Caloenas nicobarica (Nicobar pigeon): 135991973
Help
Entry
135991973 CDS
T11056
Name
(RefSeq) cyclic nucleotide-gated channel beta-1-like isoform X1
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
135991973
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cnic04040
]
135991973
Ion channels [BR:
cnic04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
135991973
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2
zf-H2C2_2
zf-C2H2_4
cNMP_binding
zf-C2H2_jaz
zf-C2H2_6
zf-met
C2CH-3rd_BIRD-IDD
zf_PCFS4
Motif
Other DBs
NCBI-GeneID:
135991973
NCBI-ProteinID:
XP_065496934
LinkDB
All DBs
Position
9:16242080..16283202
Genome browser
AA seq
1777 aa
AA seq
DB search
MSESWQQQQQQPQQPPPPQQHHAGAAALPEHSIPPSTADNPLGCAVYGILLQPDPGLQHH
QHTPIQAGEPSHKCGVCGHDLGHLSNPHEHQCLPGHDRSFQCTQCLKIFHQATDLLEHQC
IQVEQKPFVCGVCKMGFSLLTSLAQHHNVHNGNAMKCSICEKTYKPPEVEHPQPLDPSEK
PYSCSICQKTFKHLSELSRHERIHTGEKPYKCTLCDKSFSQSSHLVHHKRTHSSERPYKC
TVCEKTFKHRSHLVRHMYAHSGEHLFKCNVCELHFKESSELLQHPCTPSGERPFRCGECQ
KAFKRPSDLRQHERTHSEERPFKCDLCQMSFKQQYALMRHRRTHKTEEPFKCNLCEKGFV
QPSHLVYHQHVHGIENLFKCNVCQKGFNQSSELLRHKCVQNAERPFKCAVCNKSYKRASA
LQKHQLAHCAEKPLKCTLCERRFFSSSEFVQHRCDPAREKPLKCPDCEKRFKYASDLQRH
RRVHTGEKPYKCPSCEKAFKQREHLNKHHSVHAREQQYKCMWCGERFLDLGLLQEHSVQH
TAEGAYQQERRSPLPADDLTCSIPPPGQGTCTTATGLSPAGDPSSLPAGSWMLGWFERVV
PQPSLPHITEETPPAPVQEPEPAKAPTGKAGGPGDAADHAHTKEEAEKKVGFAVPEDRGS
VFESVGSSVLSWISQGLEKVIPQPVPAPGTLQALGKSFETSIDVPDQTEVQILKDEEEDA
LEITPFDQEDELDGCESEADLDTGMKEWAGARVLSWLVQGFERMVPQPEVLKKPEPEPKE
QKCEATTGGTKGTKTRAKAKSSVSATQSMPGAVEPAAAKGQPEPTATLIPQSLAGDGSRM
FAWFVQGLEKVMPQPVTREKQDTQGVATATSSPVEEIHIVPGEPEETDLILEEITDEWIN
KATCEMMAWGREAELVTDACPLPPIQEEPQEEETRLWLCSLSAAEEEEEEKEEKGEEEEE
EKKAEESTGALSPCLTADEGVDGIYFAEEALRFEQLEEAEISDLEGAFVQVEEETAEATE
TDAEGNYPTLGSKDADGGGDAVEDGTHLPVPGTPNMLAVPGAAPASPRRKLLAPADALAE
GLVIQSPTRGLLGWDREQGESLPERIGSATSVSSAVINNRLQELVKLFKERTEKVKEKLT
DPDVTSDDDSPTASPAKPVPAAAPVLPPAEPEGDKPAGDEHYCEMLCCTFKYRPWLDRLK
NYQFPSSIDPLTNLMYVLWLSFVVMAWNWNCWLIPVRWAFPYQTPGNIHFWLLVDYLCDL
IYLLDILVFQTRLQFVRGGDIITDKKAMKQNYLRSQRFKMDVVCLLPLDFFYFKVGVNPL
LRFPRCLKYMAFFEFNNRLEAILSKAYIYRVIRTTAYLLYSLHVNSCLYYWASAYEGLGS
TTWVYDGEGNSYIRCYYWAVKTLITIGGLPDPKTLFEIVFQLLNYFTGVFAFSVMIGQMR
DVVGAATAGQTYYRSCMDSTIKYMNFYKIPKTVQNRVKTWYEYTWHSQGMLDESELLVQL
PDKMRLDIAIDVNYNIVSKVALFQGCDRQMIFDMLKRLRSVVYLPNDYVCKKGEIGREMY
IIQAGQVQVLGGPDGKTVLVTLKAGSVFGEISLLAAGGGNRRTANVVAHGFANLFILDKK
DLNEILVHYPESQKLLRKKAKKMLKNNNKPKDEKGAPGDTLIIPPKADTPKLFQAALAAA
GRMGGKGPLAQLRWRLKELKAMQETQGSSFSPDPPKSPVHQRSPVTSHKARTHMGEEIFS
KSSDSLVTIRVISTAQEDEEILAAEISEKEEEEKEEK
NT seq
5334 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaagctggcagcagcaacagcagcaaccacagcagccgccgccaccgcagcag
caccacgctggggcagccgccctcccagagcactcaattccgcccagcactgctgacaac
cccttgggctgtgccgtctacggcatcttgctccagccagacccaggtctgcaacaccac
cagcacacccccatccaggctggagagccatcccacaaatgtggggtgtgtggccacgac
ctcggtcacctctccaacccccatgagcaccagtgcttgccaggccatgaccgctctttc
cagtgtacccagtgcctgaagatcttccaccaggccactgacctcctcgaacaccagtgc
atccaggtggagcagaagccctttgtgtgcggcgtctgcaaaatgggcttctcccttctg
acctcgttggcgcagcaccacaatgtccacaatggcaatgccatgaagtgctccatctgc
gagaagacctacaagcctcctgaggtggaacatccgcagcctctcgacccctcggagaag
ccctacagctgctccatctgtcagaaaaccttcaagcacctctcggagctgtcccggcat
gagcgcatccacacaggtgaaaagccctacaagtgcacgctgtgtgacaagagcttcagc
cagtcgtcccacctggtgcaccacaaacggacacacagctcggagcggccctacaagtgc
acggtgtgtgagaagaccttcaagcaccgctcccacctggtgcgccacatgtatgcgcac
tcaggggagcacctcttcaagtgcaacgtctgcgagttgcacttcaaggagtcatcggag
ttgctgcagcacccctgcacgcccagcggggagcggcccttccgctgtggcgagtgccag
aaggccttcaagcgtccctcggacctgcggcagcacgagcgcacacacagtgaggagcgt
cccttcaagtgtgacctctgccagatgagcttcaagcagcagtacgcgctcatgcgccat
cgccgcacgcacaagaccgaggaacccttcaagtgcaacctgtgcgagaagggcttcgtg
cagccctcacacttggtgtaccaccagcacgtgcatggcatagaaaacctcttcaagtgc
aacgtgtgccagaaaggcttcaaccagtcctcggagctgctgcggcacaagtgcgtgcag
aacgcagagcggcccttcaagtgcgcggtgtgcaacaagtcctacaagcgagcctcggct
ctgcagaagcaccagctggcccactgcgccgagaagcccctcaagtgcacgctctgtgag
agacgtttcttctcctcctccgaattcgtgcagcatcgctgcgacccagcccgtgagaag
cccctcaagtgccccgactgtgaaaagcggttcaagtacgcctcggacctgcagcggcac
cggcgtgtgcacacgggcgagaagccctacaagtgcccctcctgcgagaaggccttcaag
cagcgcgagcacctcaacaagcaccacagcgtgcacgcccgggagcagcagtacaagtgc
atgtggtgcggggaacggttcctggacttgggcctgctgcaggagcacagtgtccagcac
acggccgagggcgcctaccagcaagagaggaggagccctctacctgcagatgacctgact
tgctccatcccacccccaggccagggaacgtgcaccactgctactggcctctcgccagct
ggagacccctcctcgctccccgcaggcagctggatgctgggctggttcgagcgggtggtt
ccgcagccctcgctgccccatataacagaagagacgcccccagctccagttcaggaacca
gagccagctaaggcaccgacaggaaaggctggtggccctggggatgctgctgaccatgca
cacaccaaggaagaagcggaaaagaaggtgggatttgcggtccccgaggacagaggctct
gtgtttgagagcgtggggagcagtgtgctctcctggatctcccagggactggaaaaggtg
attccccagccggtcccagccccagggacactgcaggcactcgggaagagcttcgagaca
agcattgatgttcctgatcagacagaggtccagatcctcaaggatgaggaagaggatgct
ctggagataacccccttcgatcaggaggatgagctggatggctgtgagtccgaggccgac
ttagatactggcatgaaggagtgggcaggagcgcgggtgctcagctggctggtgcagggc
ttcgagaggatggtgccacagccagaggtgctgaaaaagccagagccagagccaaaggag
cagaagtgcgaagccacaacgggaggcacaaaagggactaaaacccgggcaaaggcaaaa
agcagcgtttcagccacccagagcatgccgggagcagtggagccggcagcagccaagggg
cagccagagccaacagccaccctcatccctcagtccctggctggggacggcagcaggatg
tttgcctggtttgtccaggggctggagaaggtgatgccacagccggtgaccagggagaag
caggacacacagggagtggctaccgcaacctcgagtcctgtggaagaaattcacattgtc
cccggggaacccgaggagaccgacctcatcctggaagagatcactgatgagtggattaac
aaagccacctgtgagatgatggcctggggtcgtgaggctgagctggtgacagatgcttgt
ccccttccccccatccaggaggaacctcaggaagaagaaaccaggctgtggctgtgctcc
ctgagtgctgccgaggaggaggaagaggaaaaggaggagaagggggaggaagaggaggag
gagaagaaggcggaggagagtacaggagccctatcaccttgtctcaccgctgacgagggt
gtggatggcatctacttcgcagaggaggccctcaggtttgagcagctggaagaagctgag
ataagtgatctggaaggtgcttttgtacaggtggaagaggaaacagctgaagctactgag
actgatgctgaaggtaattatcccaccctgggcagcaaggatgcggacggcggaggcgat
gctgtggaggacggtacccacttaccagtgcccggcactcccaacatgctggcggtgcct
ggtgcggcaccggcatcccccaggaggaagctgctggccccagcagacgctctggccgag
ggactggtgatccagtcgcccacccgagggctgctgggctgggacagggagcagggggaa
agcctgcccgagcgcatcgggtcagccacgagtgtgagcagcgccgtcatcaacaaccga
ctccaggagctggtgaagctgttcaaagagaggaccgagaaggtgaaggagaagctgacc
gaccctgatgtcacctcagatgacgacagccctacggcatccccggccaagccagtgcct
gcggcagcaccagtgcttccccccgcggagccggagggggacaagccggcgggggacgag
cactactgcgagatgctgtgctgcaccttcaagtaccggccctggctggatcgcctgaaa
aactaccagttccccagcagcattgacccgctcaccaacctgatgtacgtgctgtggctt
tccttcgttgtcatggcctggaactggaactgctggctgatccccgtccgctgggctttc
ccctaccagacaccaggaaacatccacttctggctgctcgtggactacctctgtgacctc
atctatctgctggacatcctcgtctttcagacccggttgcagtttgttcgggggggagac
ataataaccgataaaaaggccatgaaacagaactacctgcgatcacaacgctttaagatg
gatgtggtgtgcctcctgcccctggatttcttctacttcaaagtcggtgtcaacccactc
ctgcgttttcctcgctgtctgaagtacatggccttcttcgagttcaacaaccgcctggag
gccatcctgagcaaggcctacatctacagagtgattcggaccactgcctatttactgtac
agcttgcatgtgaactcctgcctctactactgggcatcagcctacgaaggactgggctct
accacctgggtctatgatggggaaggaaacagctacatccgctgctactactgggcagtc
aaaaccctcatcaccatcgggggtttaccagatcccaagactctgttcgagatcgtcttc
cagctgctgaactacttcacgggcgtctttgctttctctgtcatgatcgggcagatgaga
gatgtggttggcgccgctaccgcagggcaaacttactatcggagctgcatggacagtacc
atcaaatacatgaacttctacaaaatccctaaaactgttcagaaccgggtgaaaacgtgg
tacgagtacacctggcattcgcaaggcatgctagatgagtcagagctgctggtgcagctg
ccagacaagatgaggctggacatcgccatcgacgtgaactacaacatcgtgagcaaagtg
gccctcttccagggttgcgacaggcagatgatctttgacatgctgaagcggctcagatcg
gtggtctacctgcctaatgactacgtgtgtaagaagggagaaatcggccgtgagatgtac
attatccaggcgggacaagtgcaggtgctggggggacccgacggcaaaaccgtgctggtg
actctgaaagctgggtctgtgtttggggagatcagcttgctggcagcaggagggggaaat
cgccgaacagcaaacgtcgtagctcatggctttgctaacctcttcattttggataaaaag
gacttgaacgagattttggtgcattatccagagtctcagaagctgctgcgtaagaaggcc
aagaaaatgctgaaaaacaacaacaaacccaaagatgagaaaggagcacccggagacaca
ctgatcatccccccaaaagcggacaccccaaagctcttccaggctgccctggctgccgcg
gggaggatggggggcaaggggccgctggcgcagctccggtggcggctgaaggagctgaag
gcgatgcaggagacgcagggttccagtttcagtccagacccaccaaaatcaccagtgcac
cagagatctcctgtcacctcccacaaagcacgcactcacatgggagaagaaatattctca
aaatcttctgatagtttagtcaccattcgtgtgatttctacggcacaagaggatgaagaa
atccttgctgctgagatttcagagaaagaggaagaagaaaaagaagagaaatga
DBGET
integrated database retrieval system
