KEGG   Chlamydia muridarum Nigg: TC_0899
Entry
TC_0899           CDS       T00028                                 
Name
(GenBank) RNA polymerase sigma factor, sigma-54 family
  KO
K03092  RNA polymerase sigma-54 factor
Organism
cmu  Chlamydia muridarum Nigg
Pathway
cmu02020  Two-component system
cmu02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:cmu00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    TC_0899
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    TC_0899
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cmu03021]
    TC_0899
Transcription machinery [BR:cmu03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     TC_0899
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_36 DUF4363 HTH_11
Other DBs
NCBI-ProteinID: AAF73614
UniProt: Q9PJD0
LinkDB
Position
1042096..1043376
AA seq 426 aa
MLHQHQTASVALCPALHIQQSLDMLQMPVAELSEFLSQQITINPCFDLDALDDLPDTCSF
FPISEHHPFTETLLSHLLHQIEVHFSLPQDRAIAQYIVGNLSPEGLFLEDPSLSASNLGV
SDVLFQKIWLRIQQFHPLGIASSSLQSYWLSLLDPSSHKEALMIIRQHFNRLARCDFAGI
SKKIQLPIAKILVFLRQALASIPWCPAAGFPNSLKTPSPALPDAYLSFSHEKSWEIFMNK
DSLPAIRLNSTVLHIYHTLPRDDKDHLSQQIRAAKQLLRNIKKREETLLAVLRVLIPYQE
EFLLKKRSVPKAFSVKQLARELSLHETTICRAINNKTLATPIGLISMRSLFPQAVGACPD
QSKATILHWIHQWISTEKNPLSDEAISQKIIAKGIPCARRTVAKYRSQLNIPPAHQRKHV
NASLVP
NT seq 1281 nt   +upstreamnt  +downstreamnt
atgttgcatcagcatcaaacagcatctgtagctctttgtcctgctttacatattcaacaa
agtttggacatgctacagatgccggttgctgaactctcggaattcttatctcaacaaatc
actatcaatccttgtttcgatctcgatgccctggacgatcttccagacacatgttccttt
ttccctattagtgagcaccatcctttcacagagaccctattatcccatctacttcaccaa
atagaggtacatttttctctccctcaagaccgtgctatagcccaatacatcgtagggaat
ctttctcctgaaggactctttttggaagatccctctctctcggcttcaaatttaggagtt
tctgatgtcctttttcaaaaaatatggctacgcatccaacaatttcatcccctaggaatt
gcctcatcttctcttcaatcctattggctatctttactagatccttcttcgcataaagaa
gctttaatgattatccgacagcactttaatcgattagctcgttgtgattttgccggcatt
tctaagaaaattcagctgcccatagcaaagattcttgtatttcttagacaagctctagct
tccatcccctggtgtccagcagctggatttcctaattcacttaaaactccttctccagcg
cttcctgatgcctatctttctttctcacacgaaaaatcttgggaaatctttatgaacaaa
gattctcttccagctattagacttaatagtacggtgcttcatatttaccacaccctcccc
cgtgatgataaagaccacttatcacaacaaattcgtgctgcaaaacagctgcttcgcaat
ataaaaaaacgtgaagaaactttattagcagtccttcgcgttttaattccttatcaggag
gaattccttcttaaaaaacgttctgttccgaaagctttttcagtaaaacaactagctcgc
gaactctctcttcatgaaaccactatttgtcgggcaatcaataataagacgctcgcaaca
cctatcggattgatttctatgcggtcgctatttccacaagctgttggagcttgtcctgat
caatctaaagctactattttacattggatacatcagtggatatctacagaaaaaaatcct
ctatctgacgaggctattagccaaaaaattattgcgaaaggaattccttgtgcacgccgt
acagtagcaaaatatcggtctcaactaaacatccccccagcgcatcagcgtaaacatgtg
aatgcttctctagtgccataa

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