Callorhinchus milii (elephant shark): 103178771
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Entry
103178771 CDS
T03088
Symbol
ercc4
Name
(RefSeq) LOW QUALITY PROTEIN: DNA repair endonuclease XPF
KO
K10848
DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk03420
Nucleotide excision repair
cmk03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
103178771 (ercc4)
03460 Fanconi anemia pathway
103178771 (ercc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmk03032
]
103178771 (ercc4)
03400 DNA repair and recombination proteins [BR:
cmk03400
]
103178771 (ercc4)
DNA replication proteins [BR:
cmk03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
103178771 (ercc4)
DNA repair and recombination proteins [BR:
cmk03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
Other NER factors
103178771 (ercc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC4
Motif
Other DBs
NCBI-GeneID:
103178771
NCBI-ProteinID:
XP_007891886
LinkDB
All DBs
Position
Unknown
AA seq
901 aa
AA seq
DB search
MTPLLEHERQIFLDLFHEDGLVVTARGLGVDRILLHXLKLHCDPGNLVLVLNTNVAEEEY
FIEQLRSEGVSHLPRIINNEIPSSERYTVYTEGGVLFVTSRILVVDFLTNRIPANLITGI
LVYKAQKIIESCQEAFILRLYRQKNKQGFIKAFTDNAVAFSAGFCKVERVMRNLFVRKLY
LWPRFHIAVSSFLERHKPEVIELHVSLTPAMLAIQTSMMDIMNACLRELKRYNPSLEIED
LSLENAIGKSFDKIIRHYLDPVWHQLGAKTKSLVQDLKILRTLLQYLTQYDCVTFLNLLE
SLRDSEKTFGQNSGWLFLEASDIMFVNARARVYKLPETRLKTFKNPAKVEQKEMKETEGK
RELVLEQNPKWEALSEVLKEIRSENEPGEALESPGQVLICASDDRTCAQLKEYITVGAEA
LLTRLYSKTLGTNEKAEDAWANSVKDRVLGKSKKMSKSDNGPKQKKAKTESVKNCTTRKK
PELTLTQMTGGAKHEGTKKEEGGEESGSQESSTEEAEGLPQNLPTNSCYGILTEPLLLIH
PLQGCSDSYSLTRVLHEVDPRYVILYDAELTFVRQLEIYKASRPGQPLRVYFLIYGGSSE
EQRYLTTLRKEKMAFEHLIREKAVMVVPQEREGRDDSNQDLVRSVVPPTATADTRKAGGQ
GQKKEEHCIIVDMREFRSGLPSLIHKRGIDIEPVTLEVGDYILTPDICVERKSVSDLIGS
LNNGRLYAQCVSMTRYYKRPMLLIEFDPSKSFSLNSKGTIHQEISANDTTSKLALLTLHF
PRLRILWCPSPHVTAELFEELKQGRPQPDAATAMAIAADLDTLSESGKYNPGSHDFLMKM
PGVNSKNCHALMNRVENLTELVSLTKDSLADILGNANNAKLLWEFIHSSCKDNVAQGKRK
K
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atgacacctttgctggagcacgagcggcagatctttctcgacttgttccacgaggacggg
ctcgtggtgacggcccggggcctgggggtggacaggatcctgctgcacntcctgaagctg
cactgcgaccccggcaacctggtgctggtgctcaacaccaatgtggccgaggaggagtac
ttcattgagcagttacgctctgaaggggtgtcacaccttcctcgtatcattaacaatgaa
atccccagtagtgagcgctacactgtgtacactgaaggtggagtcttgtttgtgaccagt
cgcattctggtagttgacttcttaacaaatcgaattcctgcaaaccttatcacaggaata
ttggtatacaaagctcagaaaatcatcgagtcctgtcaagaagcatttattctccggcta
tatcggcagaagaacaagcagggttttatcaaggctttcacggataatgcggtggctttc
agcgctggattctgtaaagtggagagggtgatgagaaatttgtttgttcgaaagctatac
ctctggccaagatttcacatagctgtcagctctttcttggagagacataaacctgaagta
atcgaactgcatgtgtctctgacacctgccatgctggctatccaaacttctatgatggac
ataatgaacgcctgcttgagagaacttaaacgctacaacccatcgttggaaatcgaggat
ctgtctcttgagaatgctattgggaagtcatttgacaagataattcggcactatttggat
ccagtctggcaccagcttggcgctaagaccaagtctctggtccaggatttgaagattctc
cgcaccctattacagtatctgactcaatatgattgtgttaccttcctcaatctgctggaa
tctcttcgagacagcgagaaaacatttggacaaaactcaggatggttgttcttggaggcc
agcgacatcatgtttgtgaatgctcgagctagagtttataagcttcctgagaccaggctt
aaaaccttcaaaaatccagccaaggttgaacaaaaagaaatgaaggagacagagggaaag
agagagctggtactggagcagaacccaaagtgggaagcattgagtgaggttctgaaagag
atcaggagcgaaaatgaaccaggtgaagccctggaaagcccaggccaagtgctgatctgt
gccagcgatgaccgaacctgtgctcagctgaaggagtacatcactgttggagccgaggca
ttgttaacgaggctgtacagtaaaaccttggggacgaatgagaaggcggaggatgcgtgg
gcaaactctgtaaaagacagggtgctcggtaagtccaagaaaatgtctaaatccgacaat
gggcccaaacagaagaaagcaaaaacagagagtgttaaaaattgcacaaccaggaagaaa
cctgaactgaccttgacacaaatgacaggaggagcaaagcatgaaggtactaagaaggag
gaaggtggagaagaaagtgggagccaggaaagcagcactgaagaagctgagggtttgcca
cagaatctaccaacaaactcttgctatgggatcctaacagagccgctccttctcatccac
ccgctgcaaggctgcagtgattcgtacagcctaacgcgtgtactgcacgaggttgatccc
cgctatgttattctgtatgatgcagagctgacatttgttcgccagcttgagatttacaaa
gccagcaggcctggccagcccctcagagtttacttcctgatttatggtggctcttcagaa
gaacagcgttacttgacaactctgagaaaagagaagatggcttttgagcatttaataagg
gagaaggctgtaatggttgtccctcaggagagggagggaagagatgactcaaaccaggac
ctcgtacgcagtgtggttccaccgactgcaactgcagacacacgcaaggcaggtggccag
ggacagaagaaagaggaacattgcattatagtggacatgcgggagttccgcagtgggctt
ccttccctgatacacaaacgcggcattgacattgagccggtcactctggaggtgggcgac
tacattctgactcctgatatttgtgtggaacgcaagagtgtgagcgacttgatcggctcc
ttgaacaacggccgcctctacgcacagtgcgtctccatgacccgatactataagcgaccc
atgcttctaatcgagtttgatcctagcaaatccttctccctgaattccaaagggacaatt
caccaggagatttccgccaacgataccacctccaagctcgctctgctgacgctccacttt
cccaggctgcgcatcctctggtgcccgtctccacacgtaacagctgaactgtttgaggag
ctgaagcaaggcaggccccagcccgatgcagccactgccatggctattgcagctgattta
gacactctctccgagtcgggcaaatacaatccaggctcacatgacttcctgatgaaaatg
cctggcgtgaacagcaaaaactgccatgctctgatgaaccgtgtggagaacctcactgag
ctggtcagcctcaccaaagacagtttagcagacatattaggcaatgctaacaatgccaag
ctactgtgggaattcattcactcttcatgtaaagataatgtagcacaaggaaaacgaaaa
aagtaa
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