Cordyceps militaris: CCM_04489
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Entry
CCM_04489 CDS
T03108
Name
(RefSeq) Ccr4-Not transcription complex subunit (NOT1), putative
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cmt
Cordyceps militaris
Pathway
cmt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCM_04489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmt03019
]
CCM_04489
Messenger RNA biogenesis [BR:
cmt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CCM_04489
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CCM_04489
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_TTP_bind
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
18166512
NCBI-ProteinID:
XP_006669700
UniProt:
G3JFC7
LinkDB
All DBs
Position
Unknown
AA seq
2173 aa
AA seq
DB search
MVPPPRAGSFSPNPAQALQTGSNHSPHPSHAGVLSAGASPSTSSPTGASSLTKIVVAQVY
LLLSTIKEDKDRAKWELQVEQLRKLIDDYGMEVFTKYFTRLVVGNAPQIFPGLNRPVANP
GNYHLLVSEMHKIAYEPEQATRIAESIESGTEDIFRDFDLSTFMEQFKLDALMKTLLALA
FKMGSRVDLKTKADAILSANFSTFVHMLELPGVHADIHPSFMAMIIDRFLQYHPPSFVAS
SRNNLRNAIITRYAALDTATPASCLAALDLARVLADKPTNALARYIQKTGADVTRDEESC
VSHLQARHGHFQLTPEQVSSALTFVTITQQPEHDPSVLVAAVRRIVPRTFDWNDVVRSFD
QPTARITSDQLLRLYKALLPVAEDPKANFDIQRLWGGTWSEPEAQLSFVSAYAALTPEQL
DATTIPNLQRSIDLDDYAKSPQNVRDRAAIAQKHPLVSVAALSGIFHAALNSVHSSQTIE
AKRLFQFVVVPNLDIFLVTAFEIPRESWAGMAAETVGTLFEQFLYKNSENWEFALDSLWR
KDKEWPGELPLIFEHAVKLKWLDTLVYLGNGFALDLAALAHAEGYVDLSKWAKYHADQGV
DISRTLIQFLLIKTNLEIASQRPDPEHNSIRAATTNLQVRTVSALLQILEDLMPKAPVPD
LIVVQRQCITAYPRLINYGEGYDDIIDANSSLGNGLPSAANNKMEEHYKRMYGDEIPVRT
IVDILERYKHSRDMLDQDVFACMIHGLFDEYNHYVDYPLEALATTAVLFGGIISHKLISD
LPLKIGLGMVLEAVRDHRPDESMYKFGLQALMQLLSRFREWPGFCKQLLQVPGLQGTDAY
KKAEEIVREHEEDLARSRGSGGTAQSLGFAGDALANGTIDDLAFPDGPTAPFSAIGIDPV
PSGAGYEDPDEDEQGKIQFVLNNITEQTLESMCMELRDMLDHKHQQWFASHLVAERAKMQ
PNYHHVYLDLVKFFEDSSLWSEVLRETYINVARMLNSEATMQNSTERTHLKNLGGWLGLL
TLARDKPIKHKNIAFKQLLIEAHDTKRLIVVIPFVCKVLLQGSTSAVFRPPNPWLMDIIY
LLIELYHHAELKLNLKFEIEVLCKGLSLDHKSIEPSGEILNRPVAEEPAAVLTVEQLEPF
EGIPLNGLGSGIGAGLSPQTVAPTIPDLSAQITIPPTNEMVVSTTRLHEIARNAVTRALH
DIIQPVVDRSVTIAAISTQQMIRKDFVSEPDENRIRLSAINMVKATAGSLAQVTSKEPLR
ANMTNYMRNLSNDLPSGLPEGTIIMCVNSNLDLACNIIEQQAEERAVPEIEDLLESDFEA
RRRYKIQHPNESSYPANINRWAMTIPYPFKLSPNMPGLNPEQMAIYEDFARQPRNTATTT
TSGANHEPSASDATRSLANEVLQEPFGNMPNIPTPAETPSLQQLGSQMQPYASLQSTAGS
MSNGRANNFPVEAHGLPERLNKLLQELLRAAGEAREEHFADLPRPHQVLDVVDALVQLLI
KTSQSSDEFPIYAAEQITGVIFQQVEDNLTLESLVHVMETLRKISGADLNSRVRALFSQQ
PGSSFLSLPLLAALTRTDLLDWRSIDLAMSKALDERKEGSLGFLEQMFDLVLLNSRPIAL
YADFVRTLEAAWNWINADSESVVGERLKAKLVGAGMYQPSQSHGNESSSRHEQMEYVFDE
WVHLCNNQNASGAAVDVFIKRLRATQVIRNKSDFLIFLRSSIDLSVERFEHLIHAGSDGY
IMIDALAKLIGVFVGMHQDSSASRASFVDSVLGITTMVLYHHQTNRGEHLNQRLFFRLFS
MLFHELQTICDQLPEMESRDIILTVARRMEPLGPFQLPGFAFGWLSLLQHRSFLPNLLSI
PEYGGWQQFTRLLRQHLDCLSEQLKALGVSSVAKEMYRATLKLLVILQHDFAEFVAAHHV
DISKSIPPHCTQLLNAVLAAQPQHGYTKVITKSKGVSEREDSKVYPGLVDDAKAILQQAG
LIEGLEEVVQGATSEGIMAQIVHSMSTGSDLETTFGHVPVSANIDVINAVVIYLGSHGAE
RLFSTEPPRLSGKEPEATVLSVLVHEVSPEARYYLVSSMINQLRYANTHTEFFSQLLLHI
FGNDLHDPEDTDIRQEITRVLLERLIGFWPQPWGLMYTVVELVKNEKYMFFDLPFIKSTP
EVAERFGNILQRV
NT seq
6522 nt
NT seq
+upstream
nt +downstream
nt
atggtccctccaccaagagcggggtcattttcgccaaatcctgcccaggctctccagacc
ggctccaatcactcccctcatccatcgcacgctggtgttctcagtgctggcgccagcccc
agcaccagcagtccgacgggggccagctccctcactaagattgttgtcgcacaagtttat
ctcctcctcagcacaatcaaggaggataaggaccgagccaagtgggaattgcaagttgaa
cagctcagaaaacttatcgatgactacggcatggaagtcttcaccaaatacttcactcga
ctagttgtcggcaatgcgccacaaatatttcctggccttaaccggccagttgccaaccct
ggcaactaccaccttcttgtcagcgagatgcacaaaattgcctacgaacctgaacaagcg
accagaattgcagagtctatcgagagcggaactgaagatatttttcgtgattttgacttg
tcgacgttcatggagcaattcaagcttgatgcgctcatgaagactctgcttgcgctggcc
ttcaaaatggggtcaagggttgatctcaagacaaaggctgacgcgattctatcggcaaac
ttcagtacctttgtgcacatgctcgagttacccggggtgcacgcagatattcacccgagc
ttcatggccatgatcatcgaccgtttcctccaataccaccctccaagctttgttgcatcc
tctcgaaacaatcttcgcaatgccattataacgcgatacgcggcgttggacacagctact
cctgcatcgtgtctggctgcattagatcttgcgcgcgttctggctgacaaacctacaaat
gcattggcgaggtatatacaaaagactggtgctgatgttactcgtgatgaagagtcctgt
gtttcgcatctgcaagcacggcacgggcatttccagctgacacccgagcaagtttcttcg
gcgctcacgtttgtgactatcacacaacaacctgagcatgatccgtcggttctggttgct
gctgttcgccgaattgtgcccagaacgtttgattggaacgatgtcgtgcggtcattcgac
cagccgactgctagaataacctctgatcaacttcttcgcttgtataaagctctcctacca
gtagccgaggatcccaaggcaaacttcgacatccagcggctgtggggtggcacatggtct
gaaccagaggctcagttatctttcgtgagtgcctatgctgccttgacgccagagcagctc
gatgcgacgacgatcccgaacctccagcgaagcatcgacctcgacgactatgcgaaatcc
ccccagaacgtacgcgacagggcagcaattgctcaaaagcacccgctggtatccgtcgcg
gctctatcaggcatcttccacgctgcgctcaattcggtccactcatcccaaacgatcgag
gccaagcgactatttcagtttgttgtggttccgaatctcgatatattccttgttaccgca
ttcgagatcccgagggagtcttgggctggtatggcggccgagaccgtcggtacattgttc
gaacaattcttatataagaattccgagaattgggagttcgcattggacagtctttggcgc
aaagataaggagtggcctggcgaattgccacttatttttgagcatgcagtcaagctcaag
tggttggacaccctggtatatttaggcaacgggttcgctcttgatctggcggctcttgct
cacgcagaaggatatgttgacctctccaaatgggccaagtaccatgcagaccaaggagtc
gacatttccagaacactgatacaatttcttttgatcaagaccaatttggaaattgcgtcg
caacgacctgaccctgagcacaatagtatcagggcagccactaccaaccttcaggtccgc
accgtatctgccttgctacagattctcgaggacttgatgccaaaagctccggtacccgat
cttattgttgtccagcgtcagtgcatcacagcttatccgcggctgatcaactatggcgaa
ggctatgacgatattatcgatgccaactcgtccctcggcaacggcctcccgtcagcagcc
aacaacaagatggaagagcactacaagagaatgtacggcgacgagattcccgttcgcacg
atcgttgatattcttgagcgatacaagcattccagggacatgctcgatcaggatgtcttc
gcctgcatgattcacgggctgttcgacgagtataatcactatgtcgactacccgctcgaa
gctctggcgaccacagcggtcctgtttggcggcatcatttctcacaagttgatttccgac
cttccattgaaaatcggtctcgggatggttttggaggctgtccgtgatcaccgaccggat
gagtcgatgtacaaatttggcttacaagctctgatgcaattactctctcgattccgagaa
tggccgggattctgcaaacagctactccaggttccaggtctacaaggcacggatgcttac
aagaaggcggaagaaatcgttcgtgagcatgaggaggatttagctcgaagtcggggcagc
ggcggcactgcccaatcgctgggcttcgctggcgatgctcttgcaaacggcactattgac
gatcttgccttccccgatgggcctacggcgccgttttcggctattggtattgaccctgtt
ccctcaggggccggatacgaagatcccgacgaggacgagcagggcaaaatccagtttgtc
ctgaacaatatcacagagcagactctcgaatccatgtgcatggagcttcgtgatatgctg
gatcacaagcatcaacaatggtttgcaagccatctggttgccgagagagcaaagatgcaa
cccaactaccaccatgtatacctagacctggtcaaattcttcgaggactcgtctctgtgg
agtgaggtgctcagggagacctatatcaacgtcgctcgcatgctcaattctgaagccacg
atgcagaactcgactgagcgaacacacttgaaaaatcttggtggttggctcggactcttg
acacttgctcgtgataagcctatcaagcacaaaaacattgccttcaaacaactgctgatt
gaagcccacgacaccaagagactcatcgttgtgatcccgttcgtctgcaaggtacttcta
caaggctctacctcggctgtgttccgtcctcccaatccttggttgatggatatcatatat
ctcctaattgaactctaccatcacgccgagctcaaactcaacctcaagttcgagattgag
gtcctctgtaagggtctcagcctcgaccataaaagcattgaaccctccggcgaaatcctc
aacaggccagttgcggaggagcctgcggccgtgctcaccgtcgagcaacttgagccattt
gaagggatacctttgaacggccttggctctggcatcggtgccgggctgtctccccaaaca
gtagcgccgactatccccgacttaagtgcgcagatcaccataccgcccacaaatgaaatg
gtggtcagtaccaccaggttgcatgaaatcgcccgaaacgctgtcacccgcgccttgcac
gatattatccagcctgttgtcgataggtcagttacaatcgctgcgatttcaacgcaacaa
atgatccgaaaagacttcgtttccgagccagatgagaaccgaattcggctctctgcgatc
aacatggtcaaagcaaccgctggaagcctcgctcaagttacttccaaggagcctcttcga
gctaacatgactaattacatgcgcaatctctcaaacgatcttccatctggtcttccggaa
ggcacgatcatcatgtgtgttaactccaacctcgatcttgcctgcaacatcattgagcag
caagctgaagagcgggctgtgccagagattgaggatcttctcgagtctgattttgaggcc
agacgccgatacaagattcagcatccaaacgagtcctcgtacccagccaacatcaaccgc
tgggcgatgaccataccttacccattcaaactgtctcccaatatgcctggactgaaccct
gagcaaatggccatctatgaggacttcgcccggcagccccggaacacggcgactacaact
acatcaggcgcaaatcatgagccctccgcctctgatgcgacgagatcgcttgccaatgaa
gtgctacaagagccctttggtaatatgcctaatattcccactcctgcagagacaccgtca
cttcagcaactcggctcgcagatgcaaccctatgcttctctccaaagcaccgcgggaagc
atgtcgaacggacgggctaacaactttcccgtggaagctcatggtctgccagagcgctta
aataagttgttgcaagaacttcttcgtgccgccggcgaggcccgtgaggagcactttgcc
gacttaccccgcccccaccaagttcttgacgttgtcgatgcgctggttcagttgctcatt
aagacgtctcagagctcagacgaatttcccatctatgctgcggagcagattactggtgta
attttccagcaggtcgaggacaaccttactctggagagtcttgttcacgttatggagact
ttacgcaagatctcgggtgccgatctgaacagccgtgtgcgcgctctatttagtcagcag
ccaggaagcagcttccttagcttgcccttacttgctgctctgacgcgcactgatcttctc
gattggagaagcatcgaccttgccatgtccaaggctctcgatgagaggaaagaggggtct
ctggggttcctggagcagatgtttgatctcgttctcctcaacagtcgccccatcgctctc
tatgctgatttcgtccgtactttggaagcagcctggaactggattaacgcggacagcgaa
tctgtcgtcggcgagagactcaaggcgaagcttgtcggtgctggtatgtaccagccatca
caaagccacggtaacgagtcttcgtctagacacgaacaaatggaatatgtctttgacgaa
tgggtgcatttgtgtaacaaccagaatgcatcgggcgcagcagtcgatgtcttcatcaag
cggctacgcgccacccaggttattcgcaacaagtctgatttcttaatcttcctccgcagc
agcattgacttgtccgttgaacgctttgagcatttgatccatgccggcagtgatggttac
atcatgattgatgctctcgcgaagctcattggcgtgtttgtcggcatgcatcaggacagc
agtgcaagccgtgcgtcatttgtcgactcggtgcttggcatcaccactatggtgttgtat
catcaccaaacgaatcgcggggaacacctcaatcagagactcttcttccgcctgttctct
atgctctttcacgaactacaaaccatctgcgatcagctacccgagatggagtcgagagat
attattctgactgttgcccgcagaatggagccgctcggtcctttccagttgcccggcttt
gctttcggctggctctcgcttctgcagcaccgatctttcctaccaaatttactgtcgatt
cctgaatacggaggatggcagcagtttaccagactcctgcgccagcatttggattgtctg
agcgagcagcttaaggccttgggtgtgtcatccgttgccaaggagatgtaccgagctacg
ctcaaacttcttgtcattcttcagcatgactttgccgagtttgttgcggcgcatcatgtg
gatatttccaagagcatcccaccccactgcacccagttgcttaacgctgttctcgcagct
cagccgcagcatggttacaccaaggtgatcaccaaaagcaagggtgttagtgagcgcgaa
gattcgaaggtctacccggggcttgttgatgatgccaaggccattttgcaacaagcaggg
ctcattgagggcctcgaggaagttgtccaaggcgccacctcggagggtatcatggcgcag
attgtgcacagcatgagcactggatcggatcttgaaaccacctttggtcatgttccagtc
tccgccaacatcgatgtcatcaacgctgttgtcatttatcttggtagtcatggagcagaa
cgattattttccaccgagccgccgaggctcagcggcaaggagccggaagctacggtcttg
tccgtgcttgttcacgaggtatctccagaggctagatactatctggtgtcgagcatgatc
aatcagcttcgatacgccaacacgcacactgagttcttcagccaactattgctccacata
ttcggcaatgacctgcatgatccggaagacacagacatccgccaagagattacaagagtc
ttgctcgaaagactgatcggattctggccacagccatggggactgatgtacacggtcgtt
gagctagtaaagaacgagaaatacatgttcttcgacctgccattcatcaagtctactcca
gaggtggcggaacgatttggcaatattcttcagcgggtttag
DBGET
integrated database retrieval system
