Clavibacter sepedonicus: CMS0269
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Entry
CMS0269 CDS
T00678
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cms
Clavibacter sepedonicus
Pathway
cms03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cms00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CMS0269 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cms03021
]
CMS0269 (rpoB)
03400 DNA repair and recombination proteins [BR:
cms03400
]
CMS0269 (rpoB)
Enzymes [BR:
cms01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CMS0269 (rpoB)
Transcription machinery [BR:
cms03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CMS0269 (rpoB)
DNA repair and recombination proteins [BR:
cms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CMS0269 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
CAQ00390
UniProt:
B0RB25
LinkDB
All DBs
Position
307113..310601
Genome browser
AA seq
1162 aa
AA seq
DB search
MAAARNATPTPQNGRDASRLSFAKITDTLTVPDLLALQTESFDWLVGSDAWKRRVEEGTK
QGRTDLALNSGLEEIFEEISPIEDLGETMQLGFTNPYLEEQKYSIDECKERGKTYSAPLY
VEAEFMNHLTGEIKTQTVFMGDFPLMTEKGTFIINGTERVVVSQLVRSPGVYFERQQEKT
SDKDIYSARVIPSRGAWLEFEIDKRDQVGVRIDRKRKQSVTVFLKALGLTSEQILEEFKG
VASIELTLEKDSILTKEEALKDIYRKLRPGEQVAAEAARALLDNFYFNPKRYDLAKVGRY
KINRKLGIDKQLTDSVLTVEDILATIKYLVSLHANETKMNGTRDGKPVELRLDVDDIDHF
GNRRIRAVGELIQNQVRTGLSRMERVVRERMTTQDIEAITPQTLINVRPVVAAIKEFFGT
SQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRERAGVEVRDVHPSHYGRMCPIETPEGPN
IGLIGSLASFARINSFGFIETPYRRVVDGVVTDQIDYLTASEEDEFLVAQANAPLTKDFR
FAEDRVLVRPKGGEVELVAKENVHYMDVSPRQMVSVATSLIPFLEHDDANRALMGANMQR
QAVPLLRSESPLVGTGMEGYAAIDAGDVLTADASGVVAEVSAEVVTIQLDEGGTQTYYLR
KFDRSNQGTSYNHRVLVSAGDRIEAGEVIADGPATENGELALGKNLLVAFMPWEGHNFED
AIILSQNLVKDDTLSSIHIEEYEVDARDTKLGKEEITRDLPNVSPELLADLDERGIIRIG
AEVRPGDILVGKVTPKGETELSAEERLLRAIFNEKSREVRDTSLKVPHGEQGTIIGVKVF
DSQDGDDELGSGVNQRVVVFIAQKRKITEGDKLAGRHGNKGVISKILPVEDMPFLADGTP
VDVILNPLGIPGRMNFGQVLETHLGWSAKQGWEVEGKPKWAERLPDHARQAPAGTKVATP
VFDGALEEEIAGLLDSTTVTRDGDRLIGSSGKTRLFDGRSGEPFPEPVSVGYMYILKLHH
LVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
ILGRVKVYEAIVKGENIQEPGIPESFKVLIKEMQSLCLNVEVLSADGQAVSLRDTDDEVF
RAAEELGINISTRFESSSIDDI
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
ttggctgctgcgcgcaacgcaactcccactccccagaacggtcgcgacgcatcgcggctc
tcgttcgcgaagatcactgacaccctcaccgtccccgacctcctcgccctgcagaccgag
agcttcgactggctcgtcggctcggacgcgtggaagcggcgcgtcgaggagggcaccaag
cagggtcgcaccgacctggcgctcaactccggcctcgaggagatcttcgaggagatctcc
cccatcgaggacctgggcgagaccatgcagctcgggttcacgaacccgtacctcgaggag
cagaagtactccatcgacgagtgcaaggagcgcggcaagacctactccgctcccctctac
gtcgaggccgagttcatgaaccacctcacgggtgagatcaagacccagacggtcttcatg
ggcgacttccccctcatgacggagaagggcacgttcatcatcaacggcaccgagcgtgtc
gtcgtgtcccagctcgtccgctcgcccggcgtgtacttcgagcgccagcaggagaagacc
tccgacaaggacatctactccgcccgcgtcatcccctcgcgcggcgcctggctcgagttc
gagatcgacaagcgcgaccaggtcggcgtgcgcatcgaccgcaagcgcaagcagtcggtc
accgtgttcctgaaggccctcggcctcaccagcgagcagatcctcgaggagtttaagggc
gtcgcgtccatcgagctcacgctcgagaaggactccattctcaccaaggaggaggccctc
aaggacatctaccgcaagctccgtcccggcgagcaggtcgctgccgaggccgcccgcgcg
ctgctggacaacttctacttcaacccgaagcgctacgacctggcgaaggtgggtcgctac
aagatcaaccgcaagctcggcatcgacaagcagctcaccgactcggtgctcacggtcgag
gacatcctcgcgaccatcaagtacctcgtgtcgctgcacgcgaacgagacgaagatgaac
ggcacgcgcgacggcaagcccgtcgagctgcgcctcgacgtggacgacatcgaccacttc
ggcaaccgccgcatccgcgcggtcggcgagctcatccagaaccaggtccgcaccggcctg
tcccgtatggagcgcgtcgtccgcgagcgcatgaccacgcaggacatcgaggccatcacg
ccgcagaccctgatcaacgtgcgccccgtcgtcgccgcgatcaaggagttcttcggcacg
agccagctgtcgcagttcatggaccagaacaacccgctcgcgggtctcacccacaagcgc
cgcctctcggcgctcggcccgggtggtctgtcccgtgagcgcgccggcgtcgaggtccgc
gacgtccacccgtcgcactacggccgcatgtgccccatcgagaccccggaaggcccgaac
atcggcctgatcggctcgctggcgtcgttcgcccgcatcaactcgttcggcttcatcgag
accccgtaccgtcgcgtcgtcgacggcgtggtcaccgaccagatcgactacctcacggcc
agcgaggaggacgagttcctcgtcgcccaggccaacgcgcccctcacgaaggacttccgc
ttcgcggaggaccgcgtcctcgtccgccccaagggcggtgaggtggagctcgtcgcgaag
gagaacgtccactacatggacgtctccccgcgccagatggtgtcggtcgcgacctcgctc
atcccgttcctcgagcacgacgatgcgaaccgcgcgctcatgggcgccaacatgcagcgt
caggccgtcccgctgctgcgcagcgagagcccgctcgtcggcaccggcatggagggctac
gcggccatcgacgccggcgacgtcctcaccgccgacgcctcgggcgtcgtcgccgaggtg
tccgccgaggtcgtcaccatccagctcgacgagggcggcacgcagacctattacctgcgc
aagttcgaccgctccaaccagggcacgagctacaaccaccgtgtcctggtctcggccggc
gaccgcatcgaggccggcgaggtcatcgccgacggccccgccacggagaacggcgagctc
gcgctcggcaagaacctgctcgtcgcgttcatgccgtgggagggccacaacttcgaggac
gcgatcatcctgagccagaacctggtcaaggacgacaccctctcctccatccacatcgag
gagtacgaggtcgacgcgcgcgacaccaagctcggcaaggaggagatcacccgtgacctc
cccaacgtcagcccggagctgctcgccgacctcgacgagcgcggaatcatccgcatcggc
gccgaggtccgccccggcgacatcctcgtgggcaaggtcacgccgaagggcgagaccgag
ctcagcgccgaggagcgcctgctgcgcgcgatcttcaacgagaagagccgcgaggtccgc
gacacgtccctgaaggtgccccacggcgagcagggcacgatcatcggcgtcaaggtcttc
gactcgcaggacggcgacgacgagctcggctcgggcgtcaaccagcgcgtcgtggtgttc
atcgcgcagaagcgcaagatcaccgagggcgacaagctcgccggccgtcacggcaacaag
ggcgtcatctccaagatcctgccggtcgaggacatgccgttcctcgccgacgggaccccg
gtcgacgtcatcctcaacccgctcggcatccccggccgcatgaacttcggccaggtcctg
gagacccacctcgggtggagcgccaagcagggctgggaggtcgagggcaagcccaagtgg
gccgagcgcctgcccgaccacgcgcgccaggctccggccggcacgaaggtcgccaccccg
gtgttcgacggagcgctcgaggaggagatcgccggcctgctcgactcgacgacggtcacc
cgcgacggcgaccgcctcatcggatccagcggcaagacgcgcctgttcgacggccgctcc
ggcgagccgttccccgagcccgtgtcggtcggctacatgtacatcctgaagctgcaccac
ctggtggacgacaagatccacgcgcgctccacgggtccctactcgatgatcacgcagcag
cccctgggcggtaaggcccagttcggtggccagcggttcggtgagatggaggtctgggcg
ctcgaggcctatggcgccgcgtacgcgctgcaggagctcctcaccatcaagtcggacgac
atcctcggccgcgtgaaggtgtacgaggccatcgtcaagggcgagaacatccaggaaccg
ggtatccccgagtccttcaaggtcctgatcaaggagatgcagtccctctgcctgaacgtc
gaggtgctctcggcggacggccaggcggtcagcctgcgcgacacggatgacgaggtcttc
cgcgccgcggaggagctcggcatcaacatctccacccgcttcgagtcgtccagcatcgac
gacatctaa
DBGET
integrated database retrieval system
