Cucumis melo (muskmelon): 103496159
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Entry
103496159 CDS
T03195
Name
(RefSeq) protein CHROMATIN REMODELING 25 isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
103496159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmo03400
]
103496159
DNA repair and recombination proteins [BR:
cmo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
103496159
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
SLFN-g3_helicase
AAA_22
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
103496159
NCBI-ProteinID:
XP_008456127
UniProt:
A0A1S3C3S4
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Position
6:11400838..11411313
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AA seq
928 aa
AA seq
DB search
MADEDEIVPASDISDSSDDYIDINGEAFEDEDDEEEQSSSPSPSSDEDLKSKNVDALLRG
NLVVRRQSLLPRVLSVAEGAAVCRKPFKPPCSSGYDERNNQLARRLWARKRFVPWGSLKP
ASSVISTNLFLPKAAEKDVEEESVTLPPGIDPLVLWQPEDSELNVTNLASITVDPLLVRF
LRPHQREGVQFMFECVSGLHKATDIFGCILADDMGLGKTLQSISLLYTLLCQGFDGKPMV
KKAIIVTPTSLVSNWEAEIKKWVGERVQLIALCESSREDVVSSIDNFVHPKSSLQVLIIS
YETFRMHSSKFGQSESCDLLICDEAHRLKNDQTLTNRALAALSCRRRVLLSGTPMQNDLE
EFFAMVNFTNPGILGDVSHFRRYYEAPIICGREPIATEEEKKLGAQRSAELSEKVNQFIL
RRTNALLSNHLPPKIVEVICCKLSPLQADLYNHFVQSKNVKRAITEELKQAKILAYITAL
KKLCNHPKLIYDTIKSGSPGTSGLESCIRFFPPEMFSGRSGAWTGGDGAWVELSGKMHVL
ARLLAHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGSTSISKRQKLVNRFND
LSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRF
LSTGTIEEKVYQRQMSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVRSEIHE
KMNCNRCQNCYGRPEDMDEDLSTNGACQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPL
EEDLANWGHHFDSTTVPDTILQASAGDEVTFIFSNQVDGKLVPVESMTSPRVKEAEGNGN
NSGLNQNTRQKPFLLSQHRKPLQSVTSNEDPNKGTLKFTSNVFQRETMKPVRTSVEGSMH
VTLKHKHSLGNYLPQKRMSDVSECVDFE
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgaagatgagattgtcccagcctctgatattagcgattcaagcgacgactac
atcgacattaacggtgaagcctttgaggacgaggacgacgaagaagaacaatcctccagt
ccttctccttcatctgatgaagatctaaagtcgaagaatgttgatgcccttttgagaggt
aacctagtcgtgagaagacaatcgctgctcccaagagttctctcagtggcagaaggtgca
gcagtttgtagaaaaccttttaaacctccttgctcaagtggctacgatgaaaggaacaat
cagcttgcacgtcggctgtgggcacggaaacgatttgttccttggggctctttaaaacca
gcgtcatctgttatttccactaatttatttctcccaaaagctgctgagaaagatgtagag
gaggaaagtgtaactctaccacctgggattgatcctttggtgttgtggcaacccgaagac
tctgagcttaatgtcacgaatttagcatcaataacggttgatccattgctagttcgtttc
cttcgccctcatcagagagaaggtgtacagttcatgtttgaatgtgtttccggactacac
aaggcgacagacatatttgggtgcattctggcggatgatatgggtttgggaaaaacattg
cagtcgatcagcttgctgtatacccttctatgtcaaggttttgatggaaagccaatggtt
aaaaaggctatcattgttacacctactagtctcgtgagtaattgggaggctgaaattaag
aagtgggttggagaaagggttcagcttattgctctctgtgaaagttctagagaggacgtt
gtctctagcattgacaactttgtacatcccaagagttctttacaggtgctgattatttca
tatgagacatttcgtatgcattcatcaaagttcggccaaagtgaatcatgtgatttactc
atatgcgatgaggctcaccgactgaagaatgatcagacgttgactaatcgggcattggct
gccctgtcttgcaggcgtagggtcttgttatcaggaactccaatgcagaatgacctagaa
gagttctttgccatggttaactttaccaatccaggaattttgggtgatgtttcacatttc
cgtcgatattatgaggcaccaattatctgtgggagagaacctattgctaccgaggaagag
aaaaagctaggtgctcaacgttcggctgaactaagcgaaaaggttaatcagtttatccta
cggaggactaatgcacttttatcaaatcacttgccaccaaagatagttgaagtcatttgc
tgcaagttgagtcctcttcaagcagacctatataaccattttgtacagtcaaaaaatgtt
aagcgggcaattaccgaagagctaaagcaagctaagattttggcctatataactgcactt
aagaagctttgcaatcatccaaagcttatatacgatactataaaaagtgggagtccagga
acttcaggattagagagttgtattcggtttttccctccagagatgttctctggaaggtct
ggtgcatggactggtggagatggggcttgggttgaattatcagggaaaatgcatgtccta
gctaggttactagcccacttacgccagagaactgacgaccgtatcgttcttgtctcaaac
tacactcaaacgctagatttgtttgctcaactgtgtcgtgaaaggaggtacccatattta
aggcttgatggatccacatcaatcagtaaaagacaaaagttggtcaaccgttttaatgat
ctgtcaaaggatgagttcgtttttctattgagcagcaaggctggtggatgtggtctgaat
ttgattggtggaaatcgtttagttctgtttgatcctgactggaaccctgcaaatgataag
caagctgctgcaagagtgtggagggacggacaaaagaagagagtattcatctacagattt
ttaagtaccggaacgattgaagaaaaggtgtaccagcgacaaatgtcaaaagaagggtta
caaaaagttattcagcaggagtcaacaaataaccttacgacccaggtgaacttcctttcg
tctgaggatttacgcgatttattttcgtttcatgataacgtcaggtcggaaatccatgaa
aagatgaactgcaatcggtgccaaaattgttatggtaggcccgaggacatggacgaagac
ctgtctacaaacggagcttgtcagtctgaccaagtaacttctgacattggcggatttgca
caacttgctggatgcttagacaagttgaagaaatcagagcaacaggtggggtctcctcta
gaagaagatttagccaactgggggcatcattttgactctactaccgtacctgataccatt
ttacaagcttctgctggtgatgaggttacattcattttttcaaatcaagttgatggaaag
cttgtacccgttgaatcgatgactagcccaagggtgaaagaagcagagggaaatgggaac
aactccggattgaaccaaaacacaaggcagaaaccatttttactatctcaacatagaaaa
cctttacaatccgttacttctaatgaagaccccaacaaaggtacattaaaatttacttcc
aatgtctttcaaagggaaaccatgaagcctgttagaacttcagttgaaggttcaatgcat
gtaacattgaagcacaaacactctcttggaaattacttaccacagaaaagaatgtctgat
gtttccgaatgtgtcgatttcgagtaa
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