Callorhinchus milii (elephant shark): 103189438
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Entry
103189438 CDS
T03088
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103189438 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmk03019
]
103189438 (cnot1)
Messenger RNA biogenesis [BR:
cmk03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103189438 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103189438 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
103189438
NCBI-ProteinID:
XP_042196272
LinkDB
All DBs
Position
Unknown
AA seq
2407 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYKSSQQEIAHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFALQFVKQKLPDLLRSYIDADVGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
SDSGGIAKTMMDSSLADFMQEVGYGFCTSAEECRNIILQFGVREMTASQVARVLGMMART
HSGLTDGIPLQSISSPGSGIWSDGKDKSDSAQAHTWNVEIFIDVVKELNPNLNFKEVTYE
LDHPGFILRDSKGLQIVVYGIQKGMGIEVFPVDLIYRSWKHAEGQLSFIQHSLMNPDVFC
FADYPCHTVVTDILKAPPEDDNREIATWKSLDLIETLLRLSELGQYEQVKQLFSFPIKHC
PDMLVLALLQINPTWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGVRERCHTLQKEPFIQACVTFLKRRCPSIMGGLAPEKEQPKSAQLPPETLAT
MLMCLQACAGSVSQELSETILTMVANCGNVVNKARQPPPGVMPKVRVPSTSSIETMSPVQ
IDPLSGIASLTIGGSAASHTGSMSAFSTNMNSAFNTPQSPAKAFPPLSTNNQTTPFSGIG
GLPSQLPGGLGTGSLTGMGTGGLGLQTVNTDPFGQRKMSTSGLNPQTFQQSKMKPSDLSQ
VWPEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSSIKREREVFNCM
LRNLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFDSKMY
YFGIAALDRFKNRLKDYPQYCQHLASIGHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITT
PGSIALAQAQAQAQAQNKTPLARQVSTIVPTSTTSTVTKTTTVTRPTGVSFKKDVPPSIN
TTNIETLLVATDQAERIVEPPENIQEKVAFIFNNLSQSNMTQKVEELKETVKDEFMPWVS
QYLVMKRVSIEPNFHSLYSNFMDTLKNPEFNKMVLIETYRNIKVLLTSDKAAANFSDRSL
LKNLGHWLGMITLAKNKPILHIDLDVKSLLLEAYVKGQQEMLYVVPFVAKVLESSVRSMV
FRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINDLKPGNLLKDKEKLKN
LEEQLSAPKRECKLPEDLPVVVTTAAPVPAATTTTCTVTGPPQPQFSYHDINVYSLAALA
PHITVNPNIPLFQAHPQLKSYVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALD
SEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNNFASAIRAASPQQREMMEQA
AAQIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAE
RMPEQIRLKVGGVDPKQLAVYEEFARNIPGFLPSNDISQPTGFLAKPMQQAWATDDIAQI
YDKCITELEQHLHAIPPGLAMNPQAQALRNLLEGMVMARNSRDAIAALGLLQKAVEGLLD
ATSGADPDLLLRYRECHLLVLKALQDGRAYGSQWCNNKITRCLIECRDEYKYNVEAVELL
IRHHLVNMQQYDIHLAQSMENGLNYMAVAFAMQLVKILLVDERSISHVTEADLFNTIETL
MRISAHSRGNAPEGSTKALRIVLRRLPQLMDLLRANYEAMMDRAHGGPNFMMHSGISQAS
EYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFR
LCTEMCVEISYRAQQEQQHNPTANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKI
NLLNKVLGIVVGVLLQDHEVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFC
NTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKFLAPYLR
NVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNM
RLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSELRSNL
QVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDT
EGKELKNGKSYNGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLL
ERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQV
MEGTGAS
NT seq
7224 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgttatcgctggccttgtctcaaatcagctaccttgtggataacctg
accaagaagaactacaagtccagccagcaggagatcgctcatatcgtgaaccgacacggg
cccgaggcagacagacatttgttacgctgtctattctcgcatgtggatttcagtggcgat
ggtaaaagtagcggcaaggatttccatcagactcagtttctgattcaggagtgtgcgtca
ctgatcaccaagccgaactttatctcgacgctgtgctacgccattgacaatccattgcac
tatcagaagagtctgaaaccttcaccccatctgtttacgcagcttagtaaagttctcaag
ttaagtaaggtccaggaggttatctttggccttgccttgctgaattcttctagctcggat
ctgcgaggatttgctctccagtttgtgaaacagaagcttccagatctcctgcgatcttac
atcgacgcggacgtaggtgggaaccaagaaggtggctttcaagatattgcaatagaggtc
ctgcacctgctcctctcccatctccttttcgggcagaaaggagcatttggtgttggacag
gaacagattgacgctttccttaaaacattgcgcagagatttcccgcaggagcgctgccct
gtggtgcttgcaccactgctatatcctgaaaaacgggacattctgatggacaggatcctg
tctgattcgggagggatagcgaaaaccatgatggacagctcactagcagatttcatgcaa
gaagtaggctacgggttttgtaccagtgctgaagaatgtcgcaacatcatcctgcagttc
ggggttcgggagatgacagcctctcaggttgccagggtattgggaatgatggctcgcaca
cattcaggtctcacggacggaattcctttgcaatccatctctagccctggaagtggaatc
tggagtgacgggaaggacaaaagtgactcggcacaggcccacacctggaatgtagaaata
tttattgatgttgtgaaagaattgaatccaaatctgaatttcaaagaggtgacctatgag
ctggatcacccaggattcattcttcgggacagcaaagggctccagattgtggtgtatggc
atccaaaagggcatgggaatcgaggtcttccctgtggatctgatttacaggtcgtggaaa
catgcagaaggacagctctcctttattcagcattcgcttatgaacccggatgtgttctgt
tttgctgactacccctgtcacacagtggtcacagacatcctgaaagcccctccagaggat
gacaaccgggaaattgccacatggaaaagtctggaccttatagaaaccttactacgactt
tcagagctgggacagtatgagcaggtcaaacagctcttcagctttcccatcaaacactgt
ccggacatgctggtactggccttactgcagatcaacccaacctggcacacactgcgccat
gagctaatttccaccttgatgccaattttcttgggcaatcatcccaactctgccatcatc
ttgcactacgcatggcacggacagggccaatctccctcaatccgacagctgatcatgcac
gcaatggcagagtggtatatgcgtggtgagcagtatgaccaggccaagctttcacgcatt
ctagatgtagctcaagacttgaaggccttgtccatgctgctaaatggtactccgtttgcc
tttgttattgaccttgctgcacttgcgtctcgccgagaatacctcaaacttgataaatgg
ctgactgataaaatccgagagcatggggtaagagagcgatgtcacactttacaaaaagag
ccattcatccaggcatgtgtgaccttcctgaagaggcgctgtccctccatcatgggcgga
ctggcccctgaaaaggaacagcccaaaagtgcacaactccctccagaaacactggctacc
atgttgatgtgcctacaggcttgtgcagggagcgtctcccaggagctctctgagaccatc
ctcacaatggtggccaactgtggcaacgtggtgaacaaagctcggcagccacctcctggt
gtgatgcctaaggtccgagtcccgagtaccagcagcatagagaccatgtcacctgtacag
attgaccctttgtctggtatcgcctcgttaacaattggaggatcagctgcatctcacacg
gggagcatgtcggccttctctacaaatatgaattctgcattcaacacccctcaatcacca
gcgaaagcctttcctccactctcaacaaacaaccagacaacgcccttcagtggaatcgga
ggtcttccttcccaactgccaggtggtttggggacagggagcctgactggcatgggaaca
ggtggcctcggactgcaaactgtgaacactgacccctttggacaacggaagatgagcaca
tctggattgaacccacagacattccagcagagtaagatgaaaccttctgacctctctcag
gtatggccagaggcaaatcagcactttagcaaggagatcgacgatgaggcaaacagctac
ttccagcgcatctacaatcacccgccacacccgacaatgtctgtggatgaggttctggaa
atgctacagaggttcaaggattccagcatcaagcgtgaacgggaagtgtttaactgtatg
ctgcggaacctgtttgaggagtatcgcttcttcccccagtacccagacaaagagctgcat
atcacagcctgcctcttcggtggcatcattgagaaggggctggtcacttacatggccctg
gggcttgcactacgctatgttcttgaagctttacgcaaaccctttgactccaagatgtac
tactttggcattgctgcactagacagatttaaaaatagattgaaggactatcctcagtat
tgtcagcacttggcttctattggccactttttgcagttcccacatcatttgcaggagtat
attgagtatggccagcagtcccgagaccctcctgtgaagatgcagggtagtattacaacc
cctggcagcattgccttggcccaggctcaagcccaggctcaagcccagaataagactcct
ctggccaggcaggtcagcaccattgtccccacatccactaccagcaccgtgaccaaaacc
actacagtcacccggcccaccggagtcagctttaagaaggacgttccaccctccattaat
acaactaacatcgagacgttgttagtggccacagaccaggcagagagaatagtggaaccg
cctgagaacattcaggagaaagtggctttcatcttcaacaacctctcacaatccaatatg
acacagaaggtggaggagctgaaggagactgtgaaggatgaatttatgccttgggtatcc
caatatttggtcatgaagagggttagcattgagcctaacttccacagcctctactcaaat
ttcatggacactttgaaaaatccagagttcaataaaatggtgctcatcgaaacctataga
aacatcaaggtactgctgacctctgacaaagctgctgctaacttttcagaccggtcccta
ctgaagaacctgggccactggttgggcatgattacattagccaaaaataagcccatttta
cacattgatctggatgtcaaatcattgcttctggaagcgtatgtgaagggtcagcaagaa
atgctctacgtagtcccttttgttgccaaagttttagaatccagcgtgcggagtatggtg
ttcaggccccccaatccatggacaatggccatcatgaatgtattagcagagctgcatcag
gagcatgatctaaagttaaatctcaagtttgagattgaggtgctgtgtaaaaacctggct
ctggacatcaatgacctgaagcctggcaacttactgaaggacaaagagaaactgaaaaat
ctggaagagcagctttctgctccgaagagagagtgcaaactgcccgaggaccttcctgtg
gtggtcacaacagctgctccggtgcctgccgccaccaccacaacgtgcacagtaactggc
ccaccacagcctcagttcagctaccacgacattaatgtctactcactcgcagccttggct
cctcacatcaccgtgaatccaaatatcccgttgttccaggcacaccctcagctgaagtcg
tatgtccgacaggcgatcgagcgcgctgtgcaggagcttgtccatcctgtcgtggaccgt
tccatcaagatcgccatgacgacctgtgaacagattgtcaggaaagactttgccttggat
tcggaggagtcccgcatgcgggtggcagcacatcacatgatgcggaacctgactgcgggc
atggcgatgatcacctgcagggaacccttgctaatgagcattgctaccaacctcaagaat
aattttgccagtgccatccgggctgcgtccccacagcagagggagatgatggaacaagcg
gctgcacagatcgcacaagacaactgtgagctggcgtgctgcttcattcagaaaaccgca
gtggaaaaggcaggacccgaaatggataaaaggcttgcgactgagtttgaactgcgtaag
cacgcgaggcaggagggtcggcgttactgtgaccctgtggtgctcacttaccaggctgaa
cgaatgcccgagcaaatccgactaaaggtaggcggtgtcgatcccaaacaattagccgtg
tacgaagagtttgcacgtaacatcccaggattcctacccagcaatgacatctcacagccc
acaggcttcctggcaaagcctatgcagcaggcctgggcgactgatgacatagcacagatc
tacgataagtgtatcacagaactggagcagcatcttcatgctattcctcccggcctggcc
atgaacccccaggcccaggcgctgcgtaacctactggagggcatggtgatggccaggaac
tcccgggatgccattgctgccctcggtctcttgcagaaggctgtggaggggctgttggat
gccacaagtggtgcagacccagatctcttgctccgttatcgggagtgccacttactggtg
ctgaaagccctgcaggatggtcgtgcctatggatcccagtggtgcaacaataaaatcaca
aggtgtctcattgagtgccgtgacgagtacaagtacaatgtggaggctgtggagctgctg
atcagacaccacctggtgaacatgcagcagtacgacatccacctggctcagtcgatggag
aatggtctgaactacatggcggtggcctttgccatgcagctggtgaagatcctgctggtg
gatgagagaagcatcagtcacgtcaccgaggccgatctgttcaacaccattgaaacactc
atgaggatcagtgctcattccaggggaaatgcccctgaaggatccacaaaagcattacgg
atagtccttagaaggttgccacagctgatggacttgctccgcgctaactatgaggctatg
atggacagggcccacgggggccccaacttcatgatgcactcagggatctcccaggcctcg
gagtacgacgacccgcccggcctccgggagaaggctgagtacttgctgagggaatgggtc
aatctgtaccactccgccgcggcgggccgggacagcaccaaagccttttctgcttttgtt
ggacagatgcaccagcaaggcattctgaagactgacgatctgatcactcgcttcttccgc
ctgtgcacggagatgtgtgtggagattagttatcgtgcacaacaggagcagcagcacaac
cccaccgccaaccccaccatgatccgagccaagtgctaccacaacctggacgcatttgtc
aggctcatcgccctgctggtcaagcactccggagaggccaccaacactgtcaccaaaatc
aacctcctcaacaaggtgttggggattgttgtgggagtcctgctgcaggatcatgaggtg
cgtcagagtgagtttcagcaactgccgtatcaccgcatcttcatcatgctgctgctcgag
ctgaacgctccagagcacgttctggagaccatcaacttccagacactgactgctttctgc
aacacattccacattttgcggcctactaaagctcctggcttcgtctatgcctggctggaa
ctgatctcccacaggatcttcattgcaagaatgctggcgcatacacctcaacagaagggc
tggcccatgtatgcccagttgctaattgatctgttcaagttcttggctccttacttaagg
aatgtggagttgacaaaacctatgcaaattctttacaagggcacacttcgtgtcttactg
gttcttttgcatgactttccggagttcctgtgtgactaccattatggcttctgtgatgtg
atcccacccaactgtatccagctgcggaacctgatcctgagtgccttcccacgcaacatg
cggctgccagatcccttcactcccaacctgaaggtggatatgctgagcgaaatcaacatt
gctcctcggatactgaccaacttcaccggagtgatgccacctcagtttaagaaggacctg
gactcctatttgaagacccgttctccagtcaccttcctgtctgagctgcgcagcaacctg
caggtctcaaacgaacctggcaatcggtacaacattcagctaatcaacgcactggtgctg
tatgtgggcacgcaggcgatcgctcacatccacaacaagggcagcaccccctccatgagc
accatcacccactcagcccacatggacatcttccagaacctggctgtggacctcgataca
gaaggtaaagaactgaaaaacggcaaaagctacaatggtcggtacttgttcctgaacgcc
atcgccaaccagctgcgttaccccaacagccacactcactacttcagctgcaccatgctc
tacctgtttgctgaggccaacactgaggccattcaggagcagatcaccagggtgctgctg
gagcggctgattgtgaacaggccgcacccgtgggggctcctcatcactttcatcgagctg
attaaaaatccagcgttcaagttctggaaccatgagttcgtccactgtgctcctgagatt
gagaaattgttccagtctgtagctcagtgctgtatgggacagaagcaggcacagcaagta
atggaaggcactggtgccagctaa
DBGET
integrated database retrieval system
