KEGG   Cryptococcus deneoformans JEC21: CNE03620
Entry
CNE03620          CDS       T00243                                 
Name
(RefSeq) Exonuclease II, putative
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
cne  Cryptococcus deneoformans JEC21
Pathway
cne03008  Ribosome biogenesis in eukaryotes
cne03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cne00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    CNE03620
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CNE03620
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cne03019]
    CNE03620
   03009 Ribosome biogenesis [BR:cne03009]
    CNE03620
   03016 Transfer RNA biogenesis [BR:cne03016]
    CNE03620
   03036 Chromosome and associated proteins [BR:cne03036]
    CNE03620
Messenger RNA biogenesis [BR:cne03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     CNE03620
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     CNE03620
Ribosome biogenesis [BR:cne03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    CNE03620
Transfer RNA biogenesis [BR:cne03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    CNE03620
Chromosome and associated proteins [BR:cne03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    CNE03620
SSDB
Motif
Pfam: XRN_N XRN_M XRN1_D1 XRN1_D2_D3 SH3_12
Other DBs
NCBI-GeneID: 3257877
NCBI-ProteinID: XP_024512894
UniProt: Q5KGH2
LinkDB
Position
5:complement(join(1024355..1025398,1025463..1025939,1025995..1026132,1026187..1026305,1026355..1026993,1027047..1027191,1027244..1027365,1027421..1027574,1027626..1028062,1028111..1028290,1028340..1028584,1028630..1028829,1028875..1028984,1029036..1029339,1029387..1029396,1029454..1029536,1029595..1029605,1029657..1029660))
AA seq 1473 aa
MGIPKFFRWISERYPLTSQLITPNSIPTFDNLYLDMNGIIHNCSHPPSTENDPHFRITEE
QMILAIFAYIDHLFTKIKPQKVFFMAIDGVAPRAKMNQQRSRRFRAGKDARDQREKAEKN
GEKLPDEKAFDSNAITPGTPFMARLSQHLKYYVRKRISEDADWRSIRVILSGHDVPGEGE
HKIQEFIRLNKAQPDYNPNTRHCLYGLDADLIMLGLLSHDPHFCLLREEVTFGRKSRQNT
ELANTNFFLLHLSLMREYLDLEFSSLQTQISFEYDLERIIDDFILMAIFVGNDFLPHLPD
LHINEGALERIWGMYKDILPTIDGYINEHGTISLPRLQLLLDKLAEFEVKRFEDDLLDQV
HFSGNHTRDTMVIEKARKKNRKVITKYQQKVLNQLRSFIEKQQNQPNPTHRLELINTQDK
RDNAFVQELADELHLHTTWDEVDDYGQSLIVCTFNMEGVSQDGSADGKEEDGDWESDEME
DEGKLAVQRVFRNWSKAAVVDTYPEDVEKSMDEKLKEAMDDIKRQYYHDKLEINYNDPAQ
MQDLVHHYIEGLQWILNYYYKGVSSWGWFYKYHYSPRITDLKGVADMKFEFDYGKPFTPF
QQLMGVLPVDSMDHVPLAYRDLMYEETSPIIDFYPRNFELDMNGKKQDWEAVVKIPFIDQ
NRLLKAMAARDVRLTPEERERNKSGVLSTQFVYDPEIDENYPSSFPGVFPELTRSHCRAS
PFNLPVLGGDVQLIFGLVEGVQLGVSALAGFPSLDTLPHNGTLDYHGVNVFQSDSKNPSM
VITIIGKDELPKTSEIARNVLGQRTFHSWPYLQEGIVAAVSDDMFKYTLQQVGKSLRVVH
MPHQDAVKWRRQADHVERHYSRRYGVIIGGVEVLLHIRPLKGLKHLDNGALVKDYETPEK
EIVQAYQVAVSQVTFEDERFLERAPPDLKVDFPVGEKVLFLGDMHYGLAAQVSAVNEEAQ
TLSVILAYFEEETEETLRFMKAVAHRPAGKWWPSPILSRRLGISALALSRITSTLLVQLG
DGSKTNIGLSLKFESRGLKVLGYSKRNDRGWEFSEKTAQVLEAYKKAFPEVFKHLENRGG
DLVKSKELCPTAEDPDTVIKGMKKWLKDEGLNDLESVSLFADQLEAETCQIVEKLADDIL
SKKTFQSIKKKRLDNVPRQTLLKPAQAIYRLQGQVFEPGHRVVMVQDPAAGGVPTGMRGV
VVGLGMRTVDVIWDNGFMGGSTLQGKCSPYRGSTVPFSSCLNLTRPQFTVSERAGPKPVP
QNVFRPQLGPRPAVPMQHYQPSVPGRQQTATTTHHILQKPKTVHSTQSTTVVGSNGHLKY
SGVAKGVRPQPVQQQPVSHRDQLSNLLGGLRLGPGPVVNDNRDSSHVTHVQAQGNLPVVH
SHASVHQAIPTNPPIRGKAQNMNNKSGIGAVRGRGAANGAPFAHRGTHNGVPASARGGAP
NGGPRGRGGFRGGSRGFTRGRGVGSGGSAVVEE
NT seq 4422 nt   +upstreamnt  +downstreamnt
atgggtatcccaaagttcttcagatggatctcagagaggtatcctcttacctctcagttg
atcacacccaactctatccccacgttcgataatctctatctggatatgaacggtatcatt
cacaactgttctcaccccccatcgactgagaacgacccgcattttcgaatcacggaggag
cagatgattttggccattttcgcctatatcgaccatcttttcaccaaaataaaacctcaa
aaagtatttttcatggctattgacggtgtagctcctcgagcaaagatgaaccagcagcgt
agccgaaggttcagggccggtaaggacgctagggaccaaagggaaaaggcggagaagaat
ggagaaaagctgcctgatgaaaaggcatttgactccaatgccattacgccaggtacacct
tttatggcgaggctgtcgcaacacctcaagtactatgtgcgaaaaagaatttctgaagac
gccgattggcgcagcatcagagttattcttagcggtcacgatgtccccggagagggtgaa
cacaagatccaagaattcatccgactgaacaaggctcagccggattacaaccctaacacc
aggcattgcctctacggtcttgatgccgatctgataatgttgggtctattgagccatgac
ccccatttctgtcttttgcgtgaggaagtgacgtttggacggaagtctagacagaacacc
gaacttgcgaacactaattttttcctactccatctttccctcatgcgagaatatctcgac
cttgaattctcgtccctccagactcagatctccttcgagtacgacctcgagcgtatcatt
gatgatttcattctaatggcaatctttgttgggaatgatttcttgcctcatttgccggat
ttacatatcaacgaaggtgccttggaaagaatctgggggatgtataaagacattttgccc
acaattgacggatacattaacgagcatggcacaatttcattgccaagactccaacttttg
ctcgacaaattggccgaatttgaggtcaagaggtttgaagatgacctcctggaccaggtt
cacttttctggaaaccacactagagacactatggtgattgagaaggctagaaagaagaac
cgcaaggtcatcaccaaatatcaacaaaaagtactgaaccagttacgcagttttatcgag
aagcagcaaaatcaacccaatcccactcaccgacttgagctcatcaacactcaggacaag
cgtgataacgctttcgtccaagagcttgccgacgagttacacctgcacacgacatgggac
gaagttgacgattatggtcaatccttgatcgtctgcactttcaacatggaaggtgtgagc
caagatggaagtgcggacggcaaagaggaagatggagattgggaaagcgatgaaatggag
gatgaaggcaagctagcagttcagagagttttccgtaactggagcaaagctgcagtcgtc
gatacgtatccggaagatgttgagaagtcgatggacgagaaactgaaggaagccatggat
gatataaagaggcaatattatcacgataaacttgagatcaactacaacgacccagctcaa
atgcaggaccttgtacaccactatattgaaggtcttcaatggatcctcaactattactac
aagggcgtttcaagctggggctggttctacaaatatcactactctccccgtatcactgat
ttgaagggagttgctgatatgaagtttgaatttgactatggcaaacccttcactcctttc
caacaacttatgggtgttttgcctgtagatagtatggatcatgttccattggcatacaga
gacctcatgtatgaggaaacctccccgatcatcgacttttatccccggaactttgaattg
gatatgaatggcaaaaagcaggattgggaggctgtggtaaagatcccattcatcgatcaa
aacaggttgttgaaggccatggccgctcgtgatgttcgtctcactcccgaggagagagag
cggaacaagagcggtgtgctcagtactcaatttgtttacgatcctgagatcgatgaaaat
tacccatcatctttcccgggtgttttccctgagctcactcgaagccattgccgtgcttcc
ccatttaatctcccagtccttggtggcgacgtccagctcatctttggtctagttgaaggt
gttcaacttggtgtttccgcgcttgctggtttcccatctctcgacactcttccccacaat
ggtacccttgactaccatggtgtcaacgtcttccagtctgatagtaagaatccttctatg
gtgatcaccatcattggcaaagatgaacttcccaagacttctgagatagctcgaaacgtt
ctcggccaaaggaccttccactcttggccttatctccaggaaggtatcgtcgctgctgtt
tcagatgatatgttcaagtacaccttgcagcaagttggcaagtctcttcgagttgtacat
atgccccatcaggatgcggtcaaatggaggcgacaggcagaccatgtggagaggcattat
tcaaggaggtacggcgtgattattgggggtgtggaagtattgttgcatatcagaccgctt
aagggcttgaaacacctcgataacggtgcacttgtcaaggactacgaaaccccagaaaag
gagatcgtccaagcgtaccaggtggctgtctcacaggtcacatttgaagatgaacgtttc
ctggaacgagctccgcctgacttgaaggttgacttccctgttggagaaaaagttcttttc
ctcggtgatatgcattacggtctcgcagcgcaggtctcggcggtcaatgaggaagctcag
acgttaagcgtgattcttgcatactttgaagaggaaacggaggaaaccctcagattcatg
aaggctgtcgcccatcgacctgcgggcaagtggtggccttcaccaatcctatcccgtcgt
cttggtatctccgccctcgctctttctcgcatcacgtctactttgctcgttcaactcggt
gatggctcgaagaccaatattggactttcgctcaagtttgagtctcgcggtcttaaggtt
ctcggttactcgaagagaaacgatcgaggctgggagttcagcgagaagactgctcaagtg
ctggaggcgtacaagaaggctttccctgaggtgttcaagcatctggagaacaggggagga
gacctggtcaaaagcaaggaactttgccccactgcggaggaccctgatactgttatcaag
ggcatgaagaagtggttgaaggatgaaggactgaatgatttggaatccgtgtcgttgttt
gccgatcagcttgaagcggaaacctgccagatagttgaaaaacttgccgacgacattttg
tctaagaaaaccttccaatcgatcaagaagaagcgtttggacaatgttccacgccagacc
cttttgaagcccgcacaagccatttatcgacttcaaggtcaagtttttgaacctggccac
cgagtcgttatggtgcaggaccccgccgcgggaggggtgccaacaggcatgaggggtgtt
gtggtcggtcttggaatgaggaccgttgatgtaatctgggacaatggcttcatgggtggt
tctactctccaggggaagtgttcgccttaccgcgggtcaactgtaccattctcgtcctgc
ctcaatttaactcgtccccaattcactgtctccgagagagctggaccgaagcctgttcct
caaaatgtcttcagacctcaacttggacctcgccctgctgtacctatgcagcattaccag
ccgtcggtgccgggccgtcagcaaactgcgacaactacacatcacattttgcagaaaccc
aagactgttcactctactcaaagcaccactgttgtcggtagcaacggccatctgaagtat
agcggcgtggcgaagggtgtccgacctcagcctgttcagcaacagcccgttagtcaccga
gatcaattgtccaacttgcttggaggtttgcgactgggccctggtcctgtggtcaatgac
aatcgtgattccagtcacgtcactcacgttcaggctcagggaaaccttccggtggtccat
tcccatgcttccgttcaccaggcaatacctaccaatccccctattcgaggaaaggcacaa
aacatgaacaacaagtctggtatcggtgccgtcaggggaagaggtgctgcgaacggcgcc
cccttcgctcatcggggtacccacaatggtgttcctgcgtccgctcgcggaggcgctcca
aacggtggaccaaggggaagagggggtttcaggggtggttcaagaggattcactagaggc
aggggggttggaagtggcggtagcgcagtagttgaggagtag

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