Chelonia mydas (green sea turtle): 102934458
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Entry
102934458 CDS
T02989
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
cmy
Chelonia mydas (green sea turtle)
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cmy00536
]
102934458 (COL13A1)
Glycosaminoglycan binding proteins [BR:
cmy00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102934458 (COL13A1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
102934458
NCBI-ProteinID:
XP_043406631
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All DBs
Position
7:81069389..81222646
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AA seq
802 aa
AA seq
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MLEEKGWKGASNGAFDRGCIAPPRTGDGERCCRFPLLLGSGLPGVSLISLVLSLLLYFRT
SDLQSRVSHLEADRCIQLPAWLSADQMETAILGRVDQLLDEKLKFNLPRHREVRDTHQRC
NCPAGPPGPTGRPGLPGDKGAMGIPGRTGLKGQPGEKGTPGEAGMSIIGPRGPPGQPGTR
GFPGFPGPIGLDGKPGHPGQKGEMGVAGPKGQPGPTGQKGEKGQCGDYPHRLLPLLNSVR
LAPPPVIKRRTFQGEQGQAGIQGPPGPPGPPGPTGPSGPAGNPGQPGLVGPPGKAGEPGK
AGKDGKGLPGPPGPKGDPGIQGYHGRKGEVGEAGLPGAPGLPGPIGPKGEKGDTGMKGER
GMPGLPGKHGAKGVPGMATAGMKGEPGVAGMMGPPGLPGKRGQRGEKGRAGDPGLPGFLG
QKGEKGDAGNSLGGGKGEPGPPGLPGPPGPKGEAGDIGQTGIAGPQGKKGEPGAPGEQGP
VGPRGPKGEPGKDEIVDYDGNINEALQEIRTLALMGPPGLPGVAGTPGLPGQKGEIGLPG
PPGHDGEKGPRGKSGEVGPPGPQGPPGKEGPPGVKGETGLTGTPGAKGEKGEAGEAGSPG
LDGPNGEKGERGDQGIPGPSGLPGLIGLPGLTGEKGEPGEDGEKGDAGDSVSGPPGPQGP
PGAAGLQGLPGPKGEAGIDGMKGEKGVEGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGA
PGPAGPKGERGSKGDPGNAGPKGPAGLPGLQGPSGDKGNRGERGKKGSRGPKGDKGDQGA
PGLDAPCPLGDDGLPVQGCWNK
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgttggaggagaagggctggaaaggtgctagcaatggtgcctttgacagagggtgcatc
gctccccccaggacaggggatggagaaagatgctgcaggtttcctctactgctgggctct
gggcttcctggggtgtctttgatttctctggtgttgagcctcctgctatactttaggaca
tcagacctgcaatccagggtttcacatttggaagcagacagatgcattcagctccctgcc
tggctctctgcagaccaaatggagacagctattttgggaagagttgaccaactgcttgat
gagaaattaaagttcaacttgccgagacatcgagaagttcgagatacccaccagaggtgc
aactgcccagcagggcctcctggccctacaggaagaccagggcttccgggagacaaaggc
gccatggggatccctggaagaacgggactaaaggggcaacccggagagaagggaacccct
ggagaagcaggcatgtccatcatcggtccccgaggccctccaggacagcctggaacaaga
ggttttcctggatttccgggcccaattggtttggatggcaaacctggccatcctggacag
aagggggagatgggtgttgctggtcccaagggacagccgggacctacaggacaaaaagga
gaaaagggccagtgtggagactacccacacaggctgttgcctctcctcaattcagtgcgg
ctggctccacccccggtcataaagagacgcactttccagggtgaacaaggacaggcgggg
attcaaggtccaccagggccacctggtccaccagggccaactggaccatctggaccagca
ggaaatccaggacaacctggcctagttgggccaccaggcaaagcaggggagcctggaaag
gcaggcaaggatggaaagggtttacctggaccccctggaccaaagggagaccctggaatt
caaggataccatgggaggaagggtgaggtgggtgaggctggcctaccaggtgcacctggc
cttcctggacctattggccccaagggtgaaaagggggacactggcatgaagggggagagg
ggcatgccagggctgccaggaaaacatggagctaagggggttcctggaatggctactgca
gggatgaagggagaacctggagttgcagggatgatgggccccccaggtttgccagggaaa
aggggacagaggggggagaagggaagagctggtgatcccggacttcctggattcctagga
cagaagggagagaagggagatgctggcaattcactcgggggaggtaaaggggaacccgga
cccccgggactacctgggcctccaggaccaaagggggaagctggtgacattggccagact
ggcattgcaggaccgcaggggaaaaagggagaacctggagcacctggagaacaggggcct
gttggtccaaggggtcccaaaggggagccaggaaaggacgaaattgtggattatgatggt
aacatcaacgaagctctacaggaaatacgaacgttggccctgatgggacctcctggactt
ccaggagtagctgggaccccagggctaccaggacagaagggtgaaattggtttgccgggt
cctcctggacacgatggagagaaggggccacgaggtaaatcaggagaggtggggcctcct
ggtccccaagggcccccaggaaaggagggacctccaggagtgaagggagagactggactt
acggggaccccaggagcaaagggggaaaagggggaggcaggagaagctggctctccgggt
cttgatggcccaaatggggagaaaggagaacgaggtgaccaagggataccaggaccttca
ggattaccaggtctaattggacttccaggattgacaggagagaaaggagaacctggtgag
gatggggaaaaaggagacgcaggggactcagtatcagggccacccgggccccaaggccca
ccaggtgctgcaggtcttcaaggccttccaggaccgaagggggaagcggggattgatgga
atgaaaggagagaagggtgtcgagggtgagaaaggagaccgaggtccactgggattgccc
ggtgcttcaggtttagacggcaggcctggaccaccgggtactccaggaccaattggagct
ccaggaccagcaggaccaaaaggggaaaggggcagtaaaggagaccctggaaatgcagga
ccaaaggggccagctgggcttcctggtttacaaggcccatctggtgacaaaggaaaccgg
ggggagaggggcaagaaaggctctagagggcctaaaggggataagggagaccaaggagcg
cctggattagatgcaccctgtccattgggagatgacggcttgccagttcagggctgctgg
aataagtga
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