELALG
RNLLVAYMCWEGYNYEDAIVISERAVTEDLLTSIHIEEHECEARDTKLGPEEITRDIPNV
GEDVLRDLDERGIIRIGAEVRPGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTS
LRVPHGESGIVVDVKVFTREQGDELPPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVIS
KILPVEDMPFLPDGTPVDIVLSPLGVPSRMNIGQILETHLGWAAQKLGMYVATPVFDGAD
ENEIKELLRKAGLPESGKIPLRDGRTGELFDSEVTVGVAYMLKLAHLVDDKIHARSTGPY
SLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQELLTVKSDDVVGRVKTYEAIVKG
ENVPEPGVPESFKVLIKELQSLCLDVRVLSEDNQEIEIREVDEDFHDGLRDLDIPVPDEY
VERPVPARRPAGDEEEEEAEDAEEDAAILAGGDMGETLDLEDALPDADGGEEEDLPVRAG
RTGRAGRLGAGARGGTGAGVDGGLDDLDGEGPEGGPDGDLDDEE
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atgggccggacgctgaaggcgggcatgcgggagcgttacagcttcggccggatcgacgag
gtcctggagctgccgaacctcatcgaactccagcagaactcgtatcagtggttcctccgc
gaagggctgcaggacatcttccgggacatctcccccatcacggatttcaccggcaacctg
gtcctcgagttcctggactacagcctgggtgaaccgaagtacagcatcgaggagtgcaag
gagcgggacgtcacctacgccgccccgctgcgggtacgggtacggctggtcaacaaggag
accggcgaggtcaaggagcaggaggtcttcctgggggacttccccctgatgaccgcgaac
ggaaccttcatcatcaacggggccgagcgggtcatcgtcagccagctcgtgcggtctcct
ggtgtctattatagcgaacaggtcgacgcatcgggcaagaagctctttttcgccaccgtg
atcccgaaccggggggcctggctcgagttcgagaccgatgccaacgacctcatcaccgtg
cgggtggaccgcacccgcaagctgccggccacggtgctcctgcgggcgctcggctactcg
agcgaccaccaggtcctcgaagccgtgggcgaacacgagctcgtgcgccgcaccctggag
aaggacgggacggactcggaggacgaggcgctgatcgagatctacaagcgcctgcgcccg
ggcgagccgccggcggtcgacaacgcccggcagctgctcgactccctcttcttcgagccc
aagcggtacgacctggcccccgtgggccggtacaagctgaacaagaagctggcgctgcgg
cggcgcatcgccggcaccaacgcggccgagcgggtggtcgaccccgccaccggcgaggtt
ctggccgaacccggtcagcccatcgaccggaagctcgccgagcggatcgagcaggccggc
atcggccggatcaccgtccagctgaaggacggctcgacggtgcgggtggtctcgaacggc
cagccgcccatcacccagaagacgatcacgcgggaagacatcgtcgccatcgtcaactac
atgtgcacgctggcgaagggcctggggtcggtggacgacatcgaccacctgggcaaccgc
cgcctgcgctcggtgggcgagttgctgcagaaccagttccgcatcggcctggcccgcatg
gagcgggtggtcaaggagcgcatgaccatccaggacgtggaggccatcacgccgcaggcg
ctcatcaacatccggccggtggtggcggcggtcaaggagttcttcggctcctcgcagctc
tcccagttcatggaccagacgaacccgctggcggaactgacccacaagcggcgcctctcc
gccctgggccccgggggcctcagccgggagcgggccgggttcgaggtccgggacgtgcac
cacagccactacgggcggatgtgcccgatcgagacgccggaaggcccgaacatcggcctg
atcggcgccctggcaacgtacgcccgcgtgaacgagtacggcttcatcgagacgccgtac
cggaaggtcgaccgcgagaacaagcggatcctcgacgaggtggtctacctcacggccgac
gaggaggacgaggccgtgatcgccgaggcgaacacgccgatcaaggacggctggttcgcc
agcgaccgggtggtgtgccgctaccggagcgacttcgtcgaggtgccgcccgagcaggtc
gactacatggacgtgtcgcccaagcagatcgtctcggtggcgaccgccctcatcccgttc
ctcgagaacgacgacgcctcccgggccctgatgggctcgaacatgcagcgccaggccgtg
ccgctcctgcggcccgacgccccgctggtcgggaccgggctcgagttccgcgccgcgtac
gactcgggcgtgctggtcgtcgccgagggtcccggcgtggtcgagcgggtgtccggctcc
gagatcgtcgtccgccaggacgacggcaccgtgcggcgttacaagctcacgaagttccag
cgctcgaaccagggcacgtgcctcaaccagcggccgatcgtccgcaagggccagcgcgtg
gagaagggcgacatcctggccgacgggccttcgaccgacggcggcgagctcgccctgggc
cggaacctcctggtcgcctacatgtgctgggaaggctacaactacgaggacgccatcgtc
atcagcgagcgggcggtcacggaggacctcctcacctcgatccacatcgaggagcacgag
tgcgaggcccgcgacaccaagctcgggccggaggagatcacccgggacatccccaacgtc
ggcgaggacgtcctgcgcgacctcgacgagcggggcatcatccgcatcggcgccgaggtg
cggcccggcgacatcctggtcggcaaggtcacccccaagggcgagaccgagctcacggcc
gaggagcggctcctgcgggcgatcttcggcgagaaggcccgggaggtccgggacacctcc
ctgcgggtgccgcacggggagagcggcatcgtcgtcgacgtgaaggtcttcacccgcgag
cagggcgacgagctgcctccgggcgtgaaccagctggtgcgcgtctacatcgcccagaag
cggaagatctccgagggcgacaagatggcgggccgccacgggaacaagggcgtgatctcc
aagatcctgccggtcgaggacatgccgttcctgccggacgggacgccggtcgacatcgtc
ctgagcccgctgggcgtgccttcccggatgaacatcggccagatcctggaaacccacctc
ggctgggcggcgcagaagctcggcatgtacgtggccacgccggtcttcgacggggccgac
gagaacgagatcaaggagctgctgcgcaaggccgggctgccggagagcggcaagatcccg
ctgcgggacggccgcaccggcgagctcttcgacagcgaggtcacggtgggcgtggcgtac
atgctgaagctcgcccacctggtcgacgacaagattcacgcccgctccacgggcccctac
agcctggtcacccagcagccgctgggcggcaaggcgcagttcggcggccagcgcttcggg
gagatggaggtgtgggcgctcgaggcctacggcgccgcgtacaccctgcaggagctgctg
accgtcaagtcggacgacgtggtcggtcgcgtgaagacgtacgaggcgatcgtgaagggc
gagaacgtgccggagccgggcgtgcccgaatccttcaaggtcctgatcaaggagctccag
tcgctctgcctcgacgtgcgggtgctgtcggaggacaaccaggagatcgagatccgggag
gtcgacgaggacttccacgacgggctgcgtgacctcgacatcccggtgcccgacgagtac
gtcgagcgcccggtgccggcccgccgcccggccggtgacgaggaggaagaggaggccgag
gacgcggaggaggacgccgcgatcctggccggcggcgacatgggcgagacgctcgacctg
gaggacgccttgcccgacgccgacggcggtgaggaagaggatctcccggtccgtgccggc
cgcaccggccgggccgggcggctgggcgccggcgcccggggcggtaccggggccggcgtg
gacggcggcctcgacgatctggacggcgagggcccggagggcgggcccgacggagacctc
gacgacgaggagtaa
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