Caloenas nicobarica (Nicobar pigeon): 135991683
Help
Entry
135991683 CDS
T11056
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03008
Ribosome biogenesis in eukaryotes
cnic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
135991683 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
135991683 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnic03019
]
135991683 (XRN1)
03009 Ribosome biogenesis [BR:
cnic03009
]
135991683 (XRN1)
03016 Transfer RNA biogenesis [BR:
cnic03016
]
135991683 (XRN1)
03036 Chromosome and associated proteins [BR:
cnic03036
]
135991683 (XRN1)
Messenger RNA biogenesis [BR:
cnic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
135991683 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
135991683 (XRN1)
Ribosome biogenesis [BR:
cnic03009
]
Eukaryotic type
Pre-60S particles
RNases
135991683 (XRN1)
Transfer RNA biogenesis [BR:
cnic03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
135991683 (XRN1)
Chromosome and associated proteins [BR:
cnic03036
]
Eukaryotic type
Gene silencing
piRNA pathway
135991683 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
135991683
NCBI-ProteinID:
XP_065496543
LinkDB
All DBs
Position
8:complement(13371654..13407403)
Genome browser
AA seq
1769 aa
AA seq
DB search
MGVPKFYRWISERYPCLSQVLKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISEDKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTVYLSGHETPGEGEHK
IMEFIRSEKAKPHHDPNTRHCLYGLDADLIMLGLTSHEAHFALLREEVRFGGKKSQRACA
PEETTFHLLHLSLMREYIDYEFSPVKDKISFEYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYRTYMAILPELGGYINENGHLNLKRFEKYLTKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGIAAEEARKNKQKKQKAQENSICLAALEKNEGEVTPKTVLEDEPED
DDLFETEFRQYKRTYYMTKMGVEVVSDDFLADQAECYVQAIQWILHYYYHGVQSWSWYYP
YHYAPYLSDIRNIGELKIKFELGKPFMPFEQLLAVLPAASKDLLPKCYQHLMISQDSPII
EYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLQAMESCNKCLKEEEKQRNTHSACLMYW
YDKDAEFQYMSPWPEKFPAIERCHTRYKTIPLDAWHVEITHNKITKINKSALYFCGFPTL
KHIKHKFYLRKSGVQVFQQSSHGENMMLEIIADKNSKEQMVENVASSVLGKRVFVNWPHL
EEARVVAVSDGETKFYLEEPHGTQKLYMGNAVPPTKVAYVGDKEQSTWVKEVQGISEQYQ
RRKGIIIHETSIVVYAQLLTGNRYQLKQNGEVYLEKQWSKQVLPFVYQTVVKDIKAFDSR
FSNIKTLDDLFPPGITAFMLGSPYYGCMGEVQDSRDVITEGRIRVVFNIPCEPQLDPLIQ
NQHKYSVKYNPAYILASRLGVSGYLVSRFTGSIFIGRGSKKNPHGDHRANVGLNLKFNKK
NEEVPGYTKKVGNEWMYSSAVEQLLAEYLERVPELFTYIAKNSQEDIFYEDDIWPGEDEN
GAEKVQEIVAWLKAHPVSALSRSSCDLQILDAAIVEKIEEEIEKCKQRKSNKKVRVTVKP
HLLYRPLEQQNGVVPDRDAEYRLFDRVVNVRENFSVPVGLRGTIIGIKGASRETDVLFEV
LFDEEFLGGLTIRCSPARGYRLPSSALINLSHGSRSEMGNQKLTAIVKPQPAANNYSSYT
SDQSSVCSQKVHLGGLNHSPRSLFVPTQQLNGRQHYNLRAENQGNSNLPQKGSFLSGNQK
NRAQSKQEDEFCSIWQSLQSSGKSHHIQQNMHEKGAFLPQEIKLGTGSQFYKPGFNDGSC
KGQQRKQEPYKKFKEDSKVTRGESQPLNKVSNKQNFAGVNKYNVKLLKRNESPNMPASQK
AAVDGPCTGGKKDNELESLLAALKISKENEVQTYSKEARATNEEHLSPQSFAMKGTQMLK
EILKIDGSDLETKNEVKSQVNDVPAPPSRQDCHGAALQYRQTKKMAAYMNKPHSTGGPQN
TPAVETGGHPFPCPQPAPSTVSELSRICSLLGMSQPDFSFLKTPQTMTVCHIKLSNGLLV
HGPQCHSEAEAKEKAALFALQRLGSIGVNFPLPPPPPVFPNYQPLGVPVPPGSIPPVFAQ
PPANIMPPSSHVFGPVSWGTPVPKHYYPGPYPGNVSLAGAIPVGSHNQFIPLQVTKKRAA
SKKNFELKEFQSSPQAAPLKNEQPVSSDHIQRDSSSAPLKSPQAAQSTVSFQDNVATPSV
PHNKSTPNTSSKRKPRKLAVNFGAPKSSE
NT seq
5310 nt
NT seq
+upstream
nt +downstream
nt
atgggggtccccaagttctaccggtggatctcggagaggtacccctgcctcagccaggtg
ctgaaggagcatcagattccagaatttgacaacttgtacctggacatgaatggcattata
catcagtgttcacatccaaatgatgatgatgttcacttcagaatctcagaagataagatt
tttgctgatatttttcactatttggaagtactgtttcgtattattaaaccaaggaaggtt
ttcttcatggcagttgatggagtagctccaagagcaaaaatgaatcagcagcgtgggaga
cgttttagatcagcaaaagaggcagaggacaaaattaaaaaggcattagaaaagggagaa
actctccctacagaagccagatttgactccaactgtattacaccaggaacggaattcatg
gccagattgcatgaacatcttaaatattttgtaaatatgaagatttccacagacaaatcc
tggcaaggagtaacagtctacttatcaggccatgagactccaggggaaggtgagcataaa
attatggagttcatcagatcagaaaaagcaaagccccatcatgatccaaacacaagacat
tgtctctatggcttagatgctgacttgattatgctgggattaacgagtcatgaggcacac
tttgcactcttaagagaagaagtcagatttggtggtaaaaagtctcaaagagcatgtgca
ccagaggaaaccacatttcatttactgcacttatcactgatgagagaatatattgattat
gaattttcaccagtaaaagacaagatttcctttgaatatgatattgaaaggataatagat
gattggatcttaatgggtttccttgtaggaaatgattttattcctcatctacctcattta
cacattaatcatgatgcactgccgctactttatagaacatacatggctatcttgccagaa
ctgggaggttacataaatgaaaatgggcatctgaatttaaaacgctttgagaaatatctc
acaaaactgtcagattttgatcgtgaacacttcagtgaagtctttgtagacctcaaatgg
tttgaaagtaaagtaggcaataaatacctcaacgaggcagctggtattgcagcagaggaa
gccagaaaaaataaacaaaagaaacaaaaggctcaggaaaattctatatgtttggctgct
ttagaaaaaaacgaaggtgaagtgacccctaaaactgtattggaagatgaaccagaagat
gatgatctgtttgaaacagagtttaggcaatacaaaagaacttactacatgactaaaatg
ggtgtagaagtagtttctgatgacttcttggcagatcaagctgagtgttatgtccaggca
atacaatggattttgcattattattaccatggagttcaatcgtggagctggtattatcct
tatcattatgcaccttatctgtcagatattcgcaacattggtgaactcaaaatcaaattc
gaactgggaaagcctttcatgccatttgaacagcttcttgctgtacttccagcagctagc
aaagatttgctacctaaatgctaccagcatttgatgattagtcaagactctcctattata
gaatattatcccccagattttaaaactgacctaaatggaaaacagcaagaatgggaagct
gtggtattaatcccatttattgatgagaaacgactgctgcaggccatggaatcctgtaat
aagtgcctaaaagaagaggagaaacaaagaaatactcacagtgcttgcttaatgtactgg
tatgacaaagatgcagagttccagtacatgtcaccatggccagagaaattccctgcaata
gaaagatgtcatacgagatataaaacaatacctttggatgcttggcacgtagaaataacg
cacaataagataactaaaatcaacaagagcgcattgtatttttgtggatttcctacttta
aagcacattaaacataagttctatcttagaaaaagtggcgtacaagtgtttcagcaaagc
agccatggagaaaacatgatgttagaaatcatagctgataagaactcaaaagaacagatg
gtagaaaatgttgccagttcagtacttggaaagcgtgtttttgttaactggccgcacctc
gaagaagccagagttgttgctgtgtcagatggagaaactaagttttatttggaagaacca
catggcacacagaagctttacatgggaaatgcagtgcccccaaccaaagtggcatacgtt
ggagataaggagcaaagcacgtgggtaaaagaagttcaaggcatttcagagcagtaccag
agaagaaaaggaataattattcatgaaacatcaatagttgtatatgctcagttactcact
ggtaatagatatcaactaaagcaaaatggagaagtttacttggagaagcagtggtccaaa
caagttcttccttttgtttaccaaactgttgtcaaggatatcaaagcctttgactctcga
ttttcaaacatcaaaactctggatgacttgtttcctcctggaattacagcctttatgctg
ggatctccttactatggctgcatgggagaagttcaagactcacgtgatgtgatcacagaa
ggtagaattcgtgtagttttcaatattccatgtgaaccccagcttgatcctttaatacag
aaccagcataaatattctgtgaaatacaatcctgcatatattttggccagccgtcttgga
gtaagtggatatcttgtctccagatttacagggagtatcttcattggaagaggatcaaag
aaaaatcctcatggagatcacagagcaaatgtggggctaaacttgaagttcaataagaaa
aatgaagaagttcctggctatactaagaaagttggaaatgaatggatgtattcttctgcg
gtagaacaactacttgccgagtatttagaaagggtccctgaactatttacttatatagcc
aagaacagccaggaagatatcttctatgaagatgacatttggcctggagaagatgagaat
ggagctgagaaagttcaagaaattgttgcctggttaaaggcacatcctgtgtctgctttg
tctcgctcatcttgtgacttgcaaattttggatgcagccattgttgagaaaatcgaagaa
gaaatagagaaatgcaagcagagaaagagcaacaagaaggtgcgagtaactgtgaaaccc
catttgctgtacagaccattagaacaacagaatggggttgttccagaccgagatgcagag
tataggctgtttgaccgtgttgtcaatgtgagagagaacttttccgttccagttggtctt
cgaggtaccattataggaattaaaggagccagtagagaaacagatgtgctcttcgaagtt
ttgtttgatgaagaattccttggaggcctaactataagatgctcacctgccagaggttat
cgtctgccatcaagtgccttaattaacctgtctcatggtagtcggtcagaaatggggaat
caaaaactgacagccatagttaaacctcagccagctgcgaataactacagttcatataca
tctgatcagtcatctgtatgctcacaaaaggtgcatctgggaggcctcaaccattctcct
cgctccctttttgttcctactcaacaactgaacggaagacagcattacaatctcagggct
gaaaatcagggcaactctaacttaccccagaaaggatcatttctgagtggcaatcagaaa
aatagagcacagagtaagcaagaagatgaattctgcagcatatggcaatcattgcaaagt
tctgggaagtctcaccacattcagcagaacatgcatgagaagggtgcatttctacctcag
gaaatcaagctgggaactggcagtcagttctataagccaggattcaatgacggcagctgt
aaaggtcagcagagaaaacaggagccatataaaaaatttaaagaagattccaaagtcaca
agaggtgaaagtcagccacttaacaaagtatcaaacaaacagaattttgcaggtgtgaat
aagtacaatgtcaaacttttgaagaggaatgaaagtcccaacatgcctgcaagtcagaaa
gctgcagttgatggtccctgtacaggtggaaagaaggacaatgaacttgaaagccttcta
gctgctttgaaaatttccaaagaaaacgaagtgcagacttattccaaggaagcaagagct
acaaatgaagaacatctgtcaccacaatcatttgctatgaaaggaacacagatgctcaaa
gagattttgaagatagatggctctgacctggaaacgaagaacgaagtgaaatctcaagtt
aatgatgttcctgctccccctagtagacaggattgccatggagctgccttgcaatataga
caaacaaaaaaaatggctgcttatatgaacaagcctcatagcactggaggcccccagaac
acaccagcagtggaaacaggaggtcaccctttcccttgtccacagcctgcaccgtctact
gtttctgaactttctcgtatttgttctcttcttggaatgtcacaaccagatttctctttc
ctaaaaacaccacagaccatgacagtctgtcacataaaattatcaaatggtttgttggtt
catggaccacagtgtcattctgaagctgaagcaaaggagaaagctgcactttttgcttta
cagcgtttgggttctataggagtaaacttccctttgcctccgcctcccccagtgtttcca
aattatcagccgctgggagttcctgtaccacctgggtccattcctcctgtatttgcacaa
ccccccgctaatataatgcctccatcatctcacgtgtttggtccagtgtcctggggaact
ccggtgcctaaacattattatcctggcccctatccaggaaatgtgtctcttgcgggagct
ataccagtcggttctcacaaccagtttatacctctgcaggtaactaaaaaaagggctgct
agcaagaaaaactttgagctcaaggagtttcagagttcccctcaagctgcaccactaaag
aatgaacagccagtgtcttctgaccacattcagcgagatagttcttcagctcctttaaaa
tctcctcaagctgctcaatccactgtttcatttcaagacaatgtggctactccaagcgtt
cctcataacaaatcaacaccaaacacttccagcaagcgaaagccaagaaagctggctgtc
aattttggcgcaccaaaatcttcagaataa
DBGET
integrated database retrieval system
