Cucumis melo (muskmelon): 103498469
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Entry
103498469 CDS
T03195
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103498469
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103498469
Enzymes [BR:
cmo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
103498469
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103498469
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
AAA_22
SRPRB
DUF1611
ATP_bind_1
AAA_29
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
103498469
NCBI-ProteinID:
XP_008459297
UniProt:
A0A1S3C9X9
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Position
9:complement(2525257..2529524)
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AA seq
438 aa
AA seq
DB search
MAYGGPATVAGSASTSSIRQVKLDRESELRIEVGSDSPLRLRLLSGNAEIFGTELPPEIW
LTLPPRLKIAVFTWYGATLEMDGATETDYTADETPMIGYVNVHAILEGRRSRARASSSDD
PGSTQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPGCIAATPI
ELPIDPVEGIPLEMPLVYFYGHTTPSNNVDLYKVLVRELAQVLERQLTGNAESRAAGMVV
NTMGWIEGVGYELLLHAIDTLNANVVLVLGQEKLWSMLKDVLKNKPNVDVVKLQKSGGVV
SRNAKFRQKARSYRIREYFYGPANDLSPHSNIANFSDLFIYRIGGGPQAPRSALPIGAEP
TADPTRLVPVNINRDLLHLVLAVSFAKEPEEIISSNVAGFVYITDIDIQRKKITYLAPSA
GELPGKYLIVGTLTWIET
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcgtatggtggtccagccacagtggctggctcagcttcgacttcgtcaatcagacag
gtcaagctggacagagagagcgagcttaggattgaagttggaagtgactcgcctctccgt
ttgcggctgctctccggtaatgctgagattttcggcactgagcttcctcctgaaatatgg
ctcactttgccaccaaggctgaaaattgccgtcttcacttggtatggagccacacttgaa
atggatggggcgactgaaactgattatacagcagatgagacacccatgattggttatgtg
aatgttcatgccatacttgagggacgaagaagccgtgctagagcatcatcatctgatgat
cctggttctactcagggtccaagggtaattgttgtggggcctactgattcgggaaagagc
accttgtcaaggatgcttcttagttgggctgcaaaacagggttggaagcctacatttgtc
gacttggatattggccaaggttctataacaattcctggatgcattgctgctactcctatt
gagttgcccattgatcccgtggaaggtattccactcgaaatgccgctggtttacttttat
ggacacactactccaagcaataatgttgatctgtacaaagtacttgtgagggagcttgct
caagtactggagaggcaattaactggcaatgcagaatctcgagctgctggtatggttgtc
aacacaatgggatggattgagggagtaggatatgagctgcttctacatgcaattgataca
ctcaatgcaaatgttgtcttggttttgggtcaggagaaactttggagcatgctcaaagat
gtactaaagaacaagcctaatgtagatgttgtgaaacttcagaagtcaggtggagttgta
tcccgaaatgctaaatttcgtcaaaaggccaggagttacagaataagggaatatttttat
ggacctgcaaatgatctctcaccacactcgaacattgcaaacttcagtgatctttttatt
tatcgcattggaggtgggccacaggccccgcgttcagctttgcctattggagcagaacct
actgctgaccccactagattagtgcctgtcaacattaatcgggatttgctccatttggtt
cttgctgtttcatttgctaaagaacccgaagaaattatctcaagcaatgttgctggattt
gtttatattactgacatcgacatccaaaggaagaaaattacatatcttgcaccatcggcc
ggggagcttccaggcaagtatttgatcgtcggaaccttaacctggattgagacctga
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