KEGG   Callorhinchus milii (elephant shark): 103178581
Entry
103178581         CDS       T03088                                 
Symbol
cul4b
Name
(RefSeq) LOW QUALITY PROTEIN: cullin-4B
  KO
K10609  cullin 4
Organism
cmk  Callorhinchus milii (elephant shark)
Pathway
cmk03420  Nucleotide excision repair
cmk04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:cmk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    103178581 (cul4b)
  09124 Replication and repair
   03420 Nucleotide excision repair
    103178581 (cul4b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cmk04121]
    103178581 (cul4b)
   03400 DNA repair and recombination proteins [BR:cmk03400]
    103178581 (cul4b)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cmk04147]
    103178581 (cul4b)
Ubiquitin system [BR:cmk04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Cullin
     103178581 (cul4b)
DNA repair and recombination proteins [BR:cmk03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      103178581 (cul4b)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      103178581 (cul4b)
Exosome [BR:cmk04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   103178581 (cul4b)
SSDB
Motif
Pfam: Cullin Cullin_Nedd8 SecA_SW
Other DBs
NCBI-GeneID: 103178581
NCBI-ProteinID: XP_042201600
LinkDB
Position
Unknown
AA seq 847 aa
MFRTGLPSPNSPQEVRQQADVGPRKRKLAEAEAGEFEPQPEAQLQHLPFARPAASSAAAA
AHHHHHLHHHHVPHKKVKFDDDSLDFIGLDAMAEEAAQRKSGCSVLTGVHANGLTKSSTF
ANSKPGTAKKLVIKNFADKPKLPDNYTNETWQKLKEAVEAIQNSTSIKYNLEELYQAVEN
LCSYKVSANLYKQLRQVCEDHIKAQIHQFREDSLDSVLFLKKIDKCWQDHCRQMIMIRSI
FLFLDRTYVLQNSMLPSIWDMGLELFRCHVISDRKVQNKTIDGILLLIERERNGEAIDRS
LLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQRLMQEREVPEYLHHVNKRLEEEAD
RVITYLDQSTQKPLIATVEKQLLGEHLPAILQKGLNSLLDENRIQDLCLLYQLFSRVRGG
VQVLLQHWIEYIKTFGSTIVINPEKDKTMVQELLDFKDKVDHVVDVCFLKNEKFVNAMKE
AFETFINKRPNKPAELIAKYVDSKLRAGNKEATDEELEKMLDKIMIIFRFIYGKDVFEAF
YKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFRDMELSKDIMIHFKQYT
QNQNIPGNLELTVNILTMGYWPTYVPMEVHLPLEMVKLQEVFKDFYLGKHSGRKLQWQST
LGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEEIKAATGIEDGELRRTLQSLA
CGKARVLAKTPKSKDVEDCDKFTCNDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDR
QYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADLKKRIESLIDRDYMERDKENT
NQYNYVA
NT seq 2544 nt   +upstreamnt  +downstreamnt
atgtttcgaacgggcctcccgtctccaaattcgccgcaggaggtgcgacagcaggccgat
gtcggcccgaggaagcgaaagttagccgaggcagaggcaggcgagttcgagccccagccc
gaagcccagctccagcaccttcccttcgccaggcccgccgcctcgtccgccgccgccgcc
gcccaccaccaccaccacctccaccaccaccacgtcccccacaagaaagtcaagttcgac
gacgactcgctggactttatcggactcgatgcgatggccgaggaggcggcccagaggaaa
agcggctgctccgtcctgacgggcgtgcacgccaacgggctgaccaaatcctccacgttc
gccaacagtaaaccggggacggccaaaaaactagtcataaaaaattttgcagataaacct
aaattgcctgataattacaccaacgagacttggcagaaactgaaagaagcggtggaagca
attcagaacagtacttcaatcaaatataatttggaggagctttatcaggctgttgagaat
ctctgctcctacaaagtatcagcaaatttatacaagcagttgaggcaggtctgtgaggat
cacatcaaagctcaaattcaccaattcagagaggattccttagatagtgtcctgtttcta
aagaagatagataaatgctggcaggatcactgcagacaaatgatcatgattaggagtatc
ttcttgtttctggatagaacttatgttctgcagaattcaatgcttccatccatttgggat
atgggtttggaattattcagatgccacgtaataagtgatcggaaggttcaaaataagact
attgatggtattcttctgttaattgagagggagcgaaatggtgaagctattgatcggagt
ttacttcgaagtctattaagtatgctctcagatttgcagatatatcaagattcatttgaa
caaaggtttttggaggagaccaatcgtctgtatgctgcagaaggtcaacgactaatgcag
gaacgagaggttccagagtatttgcaccatgttaataaacgtttagaggaagaagcagac
cgtgttatcacttacttagatcaaagcacgcagaaacctctaatagctactgtggaaaaa
caactcttaggtgaacatttaccagccattctccaaaaaggtttaaatagccttttggat
gaaaaccggatacaggacctttgtcttctctaccaactttttagtagggttcgaggtggg
gtacaagttcttttgcaacactggattgaatatataaagacctttggaagtacaatagta
attaatccagaaaaagataaaacaatggttcaagaactgttggatttcaaggataaagtg
gatcatgtagtcgatgtctgcttcctgaagaatgaaaaatttgtcaatgcaatgaaggaa
gcttttgaaaccttcataaacaaacgaccgaacaaaccagctgaattgatagccaaatat
gtggactccaaacttcgagccggaaacaaagaggctaccgatgaagaacttgaaaagatg
ctggacaaaattatgataatatttagattcatttatggaaaagacgtgtttgaggccttt
tacaagaaagacttggcaaagagactgctggtaggaaagagtgcgtcggtggatgcagaa
aaatctatgctttccaaactgaaacatgaatgtggagctgcattcaccagcaaactggaa
ggaatgttcagagacatggagctttcaaaagatattatgatccattttaaacagtacaca
cagaatcaaaacatcccaggcaaccttgagctgactgtgaacatacttacaatgggctac
tggcctacttatgtacctatggaggtccatttacccctggagatggtgaaacttcaggaa
gtgttcaaggatttttatctgggtaagcacagtggtagaaagctgcagtggcagtcaacg
ttggggcattgtgtgctgaaagcagaatttaaagagggtaagaaagagctccaggtgtca
cttttccaaactctggtattactcatgtttaacgaaggggaggagttcagcttggaagaa
ataaaagctgcaactggaatagaggacggagagttgagaagaactttgcaatctttggct
tgtggcaaagctcgtgtattagccaagactccaaaaagcaaagatgtcgaagactgtgat
aagttcacctgcaatgatgatttcaagcacaagttgttcaggatcaagattaatcagatc
cagatgaaagaaacggtggaagaacaggccagtaccactgagagagtattccaagacagg
cagtatcagattgatgctgccattgttcgaatcatgaaaatgagaaaaactctgagccac
aaccttcttgtatcagaagtgtacaatcagctgaagtttccagtcaagcccgctgatctg
aagaaaagaatagaatctttaattgacagggactacatggagagagacaaagaaaatacc
aaccagtacaactatgtggcatag

KEGG   Callorhinchus milii (elephant shark): 103185525
Entry
103185525         CDS       T03088                                 
Name
(RefSeq) cullin-4A isoform X1
  KO
K10609  cullin 4
Organism
cmk  Callorhinchus milii (elephant shark)
Pathway
cmk03420  Nucleotide excision repair
cmk04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:cmk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    103185525
  09124 Replication and repair
   03420 Nucleotide excision repair
    103185525
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cmk04121]
    103185525
   03400 DNA repair and recombination proteins [BR:cmk03400]
    103185525
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cmk04147]
    103185525
Ubiquitin system [BR:cmk04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Cullin
     103185525
DNA repair and recombination proteins [BR:cmk03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      103185525
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      103185525
Exosome [BR:cmk04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   103185525
SSDB
Motif
Pfam: Cullin Cullin_Nedd8 ADH_zinc_N
Other DBs
NCBI-GeneID: 103185525
NCBI-ProteinID: XP_007902268
LinkDB
Position
Unknown
AA seq 845 aa
MLRSGVTSESSPQEERQTAVVVAAHCSHPKKRVRSAESGEPESLSGSYHKAASSSSLSLS
PSPQQTPQHNHNHLKKRQRAEEPLECVVSDMAEEGQHKKANFSALVGHTNGLTKSATLTG
KPGTSKKLVIKNFKDKPKLPDNYTQDTWQKLHEAVGAIQRSTSIKYNLEELYQAVENLCS
YKVSPTLYKQLRQACEDHVKAQIHQFREDSLDSVLFLKKINKCWLDHCRQMIMIRSIFLF
LDRTYVLQSSMLPSIWDMGLELFRTHIINDRIVQSKTIDGILLLIERERTGEAVDRSLIR
SLLSMLCDLQVYQESFEHRFLEETNHLYAAEGQTLMQEREQVPEYLHHVNKRLEEESDRV
ITYLDQSTQKRLVACVEKQLLGEHLTAILQKGLDNLLDENRVADLTLLYQLFSRVKGGLQ
VLLQHWSEYIKTFGTTIVVNPEKDKTMVQELLDFKDKVDHVIDVCFIKNEKFINTMKEAF
ETFINKRPNKPAELIAKYVDSKLRAGNKEATDEELERMLDKIMIIFRFIHGKDVFEAFYK
KDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQYVQN
HNDPSKIDLTVNILTMGYWPTYIPMEVHLPAEMVKLQEIFKIFYLGKHSGRKLQWQPTLG
HSVLKAEFKEGKKELQVSLFQTLVLLMFNEGDEFSVEEIKTATGIEDGELKRTLQSLACG
KARVLNKAPKGKDVEDGDKIIFNDDFKHKLFRIKINQIQMKETVEEQTSTTERVFQDRQY
QIDAAIVRIMKMRKTLSHNLLVSELYNQLKFPVKPGDLKKRIESLIDRDYMERDKDNANQ
YHYVA
NT seq 2538 nt   +upstreamnt  +downstreamnt
atgctgcgatcaggtgtcacctctgaaagttcgcctcaggaagagcgacaaactgctgtt
gttgtggccgcgcactgcagccatcccaagaagagagtccgttcggcggagtccggagag
ccggaaagtctcagcggttcttaccataaagccgcctcctcctcctccctctccctctcc
ccctccccccagcaaacccctcagcacaaccacaaccacctcaagaagaggcagcgggcg
gaggagccgctggagtgtgtggtgtcggacatggccgaggagggccaacacaagaaggcc
aacttctcagctctggtcggccacaccaatggcctcaccaagtccgccactctcaccggg
aaaccggggacgtctaagaaattagtcatcaaaaactttaaagataaacctaaattgcct
gacaactacactcaagatacttggcagaaactccatgaagcagttggagccattcaaaga
agcacatctattaaatacaatctggaagagctttatcaggctgttgaaaatctgtgttcc
tataaagtgtcaccaacactgtacaaacaactgagacaagcctgtgaagatcacgtgaag
gcacagattcatcaattcagagaggattccctggatagtgttctctttctgaagaagatt
aacaaatgttggctggatcactgtaggcaaatgattatgattaggagcattttcttattt
ctggaccgaacgtacgttctgcagagttcaatgcttccatctatctgggatatgggttta
gagcttttccgaacccacatcatcaatgaccgaattgtacagagcaaaaccattgatgga
atacttttgctgattgaaagagagcgaactggggaggctgtggaccgaagcttgataaga
agtctgttaagcatgttgtgtgatttgcaggtttatcaggaatcatttgaacataggttt
ttggaggagactaatcacttatatgcagcagaaggccaaacactaatgcaagaaagagag
caggtaccagaatatcttcaccacgtaaacaaacgtttggaagaggaatcagaccgagta
attacttacttggatcaaagtacacagaaaaggttggttgcctgtgtagagaaacagctt
cttggagaacatctgacagctattcttcagaaaggtcttgataatctacttgatgagaat
cgagtggcagacctcactcttctttaccagctgtttagcagggttaaaggtggattgcag
gtacttctgcagcactggagtgaatatattaagacctttggcacaacaatagtggttaat
cctgaaaaggataaaacaatggttcaagagctattggactttaaagacaaagtggatcat
gtaattgatgtatgtttcataaaaaatgagaagttcatcaatacaatgaaggaagctttt
gagacttttattaacaagagaccaaacaagcctgctgaattgatagccaagtatgtagat
tcaaagttgcgagctggtaacaaagaagcaaccgatgaagaactggagagaatgctggat
aaaatcatgataatatttcgatttattcacggtaaagatgtatttgaggccttttataag
aaagatttggctaagcggctgctggttggaaaaagtgcttcagtagatgctgagaaatca
atgttatccaaactgaaacacgaatgtggtgcagccttcaccagtaaactagagggaatg
ttcaaagatatggaactatctaaagacattatggttcattttaaacagtatgtgcaaaat
cataatgaccctagcaagatagacctcacagtcaacattctgacaatgggttattggccg
acgtacatacccatggaggtacatttgccggctgagatggtaaaactccaggagattttt
aagatattttatctgggaaaacacagtggcagaaaactacagtggcaaccaactttagga
cattctgttttgaaagccgaattcaaagagggtaaaaaggaacttcaggtttcattgttc
caaacattggtgctgctcatgtttaatgaaggggatgaattcagcgtggaagaaatcaaa
acagctactggtatagaggatggtgaattgaaaagaacattgcagtcattagcctgtggc
aaagctcgtgttttgaacaaagctccaaagggaaaagatgtagaagatggagacaaaatt
atcttcaatgatgactttaaacataaattgttcagaataaagattaaccaaatccagatg
aaagaaactgttgaggaacaaactagcaccacagagagagtgttccaggatagacagtac
caaatagatgctgctattgttcgaatcatgaaaatgagaaaaacgctcagtcataacctc
cttgtttcagaactttacaaccagttaaaatttccagtgaagcctggagacttgaagaaa
agaatcgagtcacttattgatcgtgactatatggagagggacaaagataatgccaaccaa
taccactatgtggcataa

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