KEGG   Caloenas nicobarica (Nicobar pigeon): 135990563
Entry
135990563         CDS       T11056                                 
Symbol
COL6A1
Name
(RefSeq) collagen alpha-1(VI) chain
  KO
K06238  collagen type VI alpha
Organism
cnic  Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic04510  Focal adhesion
cnic04512  ECM-receptor interaction
cnic04518  Integrin signaling
cnic04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cnic00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    135990563 (COL6A1)
   04518 Integrin signaling
    135990563 (COL6A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    135990563 (COL6A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    135990563 (COL6A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cnic04147]
    135990563 (COL6A1)
   00536 Glycosaminoglycan binding proteins [BR:cnic00536]
    135990563 (COL6A1)
Exosome [BR:cnic04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   135990563 (COL6A1)
Glycosaminoglycan binding proteins [BR:cnic00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   135990563 (COL6A1)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   135990563 (COL6A1)
SSDB
Motif
Pfam: VWA Collagen VWA_2 DUF1194 vWA-TerF-like
Other DBs
NCBI-GeneID: 135990563
NCBI-ProteinID: XP_065494406
LinkDB
Position
6:complement(6169781..6194585)
AA seq 1023 aa
MRLRDFLFTLLCLAGFLVGGSWAQRPEITTRVANAEDCPVDLFFVLDTSESVALRVKPFG
DLVAQVKDFTNRFIDKLTNRYYRCDRNLVWNAGALHYSDEVVLIKSLTSMPSGRNELKNS
VSAVNYIGKGTYTDCAIKRGIEELLIGGSHHKENKYLIVVTDGHPLEGYKEPCGGLDDAA
NEAKHLGIKVFSVAISPNHLDQRLNIIATDHAYRRNFTATSLKPTRELDVEETINTIIDM
IKANTEQSCCSFECQPPRGPPGPPGDPGNEGERGKPGLPGEKGEAGDPGRPGDMGPVGYQ
GMKGDKGSRGEKGSRGAKGAKGEKGRRGIDGIDGMKGEAGYPGLPGCKGSPGFDGAQGPP
GPKGDPGAYGPKGGKGEPGDDGKPGRQGIPGSPGEKGAPGNQGEPGPAGETGDEGAPGAD
GPPGERGSNGERGPPGSPGDRGPRGEPGEPGPPGDQGREGPLGPPGDQGEAGPPGPKGYR
GDDGPRGSEGPKGLPGAPGLPGDPGLMGERGEDGPSGNGTVGFPGAPGQQGDRGDPGING
TKGYVGPKGDEGEAGDPGNDNPTPGPRGIKGAKGHRGPEGRPGPPGPVGPPGPDECEILD
IIMKMCSCCECTCGPVDLLFVLDSSESIGLQNFQIAKDFIIKVIDRLSKDERVKFEPGES
RVGVVQYSHDNTQELVAMGDANIDNIGALKQAVKNLKWIAGGTYTGEALQFTRENLLRRF
TSDKRVAIVITDGRSDTLRDPTPLNSLCDVTPVVSLGIGDIFRNPPNPDHLNDIACLSRP
TRPGLSIQRDNYAELLDDTFLQNITSYVCQEKKCPDYTCPITFTGLADITLLVDSSTSVG
SKNFETTKKFVKRLAERFLEASKPADDSVRVSVVQYSGRNQQKVEAQFQHNYTVIAKAID
NMEYINDATDVNAALRYVTGLYQRSSRAGAKKRVLLFSDGNSQGITARAIERAVQEAQQA
GIEIYVLAVGSQANEPNIRVLVTGKSADYDVAYGERHLFRVPDYTSLLRGVFYQTVSRKI
AVD
NT seq 3072 nt   +upstreamnt  +downstreamnt
atgaggctgcgagactttctgttcactttgctgtgcctggccggcttcctggtggggggc
tcgtgggctcagcgcccagaaatcaccacccgggtcgcaaatgcggaagactgccccgtg
gacctgttcttcgtcctggacacctctgagagtgttgccctgagagtgaagccctttggg
gacctggttgcccaagtgaaagatttcaccaaccggttcattgataagctgacaaacagg
tactaccgctgcgaccgcaacctggtgtggaatgccggggcgctgcactacagcgatgag
gtcgtgctcatcaaaagcctcacctcgatgcccagcggccggaacgagctgaaaaacagc
gtctcggctgttaactacatcgggaagggcacctacactgactgcgccataaagcgaggc
atcgaggagctgctcattggtggctcccatcacaaggagaataaatacttgattgtggtg
actgatggacaccccttggaagggtacaaggagccctgtggaggcctggatgatgctgcc
aatgaagccaaacatttggggatcaaagttttctctgttgccatctcccccaaccacctg
gaccagcggctcaacatcattgccacagaccatgcctaccgccgcaacttcaccgccacc
agcctgaagccaacccgggagcttgatgtggaggaaaccatcaacaccatcatcgacatg
attaaagctaacacagagcaatcgtgctgctccttcgagtgccagcctccccgagggccc
cctggacctcctggtgacccaggcaatgagggagaaagaggcaagccaggtcttcctggc
gagaaaggagaggctggagaccccggcaggccaggagacatgggacctgttggctaccaa
ggaatgaagggtgacaaaggaagtcgaggagaaaagggctctagaggagccaaaggagcc
aagggtgagaaaggcaggcgtggaatcgatggcattgatggcatgaagggtgaagctgga
taccccgggttacctggctgcaaaggctcacctggatttgatggagctcaaggcccgcct
ggaccgaagggagatcctggtgcttacggacccaagggtggaaagggggagcctggagac
gacggaaaacctggccggcagggcattcccggcagccctggagagaagggtgcacctgga
aaccaaggtgagcctggaccagcaggagagactggtgatgagggcgctcctggcgcagat
ggtcctcctggagaacggggcagcaatggagaaagaggccccccgggctcgccaggcgac
cgtgggccaagaggagagccgggagagcctggaccacctggtgaccaagggcgggaagga
cccctcggaccacctggcgaccagggtgaggctggacccccaggacccaagggctacagg
ggagatgatggccctcgtggcagtgagggcccaaagggattgcctggagcacctgggctg
cctggagaccctggcctgatgggagaaaggggggaggatggcccttctgggaatggcacc
gttggattcccaggcgctcccggacaacaaggagacagaggtgaccccggcattaacgga
acaaaaggttatgttggccctaaaggtgatgaaggagaagctggagaccctggcaatgat
aacccaacccctggccccaggggcatcaaaggagcaaagggccacaggggacctgaaggc
cgcccgggaccaccaggacccgtggggcctccaggaccagatgaatgtgaaatcttggac
atcatcatgaagatgtgctcttgctgtgagtgcacctgcggacccgtcgacctcctcttt
gtgttggacagctcggagagcatcggcctgcagaacttccaaattgccaaggacttcatc
atcaaagtcatcgaccgcctgagcaaggatgagcgtgtgaagttcgaacctggggagtcc
cgtgtgggcgttgtgcagtacagccacgacaacacgcaggagctggtggccatgggagat
gccaacatagacaacatcggcgcgctcaaacaggcagtcaagaacctgaaatggattgct
gggggcacctacactggagaagccctgcagttcaccagggaaaacctgctgcggagattc
acctctgacaagcgcgtcgccatcgtcatcacggacggacgctctgacacgctgcgggac
cctacccccctcaactccctgtgcgatgtcaccccggttgtttctcttgggataggcgac
attttccggaaccccccaaatccagatcatctgaatgacattgcttgtttaagcagacct
accaggccaggactgtctattcaaagggacaactatgctgagctcctggatgacaccttc
ttgcagaacatcacctcgtatgtctgccaagagaagaaatgtccagactacacctgccca
atcaccttcactgggctggcggacatcacactactggtggacagttccaccagtgtgggg
agcaagaactttgagaccaccaagaagttcgtgaagcggctggcggagcggttcctggag
gccagcaagcccgctgacgactccgtgcgcgtctcagtcgtccagtacagcggcaggaac
cagcagaaggtggaagctcagttccagcacaactacacggtcatcgccaaagccatcgac
aacatggagtacatcaacgacgccacggatgtcaatgccgctctgcggtacgtcacgggc
ctgtaccagcgatcttcccgtgctggggcgaagaagagggtgctgctgttttctgatggc
aactctcaagggatcacggccagagccattgagagggctgtgcaggaagctcagcaggct
ggcatcgagatctacgtgctggcagtgggcagccaagccaacgagcccaacatccgtgtc
ctggtcacagggaagagtgcagattatgatgtggcctacggggagcgccacctcttccgt
gtgcctgactatacgtctctgctgcgtggtgtcttctaccaaactgtctccaggaagata
gctgttgactga

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