Cucumis melo (muskmelon): 103485999
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Entry
103485999 CDS
T03195
Name
(RefSeq) uncharacterized protein LOC103485999 isoform X1
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103485999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103485999
03400 DNA repair and recombination proteins [BR:
cmo03400
]
103485999
Enzymes [BR:
cmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
103485999
Messenger RNA biogenesis [BR:
cmo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
103485999
DNA repair and recombination proteins [BR:
cmo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
103485999
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
zf-CXXC
Motif
Other DBs
NCBI-GeneID:
103485999
NCBI-ProteinID:
XP_008442004
UniProt:
A0A1S3B4Q5
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Position
8:complement(24504769..24542076)
Genome browser
AA seq
804 aa
AA seq
DB search
MEAILKRYFGFSAFRPYQKEVIQAILRGKDCLVVTGTGSGKSLCYQVPPLVVGKTGIVVS
PLISLMQDQVMALKQRGIKSEYLGSTQTDSTVQAKAESGQYNILFMTPEKACSLPLSFWS
KLKKAGICLFAVDEAHCISEWGHNFRAEYELLDDFRDVLPGLPFVALTATAPEKVRSDII
NYLKMKDPQVTIGSFDRTNLFYGVKFFKRPRLFMNELVLDISKYLASGGSTIVYCRTIKA
VEQISKSLKEAGISAGIYHAQMDKESRAESHRLFIRDEVQVMVATVAFGMGIDKPNVRQV
IHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKAELYCGESPTENKRTAIMESL
MAAQRYCSIATCRRNFLLGYLGEKSQSEKCGNCDNCIDSKKEHDMSKEAFLLLACIQSCR
GKWGLNMPVDILRGSRAKKMMRYDQFDKLPLYGLGREYSSNWWKALASQLISNGYLTENI
RDFYRTIGISAKGEKFLNSARQDCQPPLVLPMTSEMTGENEDASALSESGKMDNLATLKS
GLSEAEEKLFQLLLEERMKLARSARTAPYAICGDQTVQRIALTRPSTKARLANIDGVNQH
LLKMHGDLILEAVKRLSQQVSLSLDGEYREPNKRRPLAPEKFEAWKMWHEHGLSVQKIAN
FPGRSAPIKETTVSGYIVDAAQEGYEIDWTKFCDEIGFTCQIFSDIQSAVTKVGSAEKLK
PIKSELPEEINYAHIKTFLVMQSCGMSPKGLDKKTDKPRTGASSLCWNKWYMTVRTKLHC
FMNEHIFSKITHLKNRRDYLNSRK
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atggaggccattctaaagaggtactttggattctcggcgtttaggccgtatcagaaagaa
gtcattcaggccattcttcgtgggaaggattgcttggtggttacgggcaccggaagtggg
aaatccttatgttatcaggtaccgcctttggtcgttggaaagactggcatagttgttagc
ccccttatatcattaatgcaggatcaggtaatggctttaaaacaaagagggatcaagtct
gagtaccttggaagtactcagactgattccacagttcaagccaaggcagagagtggtcaa
tataatatcttgttcatgacaccagaaaaggcatgctctcttcccttgagtttttggtca
aaattaaagaaggcaggaatttgtttgtttgccgttgatgaagcacactgcatttccgag
tgggggcataattttagggcagaatacgaactgctggacgattttcgcgatgttctacca
ggtcttccatttgttgcactgactgccactgcacctgaaaaggttcggagtgacattatt
aattatttgaagatgaaagaccctcaagttaccattggttcattcgatcgaacaaatctt
ttctatggagtcaagttttttaagcgtcctcgattattcatgaatgagcttgtgcttgat
atctctaagtatctagcctctggtggttcaactatcgtttactgcaggacaattaaagct
gttgagcagatatccaagtcacttaaagaagcagggattagtgctggaatttatcacgct
caaatggacaaagaatcacgtgcagaatcccacagactatttataagggatgaagtgcaa
gtcatggttgccactgttgcttttggtatgggtattgacaaaccaaatgtaagacaggtg
atacattatggctgcccaaagagtctagaatcttattatcaggaaagtgggcgatgtggt
agagatggtattgcttctgtttgctggctttattacacgagaagtgattttgctaaagca
gagctctactgtggtgaatcaccaactgaaaacaaaagaacagctattatggagtcattg
atggctgcacagcggtattgttctatagcaacttgcagaagaaacttcttgctcggttat
cttggggaaaaatctcagtctgaaaaatgtggaaattgtgataattgcatagactcaaaa
aaggagcatgacatgtcaaaagaagcatttcttctactggcctgcatccaatcatgcagg
ggtaaatggggactgaacatgcctgtagatattcttcgtggatctagagcaaaaaagatg
atgcgttatgatcagtttgataagcttccactttatggacttggaagagaatactcatca
aattggtggaaagcactagctagtcaactaatttcaaatggctatttgacagagaacata
cgcgatttctacagaaccataggtatcagtgcaaaaggggaaaaatttctcaattctgcc
agacaggactgccaaccacctctagttttgccgatgacgagtgaaatgactggtgaaaat
gaagatgccagtgcactaagtgaatctgggaaaatggataatttggccactttgaagagt
ggactttcagaggccgaggaaaaactctttcaattacttttagaagagagaatgaagctt
gctagaagtgctcgaactgccccgtatgccatttgtggtgatcaaacagttcaaagaatt
gcattgactagaccatctactaaggcaagattagcaaatattgatggtgtcaaccagcat
ctgctaaaaatgcacggagatctaattcttgaagcagtcaagcgtctatcacaacaagtc
agtctatcactggatggcgaatatagagaaccaaacaaacgacgaccattggctccagaa
aagttcgaagcttggaaaatgtggcatgaacatggtctctcggtgcagaaaattgctaac
ttccctggtagatcggcacctatcaaagaaactaccgtttctgggtatattgttgatgca
gcccaggaaggatatgaaatcgactggaccaaattttgtgatgagataggatttacatgt
cagatattctccgacattcaatctgctgtcacaaaggttggatctgctgagaagttgaag
ccgataaaaagtgaattaccagaagaaataaattatgcacacatcaagacttttctggta
atgcaaagctgtggaatgtcccctaaaggtctggacaaaaaaaccgacaaaccaagaact
ggtgcatcatcgctttgttggaataaatggtatatgaccgttcgtacaaagttgcattgt
ttcatgaatgaacatatcttttctaaaataacccatttaaaaaatagacgcgactatttg
aatagccgtaaatag
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