Callorhinchus milii (elephant shark): 103176362
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Entry
103176362 CDS
T03088
Symbol
scn1laa
Name
(RefSeq) LOW QUALITY PROTEIN: sodium channel, voltage-gated, type I-like, alpha
KO
K04834
voltage-gated sodium channel type II alpha
Organism
cmk
Callorhinchus milii (elephant shark)
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cmk04040
]
103176362 (scn1laa)
Ion channels [BR:
cmk04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
103176362 (scn1laa)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
ATP-synt_B
GPHH
PKD_channel
IQ
Motif
Other DBs
NCBI-GeneID:
103176362
NCBI-ProteinID:
XP_007888018
LinkDB
All DBs
Position
Unknown
AA seq
1870 aa
AA seq
DB search
MFTILTNCVFMTLSNPPEWTKNVEYTFTGIYTFESLIKILARGFCIDSFTFLRDPWNWLD
FSVILMAYLTAFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILT
VFCLSVFALIGLQLFMGNLRNKCIKWPPLNFNITNSSLVLNETMANDTENIFDFDEYVQD
KTNYYILEGAKDALLCGNGTDAGKCPESFTCMKGGRNPNYGYTSFDSFSWAFLSLFRLMT
QDCWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLVNLILAVVAMAYDEQNQATLEEAEQK
EAEFQLMLEQLKKQQEEAQLAAAAAAAESEDRSGADDLYDMSQSSSGMSKLSSKSAKERR
NHRKKRKQNELAGGGEKGDNEKMHKSESDDSGGRGSVFRFPTDCSRAKSSSSPRQSLLSF
RGSLFSPRRNSRSSIFSFKGRMKDVGSETDFADDEHSTFEDNESRRSSFFNPYRQGERRG
SNISQASPSPRNLPMVSANGKMHSTVDCNGVVSLLGGPSAPILPTVLLLPEVIIDKPATD
DNAANMEMELKKRRTGSHLIATDLLEDPVLKQRALSVASVLTNTMEELEESRQKCPPCWY
KFANTYLIWDCHPRWLKLKEVVHLVVMDPLVDLAITICIVLNTLFMAMEHYPMTENFQNV
LSYGNLVFTGIFTAEMIFKIIALQPYYYFQEGWNIFDSIIVSLSLMELGLADVEGLSVLR
SFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKNYKEC
VCKITDDCKLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVADQTMCLTVFMMVMVIG
NLVVLNLFLALLLSSFSADNLAASDDDSEMNNLQIAVGRIQKGIDCIKRNVRELFQKPCV
RRKVTEDVKPLDDLQSKKGSNVSNHTTVEISKEGNYHKDGNGTTSGIGSSVTADKYDVSD
YMSFIHNPSLTVTVPIAXRESDFENLNTEDFTSESDLEESKEQTAETSSSEGSTVDISPP
GEGEKQEEIPEESMEPEACFTDGCVRKYPCCYVNIEEERGKMWWNLRKTCFRIVEHNWFE
SFIIFMILLSSGALAFEDIYIEKHKTIKSVLEYADKIFTYIFILEMLLKWVAYGFVKYFT
NAWCWLDFLIVDVSLVSFTANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALL
GAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYYHCINTTDESMIAIDIVNNITDCLKMIE
FNETARWKNVKINFDNVGAGYLALLQVATFKGWMEIMYAAVDSRGLELQPKYEANQYMYF
YFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQK
PIPRPMNEIQGMVFDLVTKQVFDILIMILICLNMVTMMVETDLQSKETDNILYLINVIFI
VLFTTECVLKLIALRYYYFTLGWNVFDFVVVILSVIGMFLADLIDKYFVSPTLFRVIRLA
RIGRILRLIKSAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFSYVKRESGI
DDLFNFETFGNSMICLFQITTSAGWDALLAPNLNSGPPDCDPQKHHPGSSVKGDCGNPPV
AIFFFVSYIIISFLIVINMYIAIILENFSVAMEESAEPLSEDDFEMFYEVWEKFDSDATQ
FMEYGKLHDFADALEPPLRVAKPNKVQLIAMDLPMVSGNRIHCLDILFAFTKRVLGEGGE
MDALRQQMEDRFMASNPSKVSYEPITTTLRRKQEAVSATIIQKAFRSYLIRRTVKQASFM
FKEKGKGGELLPGKEEMVIDKFNENSTTEKTDVTPSTTSPPSYDSVTKPENDREEKEKDD
RIRYVREYKK
NT seq
5613 nt
NT seq
+upstream
nt +downstream
nt
atgttcaccattttgaccaactgtgtgtttatgactctgagtaaccctccagaatggaca
aagaatgtagagtacacgttcactggtatttacacatttgaatcgcttataaaaattctt
gcaaggggcttctgtatagattctttcactttccttcgagacccatggaactggctggac
ttcagtgttattctcatggcatatctgacagcatttgtggacctgggcaatgtctcagcc
ttgagaacattcagagttctccgagcactgaaaacaatttcagttattccaggcttgaag
accatcgtgggggccctgatccagtcggtgaagaagctctcggatgtaatgatactgact
gttttttgtctgagcgtatttgcactaattggcctacaactgttcatgggcaatttaagg
aataaatgtataaagtggccaccccttaacttcaatataactaacagctcacttgtcctg
aatgaaaccatggcaaatgacacggagaacatatttgactttgacgagtacgtccaggac
aagacaaattactatatcttggaaggagccaaggatgcattactttgtggtaatggtact
gatgctggcaaatgccccgagagctttacgtgtatgaaaggtggaaggaatccaaattac
ggttataccagctttgacagctttagctgggcattcttatcattgttccgattgatgact
caggactgctgggaaaacctttaccaactgaccctgcgagctgctggcaaaacgtacatg
atattttttgtgctggtcatattcctgggatcgttctacttggtgaatctgatcctggcc
gtggtagccatggcatatgacgagcagaaccaggccacccttgaggaagctgaacagaaa
gaggcggaatttcaactgatgctcgaacaactgaaaaagcaacaggaagaagctcagctt
gcggcagcggcagctgcagctgagtcggaggacaggagcggagcagatgacctgtatgac
atgtcgcagagttcctccggcatgtcaaagctgagctcgaagagcgccaaggagagacgg
aaccacaggaagaaacgcaagcagaacgagctggccggaggtggggagaaaggggacaat
gagaagatgcacaaatcggaatcggacgacagtgggggaagagggagtgtctttcgattt
cccacggattgcagccgtgcaaagagcagttcctccccacgccagtcgctgctaagcttc
cgaggttctctcttttccccccgacgcaacagcagaagcagcatcttcagtttcaaaggc
cggatgaaggatgtgggctcggaaaccgactttgccgatgatgagcacagcaccttcgaa
gacaatgagagcaggagaagctcgttctttaacccttacaggcagggcgagaggagaggt
agcaacattagtcaggccagtccatctcccaggaacctgcccatggtgtcagccaacgga
aagatgcacagcacagtggactgcaatggggtggtctcgctgcttggaggaccttccgct
ccaatcttacccacagtactccttctgcccgaggtgataatagataagccagctactgat
gataatgccgccaacatggaaatggagcttaagaagagaaggactgggtctcatctaata
gccactgatttgcttgaagatccagtgctaaagcagagagcgctaagtgtagcaagtgtt
ctgacaaacacaatggaagaacttgaagaatctcgacagaaatgccccccttgctggtat
aaattcgccaacacgtacttgatctgggactgccatccgcggtggttgaaactgaaggaa
gttgtacacttggttgtgatggatccattggtggaccttgctattactatctgcattgtg
ctgaacaccctcttcatggccatggagcattacccgatgacggaaaactttcaaaatgtg
ctttcgtatggaaacttggtctttactggaatctttactgctgaaatgattttcaaaatc
atagccttgcagccttattattacttccaagaagggtggaacatatttgacagcattata
gtgagtctcagcttaatggagctcggtctcgctgacgtggagggattgtcagtattgagg
tcttttcgattgctgcgagtgtttaaattggcaaagtcgtggcccacactaaacatgctg
atcaagatcatcggtaactcagtgggcgctttgggtaacttgactttggtgttagccatc
attgtcttcatctttgctgtagtgggcatgcagctatttggcaaaaactacaaggagtgt
gtctgcaaaattacagacgattgtaagctacctcgctggcacatgcacgatttctttcac
tccttcctgatcgtgttccgtgtgctgtgtggagagtggattgagacaatgtgggactgc
atggaggtcgctgatcagaccatgtgcctcactgtcttcatgatggtcatggtaatcggc
aatcttgtggtcctgaacctgtttctggccctgttactgagctcgttcagtgccgataat
ctcgctgccagcgatgatgacagtgagatgaacaatttacagattgcggtggggaggata
cagaaaggcatcgattgcatcaagagaaatgtaagagaactgtttcagaaaccctgcgtc
aggaggaaagtcaccgaagatgtcaaaccactcgatgacctacagagcaagaaaggcagt
aatgtctccaatcacacaacagttgagattagtaaagagggtaactatcataaagatggc
aatggaaccaccagtgggataggcagcagtgtaacagcagataaatacgatgtaagtgac
tacatgtcctttattcacaacccaagtctcactgtaacagtgccgatagcanatagggag
tcggactttgagaatctaaacacggaagatttcaccagtgaatccgatctggaggaaagc
aaagagcaaacagctgaaaccagctcttcagagggaagcacagttgacatcagtccacct
ggcgagggtgagaaacaggaggaaatcccagaggaatccatggagcccgaagcctgtttc
actgatggctgtgtacggaaatatccatgctgctatgtcaacatagaagaggaacgtggc
aagatgtggtggaacttaagaaaaacctgctttaggatagtggaacacaattggtttgag
tcgttcattatcttcatgattcttctcagcagtggtgccttggcttttgaagatatttac
attgaaaagcacaaaaccatcaagtcagtcctggaatacgctgataaaatcttcacttac
atcttcattctggagatgcttctgaagtgggttgcctatggttttgtgaagtatttcacc
aatgcatggtgttggctggacttcctcattgttgatgtctcattagtcagttttacagct
aatgccttgggctactcagaactaggtgccattaagtctcttaggacactaagagctctg
agacctctaagggccttgtcacgatttgaaggaatgagggtggtggtcaatgctctcctt
ggagcgatcccttccatcatgaacgtgctgcttgtctgcctgatattctggctgattttc
agcattatgggtgtgaacctctttgctgggaaatactaccactgcatcaacaccaccgat
gaaagcatgatcgctattgacattgtgaataacataaccgactgcttaaaaatgattgaa
ttcaacgaaaccgccaggtggaaaaacgtgaagatcaactttgacaatgttggggctggc
tatctcgcccttctacaagtggcgacattcaaaggatggatggagattatgtatgctgct
gtggattcccgtggtctggaactgcagcctaaatatgaagcgaaccagtatatgtatttt
tattttgtgatcttcatcatcttcggatcgttcttcaccttgaacctatttattggtgtc
atcatcgataacttcaaccagcagaaaaaaaagtttggaggtcaggacattttcatgact
gaagagcagaagaagtattacaatgcaatgaaaaagctgggctccaagaaaccacagaag
ccgattcctagacctatgaacgaaatccaagggatggtgtttgacttggtgacaaagcaa
gtctttgatatattgatcatgattctcatttgccttaacatggtcaccatgatggtggag
accgatctccagagtaaagaaacggataacatcttatatttgatcaacgttatcttcatt
gtcctcttcaccacggagtgcgtgcttaagctcatagcacttcgctattattactttaca
ttaggctggaatgtatttgactttgtggtcgtcatactttccgtcataggcatgttctta
gctgacctcattgataaatactttgtgtcgccgacattattcagagttatcagacttgcc
agaattggccggatcctccgtttaatcaagagcgcgaaaggaatccgtaccttactgttt
gccttgatgatgtcccttcctgccttgttcaacatcggactcttgctgtttctggtcatg
ttcatttacgccatatttggaatgtccaacttctcttacgtgaagagggagtccggaatc
gatgacttgttcaactttgaaaccttcggaaacagtatgatttgcctgtttcagatcacc
acctcagcaggctgggacgctttgctggctccaaacctgaacagcgggcctcccgattgt
gacccccaaaaacatcaccccggcagttccgtcaaaggagactgcggaaacccgccggtg
gccattttcttcttcgtcagttacatcatcatatccttcttgatcgtcataaacatgtac
atcgccatcattttggagaacttcagtgttgcgatggaagagagcgctgagcctctgagt
gaggacgactttgagatgttttatgaagtgtgggagaagttcgattcggatgcaacccag
ttcatggagtacggtaaattgcacgattttgctgatgccttggagccacctctccgtgta
gcgaaaccgaacaaggtacagcttatagccatggacctgcccatggtgagtgggaataga
atccattgcctcgacatcttgtttgcattcaccaaacgcgtgctgggtgagggtggggag
atggatgcccttcgacagcaaatggaagatcgattcatggcatccaacccttctaaggta
tcttacgagccaattacaactactctacgtcgcaaacaggaagctgtgtcggccaccata
atccagaaagcttttaggagctatctgatacggcgaacagtcaaacaagcctcttttatg
ttcaaggagaaaggcaaagggggagagcttctgccgggcaaagaagaaatggtgatcgat
aaatttaacgaaaactccaccacagaaaaaactgatgtaactccttccaccacctctccg
ccatcttacgatagcgtaaccaaaccggaaaatgacagagaggagaaagaaaaagatgac
agaatcagatatgtcagggagtataaaaagtaa
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integrated database retrieval system
