Chelonia mydas (green sea turtle): 102930417
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Entry
102930417 CDS
T02989
Symbol
WHRN
Name
(RefSeq) whirlin isoform X1
KO
K21879
whirlin
Organism
cmy
Chelonia mydas (green sea turtle)
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cmy03037
]
102930417 (WHRN)
Cilium and associated proteins [BR:
cmy03037
]
Primary cilia and associated proteins
USH complex and associated proteins
102930417 (WHRN)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
HHD_RTEL1
USH1C_N
DUF6288
CCM2_C
Motif
Other DBs
NCBI-GeneID:
102930417
NCBI-ProteinID:
XP_037735846
LinkDB
All DBs
Position
16:complement(7900463..8008213)
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AA seq
975 aa
AA seq
DB search
MRCLGGAHRPPAQGSGEMSAELDRTSVNSSCSSSPGPAAAAAAGTPSGAGSRLLSANVRK
LHHALTLLLSEPEREQFIHCLNVYHARRNVFDLVQTLRVLLDSPGKRQLLPMLRLVIPRS
DQLLFDQYTSEGLYLKPGFLPGCGAAGLGAPSPPAAGVWPQPAPLPPARRAPAGLGAPAA
EELRGEVREVSLKRNKTNDGLGFSIRGGAEHGVGIYVSLVEPGSLAEKEGLRVGDQILRA
NDKALDRVTHAEAVKALKGSKKLNLSVHSVGRIPGGYVTNHIYTWVDPQGRSASPPMGLP
QHQSSSLRKDGEKRSHLQLLQEGDEKKVNLVLNEGKSLGLMIRGGAEYALGIYITGVDKG
SEAESTGLKVGDQILEVNGRSFLSIPHDEAVKLLKSSRHLIMTVKDIGRLPHARTTVDET
QWIASSQIGETPVNTAGAAGDHTAEATAKPVFYRGLAGSQVTLSSLVNQTRVMLEAQARH
LLNEQERATMAYYLDEYKETNISVDSLVMALFELLNTHAKFSLLSEVRGVIAPQDLDRFN
TLVLKREIESMKARQPSVPSADSYSMTSYSDAGSSTCSHFTSTTVSSARERLLWLIDLME
NTADLEGGGEGLQSSINALPDISLDDVSSFPEEPPSFKPPPPPPAQELDSSTAQLAKVTP
KRPSSESSQSGLFFVAPPSPTPPPSHPDKDTASMTSTSASVSTEDSALSPVYAAVSPATL
SSGRHMGAHLSLVNQHPIGPFPRVQSPTRLKSPSPESTPVSSLPMPVPPPPASYPEPDKG
SLQSAINQHFVMVEVHRPNSEPDVNEVRSLPQARASTLSQLSDSGQTLSEDSGVDIGEVE
LSGRDKTQQQIPGKSRGPKEAPRSDGPAEAASKPPGLLEPTSCLIRVVKSAPTLGIAIEG
GANTRQPLPRIVTIQRGGSAHNCGKLKVGHVILEVNGTTLRGKEHREAARVIAEAFKTKE
KDHIDFLVTEFNVAL
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgcgctgcctgggaggcgcacaccggccccccgcccagggcagcggggagatgagcgcc
gagctggaccgcacgtcggtgaactcctcctgctccagctccccgggcccggcggcggcg
gcggcggcggggaccccgtcgggggctgggagccggctgctctcggccaacgtgcggaag
ctgcaccatgccctgaccctgctgctgagcgagccggagcgggagcagttcatccactgc
ctgaacgtctaccacgcccgccgcaacgtcttcgacctggtgcagaccctccgcgtcctg
ctcgacagcccgggcaagcggcagctgctgcccatgctgcgcctggtgatcccccgctcc
gaccagctgctcttcgaccagtacacctcggaggggctctacctgaagcccggcttcctg
cccggctgcggcgcggcgggcttgggggcccccagcccacccgcggctggtgtctggccc
cagcccgctcctctgccccctgccaggagagccccggcggggctgggcgcccccgccgcc
gaggagctgcgtggggaggtgcgggaggtgagcctgaagaggaacaagaccaacgacggc
ttgggcttcagcatccgagggggcgccgagcacggggtgggcatctacgtctccttggtg
gagccgggctccctggcggagaaagaagggctccgggtcggggaccagatcctgagggcc
aacgacaaggccttggacagagtgacccacgccgaagctgtcaaggctctgaaaggctcc
aagaagctgaacctgtcagttcattcagttgggcggatccctgggggctatgtcaccaat
cacatttacacctgggtggatccccaggggcggagcgcgtccccgcccatgggcctgcct
cagcaccagagcagctccctgcggaaggacggcgagaagaggagtcacctgcagcttctg
caagagggggatgagaaaaaggtgaacctggtgctgaacgaagggaagtccttgggcctc
atgatccgaggaggagcagaatacgcgctgggcatttacatcaccggcgtggataagggc
tcggaagcggagagcaccggcctgaaggtgggagatcagatcctggaggtgaacggcaga
agcttcctcagcatcccccacgacgaggcggtgaagttgctgaagtcttcacggcacctc
atcatgaccgtgaaggacattggaaggctgccgcacgcccgcaccactgtggatgagacc
cagtggatcgcgagctcccagatcggagagaccccggtgaacacagcaggggcagctggt
gatcacacagccgaggcaacggcaaagcccgtgttttacaggggcctggctggctcccag
gtgacgctgagcagcctggtgaaccagacccgcgtcatgctagaggcgcaagctcgccac
cttctgaatgaacaggagcgggcgaccatggcctactacctggacgaatacaaggagacc
aacatttctgttgactccctcgtcatggctctcttcgagctactcaacacacacgccaag
ttctcgctgctatctgaggtgaggggggtgatagcccctcaggacctcgatcgcttcaat
accctggttctgaagcgggagatcgagtccatgaaggcccgacagccctcggtgcccagt
gccgactcctactccatgacgtcctacagcgacgccggctcctccacttgcagccacttc
acctccaccacggtcagctcggctcgggagcggctcttgtggctaatagacctgatggag
aacaccgcagacctggagggaggcggagagggactccaaagcagtattaatgccctgccg
gacatctccctggacgatgtttcgtctttccctgaggaaccgcccagctttaagccccca
cctcctcctccggctcaagagctggactcctccactgcccagctcgcgaaagtcacaccc
aagcgcccttcctctgaatcctcccagtcaggcctcttcttcgtggcccctcccagcccc
accccacctcccagccaccccgacaaggacacagccagcatgacttccacctcggcctct
gtgtccactgaggattctgccttgagtcccgtctatgccgccgtttcccctgccactctc
agctccgggaggcacatgggtgcccacttgtccttggtcaaccagcacccgataggcccc
ttcccccgagttcagtctccaaccaggctgaagagcccatctcctgagagcaccccagtc
agtagcctcccaatgcctgttcctccccctcccgcatcgtatccggagccagacaaaggc
agcctgcagtcagcgatcaaccagcacttcgtcatggtggaggtgcatcggcccaacagc
gagccggacgtgaatgaagtgagatccttgccccaagcccgagcctccacgctctcccag
ctgtcggacagcgggcagaccctcagcgaggacagcggggtggacatcggcgaagtggag
ctgagcggcagggacaagacccagcagcagatccctgggaaaagccgaggtcccaaggag
gcaccgagaagcgatgggccagcagaggcagcctccaaaccgcctggccttctggagccc
acatcgtgtctgattcgagtggtgaagagcgcgccgaccctggggatcgccatcgagggc
ggcgccaacacccggcagcctctgccccggatagtcaccatacagcgaggaggatctgcc
cacaactgcgggaagctgaaggtgggacacgtgatcctggaggtgaacggcacaacgctg
cggggaaaggagcaccgggaagccgcgcgtgtcatcgctgaggcctttaaaacaaaagag
aaggaccacatcgatttcctagtcactgagttcaacgtcgcactttag
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