KEGG   Callorhinchus milii (elephant shark): 121852719
Entry
121852719         CDS       T03088                                 
Symbol
gtf2h4
Name
(RefSeq) general transcription factor IIH subunit 4
  KO
K03144  transcription initiation factor TFIIH subunit 4
Organism
cmk  Callorhinchus milii (elephant shark)
Pathway
cmk03022  Basal transcription factors
cmk03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cmk00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    121852719 (gtf2h4)
  09124 Replication and repair
   03420 Nucleotide excision repair
    121852719 (gtf2h4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cmk03021]
    121852719 (gtf2h4)
   03400 DNA repair and recombination proteins [BR:cmk03400]
    121852719 (gtf2h4)
Transcription machinery [BR:cmk03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     121852719 (gtf2h4)
DNA repair and recombination proteins [BR:cmk03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     121852719 (gtf2h4)
SSDB
Motif
Pfam: Tfb2 Tfb2_C Helicase_C_3
Other DBs
NCBI-GeneID: 121852719
NCBI-ProteinID: XP_042202535
LinkDB
Position
Unknown
AA seq 452 aa
MQKVKLKCKNLHEFMRDLRPGVLDKLYNHPATCLAVFRELPVLARNYVLRLLFVEQPIPE
AAVSFWVKKENHSELTHCVNTLTSLRLWLPQQLPGGLQGLLLNPIFRHNLRIALLGGGKV
WADDTSQLGPDKHARDIVSLDKYSLERWEVILHFMVGSANAAVSQDLSQLLIQAGLMKSE
PGDSPCITSAGFQFLLLDTSSQLWYFMLQYLQTAEARGMDLVEILSFVFQLSFSTLGKDY
TVEGMNDSLLTFLQHLREFGLVFQRKRKSRRFYPTRLAINLASGVSASARDVHQTGYIIV
ETNYRIYAYTDSELQIALVALFADMLYRFPNVIVAQLTREGVQQAIANGITADQIIHFLR
TRAHAVMLKQTPILPTTITDQIKLWELERDRLRFSEGVLYNQFLSQMDYEVVRDFANDLA
VLVWENPAKRLMVVTPEGHPDVKRFWKRQKHS
NT seq 1359 nt   +upstreamnt  +downstreamnt
atgcagaaagtgaagttaaagtgtaagaatcttcacgagtttatgagggatctgagaccc
ggagtcctcgacaaactctacaaccacccggccacctgcctggcggtcttcagggagctg
ccagtcttggccaggaattatgtactacgtttgctgtttgtggagcagccgattcccgag
gcggccgtttccttctgggtcaagaaagaaaatcacagcgagctgacgcactgtgtgaac
acactgacctccctcaggctgtggttaccccaacagttgccgggggggctgcagggtttg
ctgctgaaccccatcttcagacacaacctgcgcatcgcactgcttgggggggggaaggtc
tgggcggacgacacaagtcaactgggacctgacaaacacgctcgagatatcgtctccctt
gacaagtacagcctggagcgttgggaggtgattctgcactttatggtgggatcagcaaat
gctgccgtcagtcaggacctctcccaactcctcatccaggccgggctgatgaaaagtgag
ccaggagacagtccgtgtataacctcggctggattccaatttctcctcttagacaccagt
tctcagctttggtattttatgctccaatatctacagacagcagaggctcgagggatggat
ttggtagagattctctcctttgtttttcagctcagtttctccaccctgggcaaggattat
actgttgaggggatgaatgattctctgttgacgtttcttcagcatctgagagagtttgga
ctcgtctttcagaggaagaggaagtctagacggttttacccgactcggctggccattaac
ctggcgtctggggtctcagcctctgcgagagacgtacatcagacaggatacatcatcgtc
gagacaaactaccgaatttacgcttacactgactcggagttacagatcgcattggtggct
ctgtttgccgacatgctgtaccgattcccaaacgtgatcgtggctcaactgacacgggag
ggtgtacagcaagccatcgctaacggcatcacagccgaccagattatacactttctgagg
accagggctcatgctgtgatgctcaaacagacaccgattttgcctacgaccattactgac
cagatcaaactgtgggaactagagagagaccgactgcgcttctcagagggggtgctgtat
aaccagttcctgtcccagatggactatgaagtggtcagagactttgctaatgaccttgcg
gtgctggtttgggagaacccggccaagagactaatggtcgtcacccccgagggtcaccct
gatgtcaagcgcttctggaaacgacagaaacacagctga

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