Chamaesiphon minutus: Cha6605_2888
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Entry
Cha6605_2888 CDS
T02414
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cmp
Chamaesiphon minutus
Pathway
cmp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cha6605_2888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmp03019
]
Cha6605_2888
03009 Ribosome biogenesis [BR:
cmp03009
]
Cha6605_2888
Enzymes [BR:
cmp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cha6605_2888
Messenger RNA biogenesis [BR:
cmp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cha6605_2888
Ribosome biogenesis [BR:
cmp03009
]
Prokaryotic type
rRNA helicases
Cha6605_2888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
CMS1
Phage_integrase
FeThRed_A
Motif
Other DBs
NCBI-ProteinID:
AFY93922
UniProt:
K9UFP1
LinkDB
All DBs
Position
complement(3016839..3018398)
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AA seq
519 aa
AA seq
DB search
MTVSFSSLGLSDRIVTQLEGLGITEPTNIQEQAIPYLLAGKDVVGQSQTGTGKTAAFSLP
MIERLDWQRPVVQALILTPTRELAMQVSAAMKTFLGGNERRSPILTVYGGQAIDLQIRRL
ESGVAAVVGTPGRVIDLIDRGHLRLGQVEWLVLDEADEMLSMGFIDDIELILSKLPTERQ
TAFFSATMAPPIRSLVNRFLKSPVTVTVDQVKAAPSKIQQQVYFIPRGWTKAQALQPILE
LEQPESAIIFVRTRKAAAELTNQLQSAGHSADEYHGDLTQTQRERLLTRFRSDKVRWIVA
TDIAARGLDVDHLSHVINYDLPDSVENYIHRIGRTGRAGKEGVAISLIHSLDRRKLQAIE
RRVKQSLTVCQIPTRAQVEAAHVQKIQGKVQEALSGERVASFLPIIAKMSEEYDVHTVAA
AALQLVYDQTRPAWLDMEEPQMQERDRDRDRSNSYKPRGGGDRRGSGGGGKPVLRNSNDG
GGRYDRRDSSPRNESSRYERDNNRDNRDYRGGYRSEERV
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtttctttctctagccttggactttccgatcgcattgttacacaactggaaggt
ctggggattactgaacccaccaatattcaagagcaagccattccctatctattagctggc
aaagatgtcgtcggccaatctcaaactgggacgggtaagactgctgcattttccctgcca
atgatcgaacggttggattggcaacgtccagtcgttcaagccttaatcctgacgcctact
cgcgagttagcgatgcaggtatcggcagcgatgaagaccttcttgggcggcaacgagcgt
cgctcgccgatcttgactgtctacggcggccaagccatcgacctacaaattcgtcgctta
gaaagcggtgtagctgcggttgtcggtactcccggacgcgtcatcgacttgatcgatcgc
ggtcatctccgcttgggacaagttgaatggttggtactcgacgaagccgatgaaatgctc
agtatgggctttatcgacgatatcgagctgatcttgagcaaattgcccaccgaacgtcaa
acagcgttcttctcggcaacgatggcaccccccatccgctccttggtcaaccgcttcctc
aaatcgcccgtcaccgtcaccgtcgatcaagttaaagcagcaccttctaaaattcagcaa
caggtttacttcatccctcgcggctggactaaggctcaagcactccaacccattctcgaa
ctcgaacagccagagtctgcgattatctttgtgcggactcgtaaagccgcagcagaactc
accaaccaactccaatctgccggacacagcgcggatgagtaccatggggatctgactcaa
actcaacgcgaacgcctcctgactcgcttccgtagcgataaagtacgttggatcgtagct
accgacattgccgcacgcggtctagatgtcgatcatctcagccatgtcatcaactacgat
ctgcccgatagcgtcgagaactacatccaccgcatcggtcggacgggtcgtgcgggtaaa
gaaggggtcgccatctccttgattcactccctcgatcgtcgcaagctgcaagcgatcgaa
cgtcgcgtcaaacagtccctcacggtctgtcagatcccgactcgcgcccaagtcgaagca
gctcacgttcagaagattcaaggtaaggttcaagaagctctctccggcgaacgggtagca
tcattcttgccgattatcgccaaaatgagcgaagaatacgacgtgcatactgtcgccgca
gcagcactccaactcgtatacgaccaaactcgcccagcttggttggatatggaagaaccc
caaatgcaagagcgcgaccgcgaccgcgatcggtctaacagctacaaacctcgtggtggt
ggcgatcgtcgcggcagtggcggtggtggtaaaccagtcctccgcaatagtaacgatggt
ggcggtcgttacgatcggcgcgacagcagccctcgcaacgaaagcagccgttacgaacgc
gataacaatcgcgacaaccgcgactaccgaggcggctaccgcagcgaagaacgcgtgtaa
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