Clavibacter sepedonicus: CMS0747
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Entry
CMS0747 CDS
T00678
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
cms
Clavibacter sepedonicus
Pathway
cms03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CMS0747
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cms03400
]
CMS0747
Enzymes [BR:
cms01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CMS0747
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CMS0747
DNA repair and recombination proteins [BR:
cms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CMS0747
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Auto_anti-p27
DZR
zf-ribbon_3
TF_Zn_Ribbon
OrfB_Zn_ribbon
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
CAQ00867
UniProt:
B0REM0
LinkDB
All DBs
Position
795672..796607
Genome browser
AA seq
311 aa
AA seq
DB search
MPELPEVEVVRAGLEPAVAGARITGVEILDARSLKRHDPLEGAFVDLLVGRVITSAVRRG
KFMWLPLEPEPTGDRTGPRALVTHLGMSGQVLLREPGSDPDGLLRIRMGIEHPAHGELVV
AFVDQRIFGSMAVDRLVATPDGHAGGRGSTAALVPTQVAHIARDPLDPAFDDEQLLSRLA
RRRTGIKRALLDQTLVSGIGNIYADEALWAARIHYAHPTDQLGRGRALRLLAEVRHVLAR
ALAEGGTSFDAQYVNVNGASGYFSHSLNAYGQQGKPCPRCGTPIVREAFMNRGSHFCPRC
QALPDPDAAAA
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgagctccccgaggtcgaggtcgtccgcgccggcctcgagcccgcggttgctggt
gcgcgcatcacgggcgtcgagatcctcgacgcgcgctccctcaagcggcacgacccgctc
gagggcgcgttcgtcgacctgctcgtcggccgcgtgatcacctcggccgtccgccgcggc
aagttcatgtggctgccgctcgagcccgaaccgacgggtgaccgcaccggcccgcgcgcc
ctcgtcacccacctcggcatgagcgggcaggtgctgctccgcgagcccggctccgacccc
gacggcctgctgcggatccgcatgggcatcgagcaccccgcgcacggcgagctcgtcgtc
gcgttcgtcgaccagcggatcttcggctcgatggccgtcgaccgcctcgtcgcgacaccc
gacgggcacgcgggcggacggggatcgaccgccgcgctggtgccgacgcaggtcgcccac
atcgcgcgcgaccccctcgacccggccttcgacgacgagcagctgctgtcgcgcctcgcc
cggcggcgcacggggatcaagcgcgcgctcctcgaccagacgctcgtcagcggcatcggc
aacatctacgccgacgaggcgctgtgggccgcgcgaatccactacgcgcaccccaccgac
cagctgggtcgcggtcgcgcgctgcggctcctcgccgaggtgcgccatgtgctcgcgcgg
gcgctggccgagggcggcacgagcttcgacgcgcagtacgtcaacgtcaacggcgcgtcc
ggctacttctcgcactcgctgaacgcctacgggcagcagggcaagccctgcccgcgctgc
ggcacgcccatcgtgcgcgaggccttcatgaaccgcggctcgcacttctgcccgcgctgc
caggcgctgccggatccggacgccgcggcggcctga
DBGET
integrated database retrieval system
