Cronobacter malonaticus LMG 23826: AFK66_018440
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Entry
AFK66_018440 CDS
T04062
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cmj
Cronobacter malonaticus LMG 23826
Pathway
cmj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cmj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AFK66_018440 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmj03021
]
AFK66_018440 (rpoB)
03400 DNA repair and recombination proteins [BR:
cmj03400
]
AFK66_018440 (rpoB)
Enzymes [BR:
cmj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AFK66_018440 (rpoB)
Transcription machinery [BR:
cmj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AFK66_018440 (rpoB)
DNA repair and recombination proteins [BR:
cmj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AFK66_018440 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ALX80236
LinkDB
All DBs
Position
complement(3808093..3812121)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALDYTTEQILDLFFEKVVFEIRDNKLQME
LIPERLRGETASFDIEANGKIYVEKGRRITARHIRQLEKDEIKHIEVPVEYIAGKVAAKD
YVDASTGELICPANMELSLDLLAKLSQAGHKRIETLFTNDLDHGPYISETVRVDPTTDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKADIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT
DEIHYLSAIEEGNYVIAQANTNLTEEGRFADDLVTCRSKGESSLFSADQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLNEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIRAVLIAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKRQEEVAK
LREFIQKAYDLGQDVRQKVDLNTFSDDEVLRLAENLRKGMPLATPVFDGAKEAEIKELLQ
LGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttctggatgttccctatctcctttctatccagcttgactcgttccagaaatttatcgag
caagatcctgagggtcagtacggcctggaagcagctttccgctccgtattcccgatccag
agctacagcggcaattcggaactgcagtacgtcagctaccgtcttggcgaaccggttttt
gatgttaaagaatgccaaatccgtggcgtgacctattcggcaccgctgcgcgttaagctg
cgtctggtgatctacgagcgcgaagcgccggaaggcaccgttaaagacatcaaagagcaa
gaagtttacatgggcgaaatcccgctcatgaccgataacggtacctttgtcatcaacggt
actgagcgtgttatcgtttctcagctgcaccgtagcccgggcgtgttctttgacagcgac
aagggtaaaacccactcctctggtaaggtgctgtataacgcacgcatcattccttaccgt
ggctcctggctggacttcgaattcgatccgaaagacaacctgtttgtccgtatcgaccgc
cgtcgtaagctgccggcaactatcatcctgcgcgcgctggattacaccactgagcagatc
cttgacctgttcttcgaaaaagtggttttcgaaatccgcgacaacaagctgcagatggag
ctgattccggagcgtctgcgtggtgaaaccgcgtcctttgatatcgaagcaaacggcaaa
atctacgtagaaaaaggccgtcgtatcactgcgcgtcatattcgccagctcgaaaaagac
gaaatcaaacacatcgaagttccggttgaatacatcgccggtaaagtcgctgcgaaagat
tatgtggatgcttccactggcgagctgatttgcccggccaacatggaactgtctctggat
ctgctggcgaaactgagccaggctggtcacaaacgtatcgagacgctgttcaccaacgac
ctcgaccacggcccgtatatttctgagactgtccgcgtcgacccgaccaccgatcgcctg
agcgcgctggttgagatctaccgcatgatgcgtcctggcgagccgccgacgcgtgaagcg
gcagaaagcctgtttgagaacctgttcttctctgaagatcgttacgatctgtctgcggtt
ggccgcatgaagttcaaccgttctctgctgcgcgacgagatcgaaggttccggtatcctg
agcaaagccgacatcatcgacgtgatgaagaagctcatcgatatccgtaacggtaaaggc
gaagtggacgatatcgaccacctcggcaaccgtcgtatccgttccgttggcgaaatggct
gaaaaccagttccgcgttggcctggtgcgtgtagaacgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgccgcaggatatgatcaacgccaagcctatctccgcg
gcggtgaaagagttcttcggttcaagccagctttctcagtttatggaccagaacaacccg
ctgtctgagatcacgcacaagcgtcgtatctctgctctcggcccgggcggtctgacgcgt
gagcgcgcaggcttcgaagttcgagacgtacacccgacccactacggtcgcgtatgtcct
atcgaaacgccggaaggtccgaacatcggtctgatcaactccctgtccgtgtacgcacag
actaacgagtatggcttccttgagacgccgtaccgtaaagtgaccgacggtgtggtgact
gatgaaattcattacctctccgctatcgaagaaggtaactacgttatcgctcaggcgaac
accaacctgaccgaagaaggccgcttcgccgatgatttggtcacctgccgcagcaaaggc
gaatccagcctcttcagcgcagaccaggttgactatatggacgtttccacccagcaggtg
gtttctgtcggtgcgtccctgatcccgttccttgagcacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggttccgaccctgcgcgctgataagccgctggta
ggtaccggtatggaacgtgctgttgccgttgactccggtgtaaccgccgtggccaaacgt
ggcggtaccgttcagtacgtggatgcgtcccgtatcgttatcaaagttaacgaagacgag
atgtatccgggcgaagcaggtatcgacatctataacctgactaaatacacccgttctaac
cagaacacctgcatcaaccagatgccttgtgtgtctctgaatgaaccggttgagcgcggc
gacgtgctggcagacggtccgtccaccgacctcggtgaactggcgctcggtcagaacatg
cgcgtagcgttcatgccgtggaacggctacaacttcgaagactccatcctcgtttccgag
cgtgttgtccaggaagaccgtttcaccacgattcacatccaggaactggcgtgcgtatct
cgtgatactaagctggggccggaagagatcaccgctgacatcccgaacgtgggtgaagct
gcgctctctaaactggatgaatccggtatcgtctacatcggcgcggaagtgaccggcggc
gacattctggtgggcaaggtaacgccgaaaggtgaaacccagctgacgccggaagagaaa
ctgctgcgtgctatcttcggtgagaaagcgtctgacgttaaagactcctctctgcgtgtg
ccgaacggcgtttccggtacggttatcgacgttcaggtctttacccgcgatggcgtggaa
aaagacaaacgtgcgctggaaatcgaagaaatgcagctcaaacaggccaaaaaagacctg
tctgaagaactgcagatcctcgaagccggtctgttcagccgtattcgcgctgtgctgatc
gcaggcggcgttgaagctgagaagctcgacaaactgccgcgcgaccgctggctggaactc
ggcctgaccgacgaagagaaacagaatcagctggaacagctggctgagcagtacgacgaa
ctgaagcacgagtttgagaagaaactcgaagcgaaacgccgcaaaatcacccagggtgac
gatctggcgccgggcgtgctgaagatcgttaaggtgtatctggccgttaaacgtcagatc
cagccgggcgataagatggcaggccgccacggtaacaaaggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacggcacgccggtagacatcgtactgaacccg
ctgggcgtaccgtctcgtatgaacatcggtcagatcctggaaactcacctgggtatggcg
gcgaaaggtatcggcgataagatcaacgccatgctgaagcgtcaggaagaagtcgcgaaa
ctgcgcgaattcattcagaaagcttacgacctcggccaggatgttcgtcagaaagttgac
ctgaacaccttcagcgatgacgaagtactgcgtctggctgaaaacctgcgtaaaggtatg
ccgcttgccacgccggtattcgacggcgcgaaagaagctgaaattaaagagctgctgcag
ctgggcgacctgccgacttccggtcagatcaccctgttcgatggccgtactggtgaacag
ttcgagcgtccggtaaccgtaggttacatgtacatgctgaaactgaaccacctggttgac
gacaagatgcacgctcgttccaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggcgcagttcggtggccagcgcttcggtgagatggaagtgtgggcgctggaagct
tacggcgccgcctacaccctgcaggaaatgcttaccgttaagtctgatgacgtgaacggc
cgtaccaagatgtacaagaacatcgtggatggcaaccatcagatggaaccgggcatgccg
gaatcgttcaacgtactgttgaaagagattcgctcgctgggcatcaacatcgaactggaa
gacgagtaa
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